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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054276 ID=TCONS_00054276|Name=TCONS_00054276|organism=Clytia hemisphaerica|type=transcript|length=776bp
CAAAGAGTTTGACAAACAACAAGACTGTTTTAATCATCAAGATTACAGTA
TAAAAATCCTTCACTTCAATCCCAAAACCAATCATACCTTCGAAACGATA
AAGAAAGCTGAACCTCAAGTTTTTCTATAATATTTACAACAATCACAAGA
TGAAGTTGTCAATTGTGATCGCATTTTTAGCCACGATATTGATCCAACAA
TTATGGTCAGTTGAAGGATTTACTGTCGGGCGTGGTCCAGGAAAACGTGA
AAATAAGTTCAATGCTTTATTTGCGAACGCATTAAAACGAGTGGTATCAG
AAGAATACGAAAGGAGCCTTTGTTCAAGAATTTGTGGCGGAAAATTGATG
GCTAAAGATGGTTGTATCATCCAGTGTAGAAGATACATTGCCAAACGTTA
AAGAAATATTTccccttcattttttttctatagGATACTTAAGGGGGTAA
TCCAGTCCGGAAGATTTGAAACAGATCAGTACGGTTCGTATTAACTCTCT
GTACCGAACCGTTCCGTGTCTTTATGCACTGAATAGAACGACAAATAGCA
CGGCTCGGTTTTCAACTCTTCTTGTACATACTTTTAACATCATGCGTGTG
ACATTTTTCATCCGTACCGATCCGTATCAAATTTTCCGGACAGGATTACT
CCCTTTAATTATATATTTTATTCTTTAACATTTTGTTACCCTGTTATATT
TATTGGAATAGTATTTTTCTCTTACTATACAAATTATATTGAAACTTGAA
ACACACACACAAACATTCTATAAACG Run BLAST on NCBI transcript from alignment at scaffold_242:1558934..1560078+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054276 ID=TCONS_00054276|Name=TCONS_00054276|organism=Clytia hemisphaerica|type=transcript|length=1145bp|location=Sequence derived from alignment at scaffold_242:1558934..1560078+ (Clytia hemisphaerica)
CAAAGAGTTTGACAAACAACAAGACTGTTTTAATCATCAAGATTACAGTA
TAAAAATCCTTCACTTCAATCCCAAAACCAATCATACCTTCGAAACGATA
AAGAAAGCTGAACCTCAAGTTTTTCTATAATATTTACAACAATCACAAGA
TGAAGTTGTCAATTGTGATCGCATTTTTAGCCACGATATTGATCCAACAA
TTATGGTCAGTTGAAGGATTTACTGTCGGGCGTGGTCCAGGAAAACGTGA
AAATAAGGTAAGAAGcatctttaattttttaaatgggGTAGGTCTCGTCA
TTTTGATAAAGCTTTGATACTAACGTTATTAATGGTCAATTTCCATCGAT
GGAATTTTCTATCAAGACATTCATTCTTATTTAAGCCTCATCCTCGTTAA
TTCAAGAAACTACAATATCAACTATTAACAAATTTTTAATAAAGGCTCTT
ATGATTAatataagtttacttgaaaatcCTCCACATGCTTTCAAGCTTTC
TCGCTCTCGTGACGGGATGCTAGCTAGGGGAAATTGGGGAAACTTTTgaa
ttgagtttttttaagatagAGTTTTAGTAGAATTTCTGACATTACAAAAC
TAAACAATCTGTTTTCTGTATTTCAGTTCAATGCTTTATTTGCGAACGCA
TTAAAACGAGTGGTATCAGAAGAATACGAAAGGAGCCTTTGTTCAAGAAT
TTGTGGCGGAAAATTGATGGCTAAAGATGGTTGTATCATCCAGTGTAGAA
GATACATTGCCAAACGTTAAAGAAATATTTccccttcattttttttctat
agGATACTTAAGGGGGTAATCCAGTCCGGAAGATTTGAAACAGATCAGTA
CGGTTCGTATTAACTCTCTGTACCGAACCGTTCCGTGTCTTTATGCACTG
AATAGAACGACAAATAGCACGGCTCGGTTTTCAACTCTTCTTGTACATAC
TTTTAACATCATGCGTGTGACATTTTTCATCCGTACCGATCCGTATCAAA
TTTTCCGGACAGGATTACTCCCTTTAATTATATATTTTATTCTTTAACAT
TTTGTTACCCTGTTATATTTATTGGAATAGTATTTTTCTCTTACTATACA
AATTATATTGAAACTTGAAACACACACACAAACATTCTATAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054276-exon-scaffold_242-1491911889:1558934..1559190 | TCONS_00054276-exon-scaffold_242-1491911889:1558934..1559190 | Clytia hemisphaerica | exon |
| TCONS_00054276-exon-scaffold_242-1510915933:1558934..1559190 | TCONS_00054276-exon-scaffold_242-1510915933:1558934..1559190 | Clytia hemisphaerica | exon |
| TCONS_00054276-exon-scaffold_242-1575043694:1558934..1559190 | TCONS_00054276-exon-scaffold_242-1575043694:1558934..1559190 | Clytia hemisphaerica | exon |
| TCONS_00054276-exon-scaffold_242-1491911889:1559560..1560078 | TCONS_00054276-exon-scaffold_242-1491911889:1559560..1560078 | Clytia hemisphaerica | exon |
| TCONS_00054276-exon-scaffold_242-1510915933:1559560..1560078 | TCONS_00054276-exon-scaffold_242-1510915933:1559560..1560078 | Clytia hemisphaerica | exon |
| TCONS_00054276-exon-scaffold_242-1575043694:1559560..1560078 | TCONS_00054276-exon-scaffold_242-1575043694:1559560..1560078 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1558934..1560078 + |
Blast
The following BLAST results are available for this feature:
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