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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054277 ID=TCONS_00054277|Name=TCONS_00054277|organism=Clytia hemisphaerica|type=transcript|length=2387bp
AGattttaatttgtatttatGGTTTCCTTTTCGAAAGTGTGTAGCAACCA
TATAAAACAGCTCAGAGACCAGTTAAAGCACAacctttaaagattttaaa
tattttgaaatattttaatcttCCAACCACAAAAGTgttgggaaatttca
aaatttgtaagccataaaagaagattttcataaaaaacacttTACATGGA
TTATCATTTTTgagtAGCGATAGAAGAACAAGGCTTTGGAGAAGGGCTCA
CATCAAGCACTAAAGAAAGACTTCGTTTATCCTTATCTGGCACATCGAGC
GATTCACAAATGTCAGGAACCAAACACGGTAATGGAAACACCTCGCGTGA
AGAGCGGAGAAAAAGTCGGAAGATCAAAACAACGCGATCAGTAGAAACAC
AGACAGAAGAAAACTCGTTTTGTCTTTGTTTCATACCAGAGTACAAAGCA
CAGTTAGATGAAGAACAAGAACTGGACCCTCGCATTCGTTTAATGTTAGA
TCAATTACACGTGCTTACTGAAGGGAAGGTCACGTGTGTTGTccgaaatt
ttgagaaaaaaccgAAATGGACTGCTAAACAACGCTGGAAAATGTCAGGG
AATGCAGTACGAGCGGTCGGCAAATTTAAGGGAAAGAAAAAGAAGTTGAT
GAATGTAACGTTAACGAATTATGAAGATGAAGAACTGAAAAGTGGGTTTT
ACACCAAAGATGTTGTCGAACAAGAAAATGAAGAGGAAGATGATTTCTTC
ACTAATATCATCAAAGCCAAAAGACGTTTCTCCCTCAAGAGGTTCAGTTT
GAAGAAACGGAATCCACGACAAAGGAGTTATAGTGATTATGGTGGACAAC
GTGATCGGTTAATCGAGCAAACGAATGGGATAATTGAGGCACATAATGGC
GCAGGTAAAGCGATTGAGGTTCCTGAGGTTCCAAAGAGCCAGGAGAATTT
GATCATTGAGAGTTTTATAAACGAATGTATGAGAGAAAGCATGCGGAAtc
ataaaaataataacaaaaacaatCGAGAAAAAGAACGCCATCGCAGCGAT
CGCAGCAGTGCGGAGGAAAATAGAGATCAAGATGATGAACGTGACAATAA
GAGTGGAACATATTCACCAGCGACACAAAAAGAACGAAAACACGTCACTA
GGAGTATTACGATGCCTAACAACGGATCACGTTATACGAAAGATTCAGCC
GCGGACGACCGCCGCGAGACGATTCCGCGTGAAGCGAGGCGGAGTGAGGG
GGAGGATCGTGTAGAGGAATCACGAAAGAAAACAAGGAGACCACGAAGTG
ATGTTGTAGGGATAACAGACATTGCCGAGAGACAGAAAAGAGCTTCTGAG
CGCATGTCAAATTATTATGAGAAAacaacaaatttgagtcaagaGGAACA
TCCATTCAGTAGACGAAACGGTATCAAAAAACATTCACGTCAAGAAAACG
GTTATGATTCGGAACACGGTAGTACGTTGTCTGCATTCGCATTGGTACCC
GGTACAGACTTACAACGAAAACTCTCGCAACACGGCATTAACGATAAAGC
CTCTATAGACGTTATAACGAGACAAACTCGAACAAACGGGTCACAGAAAA
GTAAACCGGACAGAAAATATCCTCCACCGTCATCGTCAGCGAGGAACCCA
AAACCAACTCATCATAGGCGTTCCTTTCAAAGTGTAGACAATATATATGC
ATCTTCTTCAACCTCCTCCATACATCAAAACAAGCGTTTCTCATCCTCAC
ATATGACGAACAATCTCCAGAATTCTTTCAGTGCTGATGATATCGATGAT
ACATCTTCACACGTGTTCAAACCTTTGAAAAGTGagattaaagatggcgg
cacATTGAACTTTATGGTAACTTCAACTCCAAGAGAAATAGTTGAAGATG
TTCCAGAGGAACGTGAGGCTGAAGAGGAAGAAGGATATGCAACTTAtgtt
tgaaaatggaaattgCTCTCAGCGACTTTCTTCTAACCAATGTTCAACCC
GTTGAACATGAAATGTCAATTCATCATTGAAGGTTCAATTTTGGGACCCT
CACCGGGACAGCGGaacttttttactaaaatttagcCTAGATAAATATTG
AAGTTTTGCATCCCTTAGGGAAACTGAAACTATTTAAGTTGATATTTATT
gacttatttttgctaaaaattggtTCACAGGTCAGACATTTGAAAGACCA
TTTTATGAAGTTTCTCCTTGTTACAGCATTGTTAAATTGCGATGCTTTTA
TGAGAAactaaattcataaattttaatGAGGATAGGAGTTTCATACTACT
TATAGCTATTTAGAAAATACATGTTCGAAATTTTGAAGCTCATTATCTCA
TTCAGAGACATTTTGGCaggtttttaaatttctaaag Run BLAST on NCBI transcript from alignment at scaffold_242:1565310..1572269+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054277 ID=TCONS_00054277|Name=TCONS_00054277|organism=Clytia hemisphaerica|type=transcript|length=6960bp|location=Sequence derived from alignment at scaffold_242:1565310..1572269+ (Clytia hemisphaerica)
AGattttaatttgtatttatGGTTTCCTTTTCGAAAGTGTGTAGCAACCA
TATAAAACAGCTCAGAGACCAGTTAAAGCACAacctttaaagattttaaa
tattttgaaatattttaatcttCCAACCACAAAAGTgttgggaaatttca
aaatttgtaagccataaaagaagattttcataaaaaacacttTACATGGA
TTATCATTTTTGTAAGTTTTCTTCAtcttaaaagtttatttttaataGAT
TTGCATCTGTAATAATACCGAGGTCGagagaaaaatattcataattTAAT
CTAACTTTATGAATATTCcctattctttattttttattcaagtTTAACAA
GAAGAACCATTTAAGAGAAATTTCATTCAATGGGGGTAATACatgaaaaa
tttacaatttaagaaaaactgaaaactccTTTATCTCGGCTAATGCTCTA
TCCCCCTTTATGAATTTTCGTTGTGTCCCCTTCTggcttgttttgaaatt
tacctTTTAGAGGGAAGAAAGAAGGGGGCTTTATTTAATTCTGTTTGAGA
AAAATGCGGTCTGTATTCGAGGAATGGCgatccaaaataaaaaatcttga
aaaataatccgtattttttcgagaaaaaaaatactcTGAAAAGGCCCGAA
AGATGGAGTTTGTATGAATGGATGAATTGAGAATTGAGACAAGTAGACAA
ACCTCTAAAGATTCAAATGTATAGCTGATGGAGAGTGTTTTCTTTctaat
gttgatatttttaaaatattaatAATGATATAGAGAATTGACTTATGGAA
GTTATTTGACAGTGTTTGCAACGCGAAATGTGTTATAAATGAAAAGAACG
AACTGTGAAGAAGAAAAGATCTGAAGAAGATATTAAATTGAGCAAATCGA
AATCTCCGAACTTCTTTCTACCCATTCAGGTCGGTAACGTTTTTATAAAG
TCTTTCGAAATCACTTTTAGAGTACATTGAGGACACAAAGAGGTCCAGAA
GCTGACTGAGTGGCCTCTTTTAAGAGCAAAATCTTTGTCTCTGAAGTGCT
CTGAAGTTTCACTTCAtgaaaaagatcattttggagCTGACAGGTCGTGA
AACTTGAATAAGATGGAATTGTTCGAAGGCAATCATTTTGAAATGATTTC
GTCCATTATACGTAAGTTGAGAGACTGAACATGAATTTTGTTTCACTATT
ACACATTTCCTTAAGGGCTTTCCTTAGAAATTCAATTGATGGGTTTGGAG
TTAAAGGGCTCAGTGCCCCGATAGAACTTTTTCCcctcaatggggatgaa
aatttctatcaaaatgccaatggggatagaaaatctattgtttccagctc
gaaaattccagtggggatggttttggaatacaattttttacattcagttt
tcaatggggataaaatcatagagcaatttcgcactggggttgaaattgta
ggatattttttccaccggggtggggggtccaccgggtctgtgaaacaggg
gtgtaggGAAGCATAAGAAGAAGATAAAGCCAAAAATATGATTTCGTCAT
TTATACGTAAGTCTGCGTAATTAGAGAGCGACAGAACGTGAATTTGGCTT
CACTATTACACGTATGGTTCAAGTCATCTTAGAAACTCACTTGACGAGTC
TAAAGTTTAAAACGAGAAGAATAAAAGATGAGGGTACATAAGGCAAAAAA
TTAAATGTATACAAATTACATAAATTTGAGACCGGTATGAAATTTTAAAG
TCTAATTTTAGAGTCTAATTATAGGTCGGAAAAATTGTCATGTCGGCATT
TGAATCCCTCTGAGAAAAGCTCCTTTTGAATGGTATAGTATCATGCTATA
ATACAAAACAGGTCTGAAAATATCACACTAAAGATATTCGTAACAACATG
ACCAGGTCAACCATTCTGAGAAAGgttaaatcaaataaataaataacagG
GAGCTATGTCTCTTTGTAAATGATACAGTAAAATGTCACTGTTAGGAGAA
CTATTCAATGAGTGATAAGGCTGCCTCGTTTTAATACCATAGGAGGCACT
GCAGTGTAATGAAAGCAATATATTGTAGCTAACATTAagaaagaaataga
aaaaacaatttttgcacACTGAGTGAACTGTTGTACTTTTAATATTGATT
TTATGTATTAGCaattttgaggacggtagagtggcTCAATTAAACCGCAA
AATCTAGGACGGTTAAGAGTGCTGATTTACCTTCGTTCTCAGTCAATCAG
GACCGAGTTTCTGTATAGGAGGACATCGAGagcgacggtaagtgaagtcg
atgcaaaacaaagtcgatagttgatgtacggctggctctatatcgccttt
acTGACcaaaacagacgacggtattttggtatttttaaccGTCTCTGAGT
AAAGTGGACCGAAATTTTAGGACATGTCAATTTTActttataccgtctcc
ttcaatttatctcgaatacatgaACTCGCTAGGATCTAGACAAATGAGAA
GCTAACAGTCTCTGTTGCTGAAAAACACAGatgcataaactcgctaatat
gaATCATTTGGCTGTTTGACAATAATTAGCAGTGTCTAGAGTCAGCTGTT
TATAAACAACCGCAAAAAAGGATTCCATTTTGTACGGTAATGACTTCCTC
AGAGTGGTAAAGAGGTTGGTTTTGGTAGAAAAAATGTGTCGGTGTGATTT
TCGTTCGGTGATTTATGACCTTATTCTTCATAAGAACGTTTTTAAGGATA
GTAAAATCGAGAACAGACTTGTTAGATCCTAATGTAATGAAAAGATTATA
CGCAAATTTTGAAACGTTCCGATTAGGCTTAGTGGAAAGCAAGAAACGAC
ATCGTGTAGAAAGGTTATTCGAAATTTAGTGTAGGACTTCTTCACTTCAC
TTCTGGAAAAcattatttcttaaaagaaaacttGATTTCTTAATTATGCT
TTAAAGCTAGTTCAACGATCAATATACTTATTTTTTGACATATAAACCTG
CGTTACGCAGCAGGACAACAATTATTCGAAATAGACTTTTACATGATACG
GAACATATACAATTTGGTGCTTTGTACTGCATGTAGGAGTTAGATACTTT
CTAGAACGTAGTTTGAAAGAAGTTGTCCATAACTNTGATACGGAACATAT
ACAATTTGGTGCTTTGTACTGCATGTAGGAGTTAGATACTTTCTAGAACG
TAGTTTGAAAGAAGTTGTCCATAACtgaatttcaaaagttattaataaaa
acgaatggatttttttttcaggagtAGCGATAGAAGAACAAGGCTTTGGA
GAAGGGCTCACATCAAGCACTAAAGAAAGACTTCGTTTATCCTTATCTGG
CACATCGAGCGATTCACAAATGTCAGGAACCAAACACGGTAATGGAAACA
CCTCGCGTGAAGAGCGGAGAAAAAGTCGGAAGATCAAAACAACGCGATCA
GTAGAAACACAGACAGAAGAAAACTCGTTTTGTCTTTGTTTCATACCAGA
GTACAAAGCACAGTTAGATGAAGAACAAGAACTGGACCCTCGCATTCGTT
TAATGTTAGATCAATTACACGTGCTTACTGAAGGGAAGGTCACGTGTGTT
GTccgaaattttgagaaaaaaccgAAATGGACTGCTAAACAACGCTGGAA
AATGTCAGGTAATTTTagatcactgacctttatcataccctggaccaagc
ttcatCCTCCATGTTTGATAGGAGCTTTTTCCCATGccatactcttgtct
cccgtatatacggggggtccgaataagcaggggggtaggaaaattttcta
aattctaataagcgggggggatggaataagaggggggggtaGTTTAAAGA
CAGATTTTTTTCTAACtggtatcaatttcaacaacaaaaaagaaacttta
acaaataaacACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCT
TTttgtctcttaacaattagcggggggacgtctattcgggagacaagagt
agtgGGAGCACGACTCGATGTGGGTCAATTtataattcaatgaaattttc
tgtttaaagattttttcacccacattgagtagtgctaccattagagTATC
AATTTAAAAgaactctgatcaaagattttgcttgggcCGGGATCTGCCGG
GATCGAGAAattttgtccagggtatataaaggtcagtggtctaGATAACC
AATCTATTCAAATTATCATAAACTGGACAAATGATGGTTTCACTTCGAGG
GAAAGTTTTTAGATGAAATATAAATTATTGATGAAGATAGGGTCTTTGCG
GTTCGAACATTGATAatgactttaaataaaaaaacatcttttcTGCTATC
AAAAATAAACTGAATGTGACTGCATTAAAACCTCTACCTACATTTTGGCA
AAAGAACATCAACATCGCTTGGGAGACTTTGGTACATGAATCTAGCAACT
CCTCCCAACCTCCCAACATAGCTTCTTTTGAAATGGACAACACGAAACCC
ACCCAAAATAAAGTTCTAACCCCAGGTACTAATTTTGCAGGATgcgaaag
ttttcgaaaatatgaaaaaatataatttagtGAAAACNACTAATTTTGCA
GGATgcgaaagttttcgaaaatatgaaaaaatataatttagtgaaaacca
attttcaagaaaaccaaaaccaagaacaattttataagaacgattttata
agaacgtaaggctaaaaaatttgccaaaatctaagaacaatttaaaaccG
CCCAAGTCTCAGACTCTAGAGATTACTAAGAAAGTACAGGTTTTAAACCC
ATTTCAGactttaagtaaagaaactaagcgtattaaGAACGTCGTAAGAA
CATTaaagcttgaaaatttcaaaaaataagaacagcccagcctcgccaaa
acttataaaaaattagCCTTTGGAagggaaaaataagaatttttttgctC
ACCCCTAGGGAAATTGGATTTCACTGGCCATAAGTGTAAGACGAAAGAAA
AAGTCACAGTAATCCAAATTTTCCTATTGTTTAAACAGGTTTAAAGAGTC
TGATATTATTTGTAAGTTTCCCTGGATTGAATTTGCTATGATTCGAAACT
AATACCTTTTCTATTCAACAGGGAATGCAGTACGAGCGGTCGGCAAATTT
AAGGGAAAGAAAAAGAAGTTGATGAATGTAACGTTAACGAATTATGAAGA
TGAAGAACTGAAAAGTGGGTTTTACACCAAAGATGTTGTCGAACAAGAAA
ATGAAGAGGAAGATGATTTCTTCACTAATATCATCAAAGCCAAAAGACGT
TTCTCCCTCAAGAGGTTCAGTTTGAAGAAACGGAATCCACGACAAAGGAG
TTATAGTGATTATGGTGGACAACGTGATCGGTTAATCGAGCAAACGAATG
GGATAATTGAGGCACATAATGGCGCAGGTAAAGCGATTGAGGTTCCTGAG
GTTCCAAAGAGCCAGGAGAATTTGATCATTGAGAGTTTTATAAACGAATG
TATGAGAGAAAGCATGCGGAAtcataaaaataataacaaaaacaatCGAG
AAAAAGAACGCCATCGCAGCGATCGCAGCAGTGCGGAGGAAAATAGAGAT
CAAGATGATGAACGTGACAATAAGAGTGGAACATATTCACCAGCGACACA
AAAAGAACGAAAACACGTCACTAGGAGTATTACGATGCCTAACAACGGAT
CACGTTATACGAAAGATTCAGCCGCGGACGACCGCCGCGAGACGATTCCG
CGTGAAGCGAGGCGGAGTGAGGGGGAGGATCGTGTAGAGGAATCACGAAA
GAAAACAAGGAGACCACGAAGTGATGTTGTAGGGATAACAGACATTGCCG
AGAGACAGAAAAGAGCTTCTGAGCGCATGTCAAATTATTATGAGAAAaca
acaaatttgagtcaagaGGAACATCCATTCAGTAGACGAAACGGTATCAA
AAAACATTCACGTCAAGAAAACGGTTATGATTCGGAACACGGTAGTACGT
TGTCTGCATTCGCATTGGTACCCGGTACAGACTTACAACGAAAACTCTCG
CAACACGGCATTAACGATAAAGCCTCTATAGACGTTATAACGAGACAAAC
TCGAACAAACGGGTCACAGAAAAGTAAACCGGACAGAAAATATCCTCCAC
CGTCATCGTCAGCGAGGAACCCAAAACCAACTCATCATAGGCGTTCCTTT
CAAAGTGTAGACAATATATATGCATCTTCTTCAACCTCCTCCATACATCA
AAACAAGCGTTTCTCATCCTCACATATGACGAACAATCTCCAGAATTCTT
TCAGTGCTGATGATATCGATGATACATCTTCACACGTGTTCAAACCTTTG
AAAAGTGagattaaagatggcggcacATTGAACTTTATGGTAACTTCAAC
TCCAAGAGAAATAGTTGAAGATGTTCCAGAGGAACGTGAGGCTGAAGAGG
AAGAAGGATATGCAACTTAtgtttgaaaatggaaattgCTCTCAGCGACT
TTCTTCTAACCAATGTTCAACCCGTTGAACATGAAATGTCAATTCATCAT
TGAAGGTTCAATTTTGGGACCCTCACCGGGACAGCGGaacttttttacta
aaatttagcCTAGATAAATATTGAAGTTTTGCATCCCTTAGGGAAACTGA
AACTATTTAAGTTGATATTTATTgacttatttttgctaaaaattggtTCA
CAGGTCAGACATTTGAAAGACCATTTTATGAAGTTTCTCCTTGTTACAGC
ATTGTTAAATTGCGATGCTTTTATGAGAAactaaattcataaattttaat
GAGGATAGGAGTTTCATACTACTTATAGCTATTTAGAAAATACATGTTCG
AAATTTTGAAGCTCATTATCTCATTCAGAGACATTTTGGCaggtttttaa
atttctaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054277-exon-scaffold_242-1491911889:1565310..1565520 | TCONS_00054277-exon-scaffold_242-1491911889:1565310..1565520 | Clytia hemisphaerica | exon |
| TCONS_00054277-exon-scaffold_242-1510915933:1565310..1565520 | TCONS_00054277-exon-scaffold_242-1510915933:1565310..1565520 | Clytia hemisphaerica | exon |
| TCONS_00054277-exon-scaffold_242-1575043694:1565310..1565520 | TCONS_00054277-exon-scaffold_242-1575043694:1565310..1565520 | Clytia hemisphaerica | exon |
| TCONS_00054277-exon-scaffold_242-1491911889:1568581..1568967 | TCONS_00054277-exon-scaffold_242-1491911889:1568581..1568967 | Clytia hemisphaerica | exon |
| TCONS_00054277-exon-scaffold_242-1510915933:1568581..1568967 | TCONS_00054277-exon-scaffold_242-1510915933:1568581..1568967 | Clytia hemisphaerica | exon |
| TCONS_00054277-exon-scaffold_242-1575043694:1568581..1568967 | TCONS_00054277-exon-scaffold_242-1575043694:1568581..1568967 | Clytia hemisphaerica | exon |
| TCONS_00054277-exon-scaffold_242-1491911889:1570481..1572269 | TCONS_00054277-exon-scaffold_242-1491911889:1570481..1572269 | Clytia hemisphaerica | exon |
| TCONS_00054277-exon-scaffold_242-1510915933:1570481..1572269 | TCONS_00054277-exon-scaffold_242-1510915933:1570481..1572269 | Clytia hemisphaerica | exon |
| TCONS_00054277-exon-scaffold_242-1575043694:1570481..1572269 | TCONS_00054277-exon-scaffold_242-1575043694:1570481..1572269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1565310..1572269 + |
Blast
The following BLAST results are available for this feature:
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