TCONS_00054279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054279
Unique NameTCONS_00054279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054279 ID=TCONS_00054279|Name=TCONS_00054279|organism=Clytia hemisphaerica|type=transcript|length=2323bp
CTCTTTTAAGAGCAAAATCTTTGTCTCTGAAGTGCTCTGAAGTTTCACTT
CAtgaaaaagatcattttggagCTGACAGGTCGTGAAACTTGAATAAGAT
GGAATTGTTCGAAGGCAATCATTTTGAAATGATTTCGTCCATTATACgag
tAGCGATAGAAGAACAAGGCTTTGGAGAAGGGCTCACATCAAGCACTAAA
GAAAGACTTCGTTTATCCTTATCTGGCACATCGAGCGATTCACAAATGTC
AGGAACCAAACACGGTAATGGAAACACCTCGCGTGAAGAGCGGAGAAAAA
GTCGGAAGATCAAAACAACGCGATCAGTAGAAACACAGACAGAAGAAAAC
TCGTTTTGTCTTTGTTTCATACCAGAGTACAAAGCACAGTTAGATGAAGA
ACAAGAACTGGACCCTCGCATTCGTTTAATGTTAGATCAATTACACGTGC
TTACTGAAGGGAAGGTCACGTGTGTTGTccgaaattttgagaaaaaaccg
AAATGGACTGCTAAACAACGCTGGAAAATGTCAGGGAATGCAGTACGAGC
GGTCGGCAAATTTAAGGGAAAGAAAAAGAAGTTGATGAATGTAACGTTAA
CGAATTATGAAGATGAAGAACTGAAAAGTGGGTTTTACACCAAAGATGTT
GTCGAACAAGAAAATGAAGAGGAAGATGATTTCTTCACTAATATCATCAA
AGCCAAAAGACGTTTCTCCCTCAAGAGGTTCAGTTTGAAGAAACGGAATC
CACGACAAAGGAGTTATAGTGATTATGGTGGACAACGTGATCGGTTAATC
GAGCAAACGAATGGGATAATTGAGGCACATAATGGCGCAGGTAAAGCGAT
TGAGGTTCCTGAGGTTCCAAAGAGCCAGGAGAATTTGATCATTGAGAGTT
TTATAAACGAATGTATGAGAGAAAGCATGCGGAAtcataaaaataataac
aaaaacaatCGAGAAAAAGAACGCCATCGCAGCGATCGCAGCAGTGCGGA
GGAAAATAGAGATCAAGATGATGAACGTGACAATAAGAGTGGAACATATT
CACCAGCGACACAAAAAGAACGAAAACACGTCACTAGGAGTATTACGATG
CCTAACAACGGATCACGTTATACGAAAGATTCAGCCGCGGACGACCGCCG
CGAGACGATTCCGCGTGAAGCGAGGCGGAGTGAGGGGGAGGATCGTGTAG
AGGAATCACGAAAGAAAACAAGGAGACCACGAAGTGATGTTGTAGGGATA
ACAGACATTGCCGAGAGACAGAAAAGAGCTTCTGAGCGCATGTCAAATTA
TTATGAGAAAacaacaaatttgagtcaagaGGAACATCCATTCAGTAGAC
GAAACGGTATCAAAAAACATTCACGTCAAGAAAACGGTTATGATTCGGAA
CACGGTAGTACGTTGTCTGCATTCGCATTGGTACCCGGTACAGACTTACA
ACGAAAACTCTCGCAACACGGCATTAACGATAAAGCCTCTATAGACGTTA
TAACGAGACAAACTCGAACAAACGGGTCACAGAAAAGTAAACCGGACAGA
AAATATCCTCCACCGTCATCGTCAGCGAGGAACCCAAAACCAACTCATCA
TAGGCGTTCCTTTCAAAGTGTAGACAATATATATGCATCTTCTTCAACCT
CCTCCATACATCAAAACAAGCGTTTCTCATCCTCACATATGACGAACAAT
CTCCAGAATTCTTTCAGTGCTGATGATATCGATGATACATCTTCACACGT
GTTCAAACCTTTGAAAAGTGagattaaagatggcggcacATTGAACTTTA
TGGTAACTTCAACTCCAAGAGAAATAGTTGAAGATGTTCCAGAGGAACGT
GAGGCTGAAGAGGAAGAAGGATATGCAACTTAtgtttgaaaatggaaatt
gCTCTCAGCGACTTTCTTCTAACCAATGTTCAACCCGTTGAACATGAAAT
GTCAATTCATCATTGAAGGTTCAATTTTGGGACCCTCACCGGGACAGCGG
aacttttttactaaaatttagcCTAGATAAATATTGAAGTTTTGCATCCC
TTAGGGAAACTGAAACTATTTAAGTTGATATTTATTgacttatttttgct
aaaaattggtTCACAGGTCAGACATTTGAAAGACCATTTTATGAAGTTTC
TCCTTGTTACAGCATTGTTAAATTGCGATGCTTTTATGAGAAactaaatt
cataaattttaatGAGGATAGGAGTTTCATACTACTTATAGCTATTTAGA
AAATACATGTTCGAAATTTTGAAGCTCATTATCTCATTCAGAGACATTTT
GGCaggtttttaaatttctaaag
Run BLAST on NCBI

protein sequence of TCONS_00054279-protein

>TCONS_00054279-protein ID=TCONS_00054279-protein|Name=TCONS_00054279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=596bp
MELFEGNHFEMISSIIRVAIEEQGFGEGLTSSTKERLRLSLSGTSSDSQM
SGTKHGNGNTSREERRKSRKIKTTRSVETQTEENSFCLCFIPEYKAQLDE
EQELDPRIRLMLDQLHVLTEGKVTCVVRNFEKKPKWTAKQRWKMSGNAVR
AVGKFKGKKKKLMNVTLTNYEDEELKSGFYTKDVVEQENEEEDDFFTNII
KAKRRFSLKRFSLKKRNPRQRSYSDYGGQRDRLIEQTNGIIEAHNGAGKA
IEVPEVPKSQENLIIESFINECMRESMRNHKNNNKNNREKERHRSDRSSA
EENRDQDDERDNKSGTYSPATQKERKHVTRSITMPNNGSRYTKDSAADDR
RETIPREARRSEGEDRVEESRKKTRRPRSDVVGITDIAERQKRASERMSN
YYEKTTNLSQEEHPFSRRNGIKKHSRQENGYDSEHGSTLSAFALVPGTDL
QRKLSQHGINDKASIDVITRQTRTNGSQKSKPDRKYPPPSSSARNPKPTH
HRRSFQSVDNIYASSSTSSIHQNKRFSSSHMTNNLQNSFSADDIDDTSSH
VFKPLKSEIKDGGTLNFMVTSTPREIVEDVPEEREAEEEEGYATYV
Run BLAST on NCBI

transcript from alignment at scaffold_242:1566324..1572269+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054279 ID=TCONS_00054279|Name=TCONS_00054279|organism=Clytia hemisphaerica|type=transcript|length=5946bp|location=Sequence derived from alignment at scaffold_242:1566324..1572269+ (Clytia hemisphaerica)
CTCTTTTAAGAGCAAAATCTTTGTCTCTGAAGTGCTCTGAAGTTTCACTT CAtgaaaaagatcattttggagCTGACAGGTCGTGAAACTTGAATAAGAT GGAATTGTTCGAAGGCAATCATTTTGAAATGATTTCGTCCATTATACGTA AGTTGAGAGACTGAACATGAATTTTGTTTCACTATTACACATTTCCTTAA GGGCTTTCCTTAGAAATTCAATTGATGGGTTTGGAGTTAAAGGGCTCAGT GCCCCGATAGAACTTTTTCCcctcaatggggatgaaaatttctatcaaaa tgccaatggggatagaaaatctattgtttccagctcgaaaattccagtgg ggatggttttggaatacaattttttacattcagttttcaatggggataaa atcatagagcaatttcgcactggggttgaaattgtaggatattttttcca ccggggtggggggtccaccgggtctgtgaaacaggggtgtaggGAAGCAT AAGAAGAAGATAAAGCCAAAAATATGATTTCGTCATTTATACGTAAGTCT GCGTAATTAGAGAGCGACAGAACGTGAATTTGGCTTCACTATTACACGTA TGGTTCAAGTCATCTTAGAAACTCACTTGACGAGTCTAAAGTTTAAAACG AGAAGAATAAAAGATGAGGGTACATAAGGCAAAAAATTAAATGTATACAA ATTACATAAATTTGAGACCGGTATGAAATTTTAAAGTCTAATTTTAGAGT CTAATTATAGGTCGGAAAAATTGTCATGTCGGCATTTGAATCCCTCTGAG AAAAGCTCCTTTTGAATGGTATAGTATCATGCTATAATACAAAACAGGTC TGAAAATATCACACTAAAGATATTCGTAACAACATGACCAGGTCAACCAT TCTGAGAAAGgttaaatcaaataaataaataacagGGAGCTATGTCTCTT TGTAAATGATACAGTAAAATGTCACTGTTAGGAGAACTATTCAATGAGTG ATAAGGCTGCCTCGTTTTAATACCATAGGAGGCACTGCAGTGTAATGAAA GCAATATATTGTAGCTAACATTAagaaagaaatagaaaaaacaatttttg cacACTGAGTGAACTGTTGTACTTTTAATATTGATTTTATGTATTAGCaa ttttgaggacggtagagtggcTCAATTAAACCGCAAAATCTAGGACGGTT AAGAGTGCTGATTTACCTTCGTTCTCAGTCAATCAGGACCGAGTTTCTGT ATAGGAGGACATCGAGagcgacggtaagtgaagtcgatgcaaaacaaagt cgatagttgatgtacggctggctctatatcgcctttacTGACcaaaacag acgacggtattttggtatttttaaccGTCTCTGAGTAAAGTGGACCGAAA TTTTAGGACATGTCAATTTTActttataccgtctccttcaatttatctcg aatacatgaACTCGCTAGGATCTAGACAAATGAGAAGCTAACAGTCTCTG TTGCTGAAAAACACAGatgcataaactcgctaatatgaATCATTTGGCTG TTTGACAATAATTAGCAGTGTCTAGAGTCAGCTGTTTATAAACAACCGCA AAAAAGGATTCCATTTTGTACGGTAATGACTTCCTCAGAGTGGTAAAGAG GTTGGTTTTGGTAGAAAAAATGTGTCGGTGTGATTTTCGTTCGGTGATTT ATGACCTTATTCTTCATAAGAACGTTTTTAAGGATAGTAAAATCGAGAAC AGACTTGTTAGATCCTAATGTAATGAAAAGATTATACGCAAATTTTGAAA CGTTCCGATTAGGCTTAGTGGAAAGCAAGAAACGACATCGTGTAGAAAGG TTATTCGAAATTTAGTGTAGGACTTCTTCACTTCACTTCTGGAAAAcatt atttcttaaaagaaaacttGATTTCTTAATTATGCTTTAAAGCTAGTTCA ACGATCAATATACTTATTTTTTGACATATAAACCTGCGTTACGCAGCAGG ACAACAATTATTCGAAATAGACTTTTACATGATACGGAACATATACAATT TGGTGCTTTGTACTGCATGTAGGAGTTAGATACTTTCTAGAACGTAGTTT GAAAGAAGTTGTCCATAACTNTGATACGGAACATATACAATTTGGTGCTT TGTACTGCATGTAGGAGTTAGATACTTTCTAGAACGTAGTTTGAAAGAAG TTGTCCATAACtgaatttcaaaagttattaataaaaacgaatggattttt ttttcaggagtAGCGATAGAAGAACAAGGCTTTGGAGAAGGGCTCACATC AAGCACTAAAGAAAGACTTCGTTTATCCTTATCTGGCACATCGAGCGATT CACAAATGTCAGGAACCAAACACGGTAATGGAAACACCTCGCGTGAAGAG CGGAGAAAAAGTCGGAAGATCAAAACAACGCGATCAGTAGAAACACAGAC AGAAGAAAACTCGTTTTGTCTTTGTTTCATACCAGAGTACAAAGCACAGT TAGATGAAGAACAAGAACTGGACCCTCGCATTCGTTTAATGTTAGATCAA TTACACGTGCTTACTGAAGGGAAGGTCACGTGTGTTGTccgaaattttga gaaaaaaccgAAATGGACTGCTAAACAACGCTGGAAAATGTCAGGTAATT TTagatcactgacctttatcataccctggaccaagcttcatCCTCCATGT TTGATAGGAGCTTTTTCCCATGccatactcttgtctcccgtatatacggg gggtccgaataagcaggggggtaggaaaattttctaaattctaataagcg ggggggatggaataagaggggggggtaGTTTAAAGACAGATTTTTTTCTA ACtggtatcaatttcaacaacaaaaaagaaactttaacaaataaacACGT NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTttgtctcttaac aattagcggggggacgtctattcgggagacaagagtagtgGGAGCACGAC TCGATGTGGGTCAATTtataattcaatgaaattttctgtttaaagatttt ttcacccacattgagtagtgctaccattagagTATCAATTTAAAAgaact ctgatcaaagattttgcttgggcCGGGATCTGCCGGGATCGAGAAatttt gtccagggtatataaaggtcagtggtctaGATAACCAATCTATTCAAATT ATCATAAACTGGACAAATGATGGTTTCACTTCGAGGGAAAGTTTTTAGAT GAAATATAAATTATTGATGAAGATAGGGTCTTTGCGGTTCGAACATTGAT AatgactttaaataaaaaaacatcttttcTGCTATCAAAAATAAACTGAA TGTGACTGCATTAAAACCTCTACCTACATTTTGGCAAAAGAACATCAACA TCGCTTGGGAGACTTTGGTACATGAATCTAGCAACTCCTCCCAACCTCCC AACATAGCTTCTTTTGAAATGGACAACACGAAACCCACCCAAAATAAAGT TCTAACCCCAGGTACTAATTTTGCAGGATgcgaaagttttcgaaaatatg aaaaaatataatttagtGAAAACNACTAATTTTGCAGGATgcgaaagttt tcgaaaatatgaaaaaatataatttagtgaaaaccaattttcaagaaaac caaaaccaagaacaattttataagaacgattttataagaacgtaaggcta aaaaatttgccaaaatctaagaacaatttaaaaccGCCCAAGTCTCAGAC TCTAGAGATTACTAAGAAAGTACAGGTTTTAAACCCATTTCAGactttaa gtaaagaaactaagcgtattaaGAACGTCGTAAGAACATTaaagcttgaa aatttcaaaaaataagaacagcccagcctcgccaaaacttataaaaaatt agCCTTTGGAagggaaaaataagaatttttttgctCACCCCTAGGGAAAT TGGATTTCACTGGCCATAAGTGTAAGACGAAAGAAAAAGTCACAGTAATC CAAATTTTCCTATTGTTTAAACAGGTTTAAAGAGTCTGATATTATTTGTA AGTTTCCCTGGATTGAATTTGCTATGATTCGAAACTAATACCTTTTCTAT TCAACAGGGAATGCAGTACGAGCGGTCGGCAAATTTAAGGGAAAGAAAAA GAAGTTGATGAATGTAACGTTAACGAATTATGAAGATGAAGAACTGAAAA GTGGGTTTTACACCAAAGATGTTGTCGAACAAGAAAATGAAGAGGAAGAT GATTTCTTCACTAATATCATCAAAGCCAAAAGACGTTTCTCCCTCAAGAG GTTCAGTTTGAAGAAACGGAATCCACGACAAAGGAGTTATAGTGATTATG GTGGACAACGTGATCGGTTAATCGAGCAAACGAATGGGATAATTGAGGCA CATAATGGCGCAGGTAAAGCGATTGAGGTTCCTGAGGTTCCAAAGAGCCA GGAGAATTTGATCATTGAGAGTTTTATAAACGAATGTATGAGAGAAAGCA TGCGGAAtcataaaaataataacaaaaacaatCGAGAAAAAGAACGCCAT CGCAGCGATCGCAGCAGTGCGGAGGAAAATAGAGATCAAGATGATGAACG TGACAATAAGAGTGGAACATATTCACCAGCGACACAAAAAGAACGAAAAC ACGTCACTAGGAGTATTACGATGCCTAACAACGGATCACGTTATACGAAA GATTCAGCCGCGGACGACCGCCGCGAGACGATTCCGCGTGAAGCGAGGCG GAGTGAGGGGGAGGATCGTGTAGAGGAATCACGAAAGAAAACAAGGAGAC CACGAAGTGATGTTGTAGGGATAACAGACATTGCCGAGAGACAGAAAAGA GCTTCTGAGCGCATGTCAAATTATTATGAGAAAacaacaaatttgagtca agaGGAACATCCATTCAGTAGACGAAACGGTATCAAAAAACATTCACGTC AAGAAAACGGTTATGATTCGGAACACGGTAGTACGTTGTCTGCATTCGCA TTGGTACCCGGTACAGACTTACAACGAAAACTCTCGCAACACGGCATTAA CGATAAAGCCTCTATAGACGTTATAACGAGACAAACTCGAACAAACGGGT CACAGAAAAGTAAACCGGACAGAAAATATCCTCCACCGTCATCGTCAGCG AGGAACCCAAAACCAACTCATCATAGGCGTTCCTTTCAAAGTGTAGACAA TATATATGCATCTTCTTCAACCTCCTCCATACATCAAAACAAGCGTTTCT CATCCTCACATATGACGAACAATCTCCAGAATTCTTTCAGTGCTGATGAT ATCGATGATACATCTTCACACGTGTTCAAACCTTTGAAAAGTGagattaa agatggcggcacATTGAACTTTATGGTAACTTCAACTCCAAGAGAAATAG TTGAAGATGTTCCAGAGGAACGTGAGGCTGAAGAGGAAGAAGGATATGCA ACTTAtgtttgaaaatggaaattgCTCTCAGCGACTTTCTTCTAACCAAT GTTCAACCCGTTGAACATGAAATGTCAATTCATCATTGAAGGTTCAATTT TGGGACCCTCACCGGGACAGCGGaacttttttactaaaatttagcCTAGA TAAATATTGAAGTTTTGCATCCCTTAGGGAAACTGAAACTATTTAAGTTG ATATTTATTgacttatttttgctaaaaattggtTCACAGGTCAGACATTT GAAAGACCATTTTATGAAGTTTCTCCTTGTTACAGCATTGTTAAATTGCG ATGCTTTTATGAGAAactaaattcataaattttaatGAGGATAGGAGTTT CATACTACTTATAGCTATTTAGAAAATACATGTTCGAAATTTTGAAGCTC ATTATCTCATTCAGAGACATTTTGGCaggtttttaaatttctaaag

Coding sequence (CDS) from alignment at scaffold_242:1566324..1572269+

>TCONS_00054279 ID=TCONS_00054279|Name=TCONS_00054279|organism=Clytia hemisphaerica|type=CDS|length=5373bp|location=Sequence derived from alignment at scaffold_242:1566324..1572269+ (Clytia hemisphaerica)
ATGGAATTGTTCGAAGGCAATCATTTTGAAATGATTTCGTCCATTATACg
agtAGCGATAGAAGAACAAGGCTTTGGAGAAGGGCTCACATCAAGCACTA
AAGAAAGACTTCGTTTATCCTTATCTGGCACATCGAGCGATTCACAAATG
TCAGGAACCAAACACGGTAATGGAAACACCTCGCGTGAAGAGCGGAGAAA
AAGTCGGAAGATCAAAACAACGCGATCAGTAGAAACACAGACAGAAGAAA
ACTCGTTTTGTCTTTGTTTCATACCAGAGTACAAAGCACAGTTAGATGAA
GAACAAGAACTGGACCCTCGCATTCGTTTAATGTTAGATCAATTACACGT
GCTTACTGAAGGGAAGGTCACGTGTGTTGTccgaaattttgagaaaaaac
cgAAATGGACTGCTAAACAACGCTGGAAAATGTCAGGGAATGCAGTACGA
GCGGTCGGCAAATTTAAGGGAAAGAAAAAGAAGTTGATGAATGTAACGTT
AACGAATTATGAAGATGAAGAACTGAAAAGTGGGTTTTACACCAAAGATG
TTGTCGAACAAGAAAATGAAGAGGAAGATGATTTCTTCACTAATATCATC
AAAGCCAAAAGACGTTTCTCCCTCAAGAGGTTCAGTTTGAAGAAACGGAA
TCCACGACAAAGGAGTTATAGTGATTATGGTGGACAACGTGATCGGTTAA
TCGAGCAAACGAATGGGATAATTGAGGCACATAATGGCGCAGGTAAAGCG
ATTGAGGTTCCTGAGGTTCCAAAGAGCCAGGAGAATTTGATCATTGAGAG
TTTTATAAACGAATGTATGAGAGAAAGCATGCGGAAtcataaaaataata
acaaaaacaatCGAGAAAAAGAACGCCATCGCAGCGATCGCAGCAGTGCG
GAGGAAAATAGAGATCAAGATGATGAACGTGACAATAAGAGTGGAACATA
TTCACCAGCGACACAAAAAGAACGAAAACACGTCACTAGGAGTATTACGA
TGCCTAACAACGGATCACGTTATACGAAAGATTCAGCCGCGGACGACCGC
CGCGAGACGATTCCGCGTGAAGCGAGGCGGAGTGAGGGGGAGGATCGTGT
AGAGGAATCACGAAAGAAAACAAGGAGACCACGAAGTGATGTTGTAGGGA
TAACAGACATTGCCGAGAGACAGAAAAGAGCTTCTGAGCGCATGTCAAAT
TATTATGAGAAAacaacaaatttgagtcaagaGGAACATCCATTCAGTAG
ACGAAACGGTATCAAAAAACATTCACGTCAAGAAAACGGTTATGATTCGG
AACACGGTAGTACGTTGTCTGCATTCGCATTGGTACCCGGTACAGACTTA
CAACGAAAACTCTCGCAACACGGCATTAACGATAAAGCCTCTATAGACGT
TATAACGAGACAAACTCGAACAAACGGGTCACAGAAAAGTAAACCGGACA
GAAAATATCCTCCACCGTCATCGTCAGCGAGGAACCCAAAACCAACTCAT
CATAGGCGTTCCTTTCAAAGTGTAGACAATATATATGCATCTTCTTCAAC
CTCCTCCATACATCAAAACAAGCGTTTCTCATCCTCACATATGACGAACA
ATCTCCAGAATTCTTTCAGTGCTGATGATATCGATGATACATCTTCACAC
GTGTTCAAACCTTTGAAAAGTGagattaaagatggcggcacATTGAACTT
TATGGTAACTTCAACTCCAAGAGAAATAGTTGAAGATGTTCCAGAGGAAC
GTGAGGCTGAAGAGGAAGAAGGATATGCAACTTAtgtttgaATGGAATTG
TTCGAAGGCAATCATTTTGAAATGATTTCGTCCATTATACgagtAGCGAT
AGAAGAACAAGGCTTTGGAGAAGGGCTCACATCAAGCACTAAAGAAAGAC
TTCGTTTATCCTTATCTGGCACATCGAGCGATTCACAAATGTCAGGAACC
AAACACGGTAATGGAAACACCTCGCGTGAAGAGCGGAGAAAAAGTCGGAA
GATCAAAACAACGCGATCAGTAGAAACACAGACAGAAGAAAACTCGTTTT
GTCTTTGTTTCATACCAGAGTACAAAGCACAGTTAGATGAAGAACAAGAA
CTGGACCCTCGCATTCGTTTAATGTTAGATCAATTACACGTGCTTACTGA
AGGGAAGGTCACGTGTGTTGTccgaaattttgagaaaaaaccgAAATGGA
CTGCTAAACAACGCTGGAAAATGTCAGGGAATGCAGTACGAGCGGTCGGC
AAATTTAAGGGAAAGAAAAAGAAGTTGATGAATGTAACGTTAACGAATTA
TGAAGATGAAGAACTGAAAAGTGGGTTTTACACCAAAGATGTTGTCGAAC
AAGAAAATGAAGAGGAAGATGATTTCTTCACTAATATCATCAAAGCCAAA
AGACGTTTCTCCCTCAAGAGGTTCAGTTTGAAGAAACGGAATCCACGACA
AAGGAGTTATAGTGATTATGGTGGACAACGTGATCGGTTAATCGAGCAAA
CGAATGGGATAATTGAGGCACATAATGGCGCAGGTAAAGCGATTGAGGTT
CCTGAGGTTCCAAAGAGCCAGGAGAATTTGATCATTGAGAGTTTTATAAA
CGAATGTATGAGAGAAAGCATGCGGAAtcataaaaataataacaaaaaca
atCGAGAAAAAGAACGCCATCGCAGCGATCGCAGCAGTGCGGAGGAAAAT
AGAGATCAAGATGATGAACGTGACAATAAGAGTGGAACATATTCACCAGC
GACACAAAAAGAACGAAAACACGTCACTAGGAGTATTACGATGCCTAACA
ACGGATCACGTTATACGAAAGATTCAGCCGCGGACGACCGCCGCGAGACG
ATTCCGCGTGAAGCGAGGCGGAGTGAGGGGGAGGATCGTGTAGAGGAATC
ACGAAAGAAAACAAGGAGACCACGAAGTGATGTTGTAGGGATAACAGACA
TTGCCGAGAGACAGAAAAGAGCTTCTGAGCGCATGTCAAATTATTATGAG
AAAacaacaaatttgagtcaagaGGAACATCCATTCAGTAGACGAAACGG
TATCAAAAAACATTCACGTCAAGAAAACGGTTATGATTCGGAACACGGTA
GTACGTTGTCTGCATTCGCATTGGTACCCGGTACAGACTTACAACGAAAA
CTCTCGCAACACGGCATTAACGATAAAGCCTCTATAGACGTTATAACGAG
ACAAACTCGAACAAACGGGTCACAGAAAAGTAAACCGGACAGAAAATATC
CTCCACCGTCATCGTCAGCGAGGAACCCAAAACCAACTCATCATAGGCGT
TCCTTTCAAAGTGTAGACAATATATATGCATCTTCTTCAACCTCCTCCAT
ACATCAAAACAAGCGTTTCTCATCCTCACATATGACGAACAATCTCCAGA
ATTCTTTCAGTGCTGATGATATCGATGATACATCTTCACACGTGTTCAAA
CCTTTGAAAAGTGagattaaagatggcggcacATTGAACTTTATGGTAAC
TTCAACTCCAAGAGAAATAGTTGAAGATGTTCCAGAGGAACGTGAGGCTG
AAGAGGAAGAAGGATATGCAACTTAtgtttgaATGGAATTGTTCGAAGGC
AATCATTTTGAAATGATTTCGTCCATTATACgagtAGCGATAGAAGAACA
AGGCTTTGGAGAAGGGCTCACATCAAGCACTAAAGAAAGACTTCGTTTAT
CCTTATCTGGCACATCGAGCGATTCACAAATGTCAGGAACCAAACACGGT
AATGGAAACACCTCGCGTGAAGAGCGGAGAAAAAGTCGGAAGATCAAAAC
AACGCGATCAGTAGAAACACAGACAGAAGAAAACTCGTTTTGTCTTTGTT
TCATACCAGAGTACAAAGCACAGTTAGATGAAGAACAAGAACTGGACCCT
CGCATTCGTTTAATGTTAGATCAATTACACGTGCTTACTGAAGGGAAGGT
CACGTGTGTTGTccgaaattttgagaaaaaaccgAAATGGACTGCTAAAC
AACGCTGGAAAATGTCAGGGAATGCAGTACGAGCGGTCGGCAAATTTAAG
GGAAAGAAAAAGAAGTTGATGAATGTAACGTTAACGAATTATGAAGATGA
AGAACTGAAAAGTGGGTTTTACACCAAAGATGTTGTCGAACAAGAAAATG
AAGAGGAAGATGATTTCTTCACTAATATCATCAAAGCCAAAAGACGTTTC
TCCCTCAAGAGGTTCAGTTTGAAGAAACGGAATCCACGACAAAGGAGTTA
TAGTGATTATGGTGGACAACGTGATCGGTTAATCGAGCAAACGAATGGGA
TAATTGAGGCACATAATGGCGCAGGTAAAGCGATTGAGGTTCCTGAGGTT
CCAAAGAGCCAGGAGAATTTGATCATTGAGAGTTTTATAAACGAATGTAT
GAGAGAAAGCATGCGGAAtcataaaaataataacaaaaacaatCGAGAAA
AAGAACGCCATCGCAGCGATCGCAGCAGTGCGGAGGAAAATAGAGATCAA
GATGATGAACGTGACAATAAGAGTGGAACATATTCACCAGCGACACAAAA
AGAACGAAAACACGTCACTAGGAGTATTACGATGCCTAACAACGGATCAC
GTTATACGAAAGATTCAGCCGCGGACGACCGCCGCGAGACGATTCCGCGT
GAAGCGAGGCGGAGTGAGGGGGAGGATCGTGTAGAGGAATCACGAAAGAA
AACAAGGAGACCACGAAGTGATGTTGTAGGGATAACAGACATTGCCGAGA
GACAGAAAAGAGCTTCTGAGCGCATGTCAAATTATTATGAGAAAacaaca
aatttgagtcaagaGGAACATCCATTCAGTAGACGAAACGGTATCAAAAA
ACATTCACGTCAAGAAAACGGTTATGATTCGGAACACGGTAGTACGTTGT
CTGCATTCGCATTGGTACCCGGTACAGACTTACAACGAAAACTCTCGCAA
CACGGCATTAACGATAAAGCCTCTATAGACGTTATAACGAGACAAACTCG
AACAAACGGGTCACAGAAAAGTAAACCGGACAGAAAATATCCTCCACCGT
CATCGTCAGCGAGGAACCCAAAACCAACTCATCATAGGCGTTCCTTTCAA
AGTGTAGACAATATATATGCATCTTCTTCAACCTCCTCCATACATCAAAA
CAAGCGTTTCTCATCCTCACATATGACGAACAATCTCCAGAATTCTTTCA
GTGCTGATGATATCGATGATACATCTTCACACGTGTTCAAACCTTTGAAA
AGTGagattaaagatggcggcacATTGAACTTTATGGTAACTTCAACTCC
AAGAGAAATAGTTGAAGATGTTCCAGAGGAACGTGAGGCTGAAGAGGAAG
AAGGATATGCAACTTAtgtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034235XLOC_034235Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054279-proteinTCONS_00054279-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054279-exon-scaffold_242-1491911889:1566324..1566470TCONS_00054279-exon-scaffold_242-1491911889:1566324..1566470Clytia hemisphaericaexon
TCONS_00054279-exon-scaffold_242-1510915933:1566324..1566470TCONS_00054279-exon-scaffold_242-1510915933:1566324..1566470Clytia hemisphaericaexon
TCONS_00054279-exon-scaffold_242-1575043694:1566324..1566470TCONS_00054279-exon-scaffold_242-1575043694:1566324..1566470Clytia hemisphaericaexon
TCONS_00054279-exon-scaffold_242-1491911889:1568581..1568967TCONS_00054279-exon-scaffold_242-1491911889:1568581..1568967Clytia hemisphaericaexon
TCONS_00054279-exon-scaffold_242-1510915933:1568581..1568967TCONS_00054279-exon-scaffold_242-1510915933:1568581..1568967Clytia hemisphaericaexon
TCONS_00054279-exon-scaffold_242-1575043694:1568581..1568967TCONS_00054279-exon-scaffold_242-1575043694:1568581..1568967Clytia hemisphaericaexon
TCONS_00054279-exon-scaffold_242-1491911889:1570481..1572269TCONS_00054279-exon-scaffold_242-1491911889:1570481..1572269Clytia hemisphaericaexon
TCONS_00054279-exon-scaffold_242-1510915933:1570481..1572269TCONS_00054279-exon-scaffold_242-1510915933:1570481..1572269Clytia hemisphaericaexon
TCONS_00054279-exon-scaffold_242-1575043694:1570481..1572269TCONS_00054279-exon-scaffold_242-1575043694:1570481..1572269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1566324..1572269 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0327305 0.0950086 0.0341654 0.0905262 0.0357677 0.704883 1.12789 0.749531 0.77076 0.459073 0.510189 2.60963 2.37494 1.91878 0.377437 2.85669 1.62434 1.29397 5.30927 2.50501 1.62439 1.77444 2.43829 1.71223 3.28005 0.0578394 0.364398 0.0186269 0.0379553
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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