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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054278 ID=TCONS_00054278|Name=TCONS_00054278|organism=Clytia hemisphaerica|type=transcript|length=2582bp
GGGGGCTTTATTTAATTCTGTTTGAGAAAAATGCGGTCTGTATTCGAGGA
ATGGCgatccaaaataaaaaatcttgaaaaataatccgtattttttcgag
aaaaaaaatactcTGAAAAGGCCCGAAAGATGGAGTTTGTATGAATGGAT
GAATTGAGAATTGAGACAAGTAGACAAACCTCTAAAGATTCAAATGTATA
GCTGATGGAGAGTGTTTTCTTTctaatgttgatatttttaaaatattaat
AATGATATAGAGAATTGACTTATGGAAGTTATTTGACAGTGTTTGCAACG
CGAAATGTGTTATAAATGAAAAGAACGAACTGTGAAGAAGAAAAGATCTG
AAGAAGATATTAAATTGAGCAAATCGAAATCTCCGAACTTCTTTCTACCC
ATTCAGgagtAGCGATAGAAGAACAAGGCTTTGGAGAAGGGCTCACATCA
AGCACTAAAGAAAGACTTCGTTTATCCTTATCTGGCACATCGAGCGATTC
ACAAATGTCAGGAACCAAACACGGTAATGGAAACACCTCGCGTGAAGAGC
GGAGAAAAAGTCGGAAGATCAAAACAACGCGATCAGTAGAAACACAGACA
GAAGAAAACTCGTTTTGTCTTTGTTTCATACCAGAGTACAAAGCACAGTT
AGATGAAGAACAAGAACTGGACCCTCGCATTCGTTTAATGTTAGATCAAT
TACACGTGCTTACTGAAGGGAAGGTCACGTGTGTTGTccgaaattttgag
aaaaaaccgAAATGGACTGCTAAACAACGCTGGAAAATGTCAGGGAATGC
AGTACGAGCGGTCGGCAAATTTAAGGGAAAGAAAAAGAAGTTGATGAATG
TAACGTTAACGAATTATGAAGATGAAGAACTGAAAAGTGGGTTTTACACC
AAAGATGTTGTCGAACAAGAAAATGAAGAGGAAGATGATTTCTTCACTAA
TATCATCAAAGCCAAAAGACGTTTCTCCCTCAAGAGGTTCAGTTTGAAGA
AACGGAATCCACGACAAAGGAGTTATAGTGATTATGGTGGACAACGTGAT
CGGTTAATCGAGCAAACGAATGGGATAATTGAGGCACATAATGGCGCAGG
TAAAGCGATTGAGGTTCCTGAGGTTCCAAAGAGCCAGGAGAATTTGATCA
TTGAGAGTTTTATAAACGAATGTATGAGAGAAAGCATGCGGAAtcataaa
aataataacaaaaacaatCGAGAAAAAGAACGCCATCGCAGCGATCGCAG
CAGTGCGGAGGAAAATAGAGATCAAGATGATGAACGTGACAATAAGAGTG
GAACATATTCACCAGCGACACAAAAAGAACGAAAACACGTCACTAGGAGT
ATTACGATGCCTAACAACGGATCACGTTATACGAAAGATTCAGCCGCGGA
CGACCGCCGCGAGACGATTCCGCGTGAAGCGAGGCGGAGTGAGGGGGAGG
ATCGTGTAGAGGAATCACGAAAGAAAACAAGGAGACCACGAAGTGATGTT
GTAGGGATAACAGACATTGCCGAGAGACAGAAAAGAGCTTCTGAGCGCAT
GTCAAATTATTATGAGAAAacaacaaatttgagtcaagaGGAACATCCAT
TCAGTAGACGAAACGGTATCAAAAAACATTCACGTCAAGAAAACGGTTAT
GATTCGGAACACGGTAGTACGTTGTCTGCATTCGCATTGGTACCCGGTAC
AGACTTACAACGAAAACTCTCGCAACACGGCATTAACGATAAAGCCTCTA
TAGACGTTATAACGAGACAAACTCGAACAAACGGGTCACAGAAAAGTAAA
CCGGACAGAAAATATCCTCCACCGTCATCGTCAGCGAGGAACCCAAAACC
AACTCATCATAGGCGTTCCTTTCAAAGTGTAGACAATATATATGCATCTT
CTTCAACCTCCTCCATACATCAAAACAAGCGTTTCTCATCCTCACATATG
ACGAACAATCTCCAGAATTCTTTCAGTGCTGATGATATCGATGATACATC
TTCACACGTGTTCAAACCTTTGAAAAGTGagattaaagatggcggcacAT
TGAACTTTATGGTAACTTCAACTCCAAGAGAAATAGTTGAAGATGTTCCA
GAGGAACGTGAGGCTGAAGAGGAAGAAGGATATGCAACTTAtgtttgaaa
atggaaattgCTCTCAGCGACTTTCTTCTAACCAATGTTCAACCCGTTGA
ACATGAAATGTCAATTCATCATTGAAGGTTCAATTTTGGGACCCTCACCG
GGACAGCGGaacttttttactaaaatttagcCTAGATAAATATTGAAGTT
TTGCATCCCTTAGGGAAACTGAAACTATTTAAGTTGATATTTATTgactt
atttttgctaaaaattggtTCACAGGTCAGACATTTGAAAGACCATTTTA
TGAAGTTTCTCCTTGTTACAGCATTGTTAAATTGCGATGCTTTTATGAGA
AactaaattcataaattttaatGAGGATAGGAGTTTCATACTACTTATAG
CTATTTAGAAAATACATGTTCGAAATTTTGAAGCTCATTATCTCATTCAG
AGACATTTTGGCaggtttttaaatttctaaag Run BLAST on NCBI transcript from alignment at scaffold_242:1565833..1572269+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054278 ID=TCONS_00054278|Name=TCONS_00054278|organism=Clytia hemisphaerica|type=transcript|length=6437bp|location=Sequence derived from alignment at scaffold_242:1565833..1572269+ (Clytia hemisphaerica)
GGGGGCTTTATTTAATTCTGTTTGAGAAAAATGCGGTCTGTATTCGAGGA
ATGGCgatccaaaataaaaaatcttgaaaaataatccgtattttttcgag
aaaaaaaatactcTGAAAAGGCCCGAAAGATGGAGTTTGTATGAATGGAT
GAATTGAGAATTGAGACAAGTAGACAAACCTCTAAAGATTCAAATGTATA
GCTGATGGAGAGTGTTTTCTTTctaatgttgatatttttaaaatattaat
AATGATATAGAGAATTGACTTATGGAAGTTATTTGACAGTGTTTGCAACG
CGAAATGTGTTATAAATGAAAAGAACGAACTGTGAAGAAGAAAAGATCTG
AAGAAGATATTAAATTGAGCAAATCGAAATCTCCGAACTTCTTTCTACCC
ATTCAGGTCGGTAACGTTTTTATAAAGTCTTTCGAAATCACTTTTAGAGT
ACATTGAGGACACAAAGAGGTCCAGAAGCTGACTGAGTGGCCTCTTTTAA
GAGCAAAATCTTTGTCTCTGAAGTGCTCTGAAGTTTCACTTCAtgaaaaa
gatcattttggagCTGACAGGTCGTGAAACTTGAATAAGATGGAATTGTT
CGAAGGCAATCATTTTGAAATGATTTCGTCCATTATACGTAAGTTGAGAG
ACTGAACATGAATTTTGTTTCACTATTACACATTTCCTTAAGGGCTTTCC
TTAGAAATTCAATTGATGGGTTTGGAGTTAAAGGGCTCAGTGCCCCGATA
GAACTTTTTCCcctcaatggggatgaaaatttctatcaaaatgccaatgg
ggatagaaaatctattgtttccagctcgaaaattccagtggggatggttt
tggaatacaattttttacattcagttttcaatggggataaaatcatagag
caatttcgcactggggttgaaattgtaggatattttttccaccggggtgg
ggggtccaccgggtctgtgaaacaggggtgtaggGAAGCATAAGAAGAAG
ATAAAGCCAAAAATATGATTTCGTCATTTATACGTAAGTCTGCGTAATTA
GAGAGCGACAGAACGTGAATTTGGCTTCACTATTACACGTATGGTTCAAG
TCATCTTAGAAACTCACTTGACGAGTCTAAAGTTTAAAACGAGAAGAATA
AAAGATGAGGGTACATAAGGCAAAAAATTAAATGTATACAAATTACATAA
ATTTGAGACCGGTATGAAATTTTAAAGTCTAATTTTAGAGTCTAATTATA
GGTCGGAAAAATTGTCATGTCGGCATTTGAATCCCTCTGAGAAAAGCTCC
TTTTGAATGGTATAGTATCATGCTATAATACAAAACAGGTCTGAAAATAT
CACACTAAAGATATTCGTAACAACATGACCAGGTCAACCATTCTGAGAAA
GgttaaatcaaataaataaataacagGGAGCTATGTCTCTTTGTAAATGA
TACAGTAAAATGTCACTGTTAGGAGAACTATTCAATGAGTGATAAGGCTG
CCTCGTTTTAATACCATAGGAGGCACTGCAGTGTAATGAAAGCAATATAT
TGTAGCTAACATTAagaaagaaatagaaaaaacaatttttgcacACTGAG
TGAACTGTTGTACTTTTAATATTGATTTTATGTATTAGCaattttgagga
cggtagagtggcTCAATTAAACCGCAAAATCTAGGACGGTTAAGAGTGCT
GATTTACCTTCGTTCTCAGTCAATCAGGACCGAGTTTCTGTATAGGAGGA
CATCGAGagcgacggtaagtgaagtcgatgcaaaacaaagtcgatagttg
atgtacggctggctctatatcgcctttacTGACcaaaacagacgacggta
ttttggtatttttaaccGTCTCTGAGTAAAGTGGACCGAAATTTTAGGAC
ATGTCAATTTTActttataccgtctccttcaatttatctcgaatacatga
ACTCGCTAGGATCTAGACAAATGAGAAGCTAACAGTCTCTGTTGCTGAAA
AACACAGatgcataaactcgctaatatgaATCATTTGGCTGTTTGACAAT
AATTAGCAGTGTCTAGAGTCAGCTGTTTATAAACAACCGCAAAAAAGGAT
TCCATTTTGTACGGTAATGACTTCCTCAGAGTGGTAAAGAGGTTGGTTTT
GGTAGAAAAAATGTGTCGGTGTGATTTTCGTTCGGTGATTTATGACCTTA
TTCTTCATAAGAACGTTTTTAAGGATAGTAAAATCGAGAACAGACTTGTT
AGATCCTAATGTAATGAAAAGATTATACGCAAATTTTGAAACGTTCCGAT
TAGGCTTAGTGGAAAGCAAGAAACGACATCGTGTAGAAAGGTTATTCGAA
ATTTAGTGTAGGACTTCTTCACTTCACTTCTGGAAAAcattatttcttaa
aagaaaacttGATTTCTTAATTATGCTTTAAAGCTAGTTCAACGATCAAT
ATACTTATTTTTTGACATATAAACCTGCGTTACGCAGCAGGACAACAATT
ATTCGAAATAGACTTTTACATGATACGGAACATATACAATTTGGTGCTTT
GTACTGCATGTAGGAGTTAGATACTTTCTAGAACGTAGTTTGAAAGAAGT
TGTCCATAACTNTGATACGGAACATATACAATTTGGTGCTTTGTACTGCA
TGTAGGAGTTAGATACTTTCTAGAACGTAGTTTGAAAGAAGTTGTCCATA
ACtgaatttcaaaagttattaataaaaacgaatggatttttttttcagga
gtAGCGATAGAAGAACAAGGCTTTGGAGAAGGGCTCACATCAAGCACTAA
AGAAAGACTTCGTTTATCCTTATCTGGCACATCGAGCGATTCACAAATGT
CAGGAACCAAACACGGTAATGGAAACACCTCGCGTGAAGAGCGGAGAAAA
AGTCGGAAGATCAAAACAACGCGATCAGTAGAAACACAGACAGAAGAAAA
CTCGTTTTGTCTTTGTTTCATACCAGAGTACAAAGCACAGTTAGATGAAG
AACAAGAACTGGACCCTCGCATTCGTTTAATGTTAGATCAATTACACGTG
CTTACTGAAGGGAAGGTCACGTGTGTTGTccgaaattttgagaaaaaacc
gAAATGGACTGCTAAACAACGCTGGAAAATGTCAGGTAATTTTagatcac
tgacctttatcataccctggaccaagcttcatCCTCCATGTTTGATAGGA
GCTTTTTCCCATGccatactcttgtctcccgtatatacggggggtccgaa
taagcaggggggtaggaaaattttctaaattctaataagcgggggggatg
gaataagaggggggggtaGTTTAAAGACAGATTTTTTTCTAACtggtatc
aatttcaacaacaaaaaagaaactttaacaaataaacACGTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGGACCTTTttgtctcttaacaattagcgg
ggggacgtctattcgggagacaagagtagtgGGAGCACGACTCGATGTGG
GTCAATTtataattcaatgaaattttctgtttaaagattttttcacccac
attgagtagtgctaccattagagTATCAATTTAAAAgaactctgatcaaa
gattttgcttgggcCGGGATCTGCCGGGATCGAGAAattttgtccagggt
atataaaggtcagtggtctaGATAACCAATCTATTCAAATTATCATAAAC
TGGACAAATGATGGTTTCACTTCGAGGGAAAGTTTTTAGATGAAATATAA
ATTATTGATGAAGATAGGGTCTTTGCGGTTCGAACATTGATAatgacttt
aaataaaaaaacatcttttcTGCTATCAAAAATAAACTGAATGTGACTGC
ATTAAAACCTCTACCTACATTTTGGCAAAAGAACATCAACATCGCTTGGG
AGACTTTGGTACATGAATCTAGCAACTCCTCCCAACCTCCCAACATAGCT
TCTTTTGAAATGGACAACACGAAACCCACCCAAAATAAAGTTCTAACCCC
AGGTACTAATTTTGCAGGATgcgaaagttttcgaaaatatgaaaaaatat
aatttagtGAAAACNACTAATTTTGCAGGATgcgaaagttttcgaaaata
tgaaaaaatataatttagtgaaaaccaattttcaagaaaaccaaaaccaa
gaacaattttataagaacgattttataagaacgtaaggctaaaaaatttg
ccaaaatctaagaacaatttaaaaccGCCCAAGTCTCAGACTCTAGAGAT
TACTAAGAAAGTACAGGTTTTAAACCCATTTCAGactttaagtaaagaaa
ctaagcgtattaaGAACGTCGTAAGAACATTaaagcttgaaaatttcaaa
aaataagaacagcccagcctcgccaaaacttataaaaaattagCCTTTGG
AagggaaaaataagaatttttttgctCACCCCTAGGGAAATTGGATTTCA
CTGGCCATAAGTGTAAGACGAAAGAAAAAGTCACAGTAATCCAAATTTTC
CTATTGTTTAAACAGGTTTAAAGAGTCTGATATTATTTGTAAGTTTCCCT
GGATTGAATTTGCTATGATTCGAAACTAATACCTTTTCTATTCAACAGGG
AATGCAGTACGAGCGGTCGGCAAATTTAAGGGAAAGAAAAAGAAGTTGAT
GAATGTAACGTTAACGAATTATGAAGATGAAGAACTGAAAAGTGGGTTTT
ACACCAAAGATGTTGTCGAACAAGAAAATGAAGAGGAAGATGATTTCTTC
ACTAATATCATCAAAGCCAAAAGACGTTTCTCCCTCAAGAGGTTCAGTTT
GAAGAAACGGAATCCACGACAAAGGAGTTATAGTGATTATGGTGGACAAC
GTGATCGGTTAATCGAGCAAACGAATGGGATAATTGAGGCACATAATGGC
GCAGGTAAAGCGATTGAGGTTCCTGAGGTTCCAAAGAGCCAGGAGAATTT
GATCATTGAGAGTTTTATAAACGAATGTATGAGAGAAAGCATGCGGAAtc
ataaaaataataacaaaaacaatCGAGAAAAAGAACGCCATCGCAGCGAT
CGCAGCAGTGCGGAGGAAAATAGAGATCAAGATGATGAACGTGACAATAA
GAGTGGAACATATTCACCAGCGACACAAAAAGAACGAAAACACGTCACTA
GGAGTATTACGATGCCTAACAACGGATCACGTTATACGAAAGATTCAGCC
GCGGACGACCGCCGCGAGACGATTCCGCGTGAAGCGAGGCGGAGTGAGGG
GGAGGATCGTGTAGAGGAATCACGAAAGAAAACAAGGAGACCACGAAGTG
ATGTTGTAGGGATAACAGACATTGCCGAGAGACAGAAAAGAGCTTCTGAG
CGCATGTCAAATTATTATGAGAAAacaacaaatttgagtcaagaGGAACA
TCCATTCAGTAGACGAAACGGTATCAAAAAACATTCACGTCAAGAAAACG
GTTATGATTCGGAACACGGTAGTACGTTGTCTGCATTCGCATTGGTACCC
GGTACAGACTTACAACGAAAACTCTCGCAACACGGCATTAACGATAAAGC
CTCTATAGACGTTATAACGAGACAAACTCGAACAAACGGGTCACAGAAAA
GTAAACCGGACAGAAAATATCCTCCACCGTCATCGTCAGCGAGGAACCCA
AAACCAACTCATCATAGGCGTTCCTTTCAAAGTGTAGACAATATATATGC
ATCTTCTTCAACCTCCTCCATACATCAAAACAAGCGTTTCTCATCCTCAC
ATATGACGAACAATCTCCAGAATTCTTTCAGTGCTGATGATATCGATGAT
ACATCTTCACACGTGTTCAAACCTTTGAAAAGTGagattaaagatggcgg
cacATTGAACTTTATGGTAACTTCAACTCCAAGAGAAATAGTTGAAGATG
TTCCAGAGGAACGTGAGGCTGAAGAGGAAGAAGGATATGCAACTTAtgtt
tgaaaatggaaattgCTCTCAGCGACTTTCTTCTAACCAATGTTCAACCC
GTTGAACATGAAATGTCAATTCATCATTGAAGGTTCAATTTTGGGACCCT
CACCGGGACAGCGGaacttttttactaaaatttagcCTAGATAAATATTG
AAGTTTTGCATCCCTTAGGGAAACTGAAACTATTTAAGTTGATATTTATT
gacttatttttgctaaaaattggtTCACAGGTCAGACATTTGAAAGACCA
TTTTATGAAGTTTCTCCTTGTTACAGCATTGTTAAATTGCGATGCTTTTA
TGAGAAactaaattcataaattttaatGAGGATAGGAGTTTCATACTACT
TATAGCTATTTAGAAAATACATGTTCGAAATTTTGAAGCTCATTATCTCA
TTCAGAGACATTTTGGCaggtttttaaatttctaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054278-exon-scaffold_242-1491911889:1565833..1566238 | TCONS_00054278-exon-scaffold_242-1491911889:1565833..1566238 | Clytia hemisphaerica | exon |
| TCONS_00054278-exon-scaffold_242-1510915933:1565833..1566238 | TCONS_00054278-exon-scaffold_242-1510915933:1565833..1566238 | Clytia hemisphaerica | exon |
| TCONS_00054278-exon-scaffold_242-1575043694:1565833..1566238 | TCONS_00054278-exon-scaffold_242-1575043694:1565833..1566238 | Clytia hemisphaerica | exon |
| TCONS_00054278-exon-scaffold_242-1491911889:1568581..1568967 | TCONS_00054278-exon-scaffold_242-1491911889:1568581..1568967 | Clytia hemisphaerica | exon |
| TCONS_00054278-exon-scaffold_242-1510915933:1568581..1568967 | TCONS_00054278-exon-scaffold_242-1510915933:1568581..1568967 | Clytia hemisphaerica | exon |
| TCONS_00054278-exon-scaffold_242-1575043694:1568581..1568967 | TCONS_00054278-exon-scaffold_242-1575043694:1568581..1568967 | Clytia hemisphaerica | exon |
| TCONS_00054278-exon-scaffold_242-1491911889:1570481..1572269 | TCONS_00054278-exon-scaffold_242-1491911889:1570481..1572269 | Clytia hemisphaerica | exon |
| TCONS_00054278-exon-scaffold_242-1510915933:1570481..1572269 | TCONS_00054278-exon-scaffold_242-1510915933:1570481..1572269 | Clytia hemisphaerica | exon |
| TCONS_00054278-exon-scaffold_242-1575043694:1570481..1572269 | TCONS_00054278-exon-scaffold_242-1575043694:1570481..1572269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1565833..1572269 + |
Blast
The following BLAST results are available for this feature:
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