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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054280 ID=TCONS_00054280|Name=TCONS_00054280|organism=Clytia hemisphaerica|type=transcript|length=2343bp
GAGTGAACTGTTGTACTTTTAATATTGATTTTATGTATTAGCaattttga
ggacggtagagtggcTCAATTAAACCGCAAAATCTAGGACGGTTAAGAGT
GCTGATTTACCTTCGTTCTCAGTCAATCAGGACCGAGTTTCTGTATAGGA
GGACATCGAGagcgacggagtAGCGATAGAAGAACAAGGCTTTGGAGAAG
GGCTCACATCAAGCACTAAAGAAAGACTTCGTTTATCCTTATCTGGCACA
TCGAGCGATTCACAAATGTCAGGAACCAAACACGGTAATGGAAACACCTC
GCGTGAAGAGCGGAGAAAAAGTCGGAAGATCAAAACAACGCGATCAGTAG
AAACACAGACAGAAGAAAACTCGTTTTGTCTTTGTTTCATACCAGAGTAC
AAAGCACAGTTAGATGAAGAACAAGAACTGGACCCTCGCATTCGTTTAAT
GTTAGATCAATTACACGTGCTTACTGAAGGGAAGGTCACGTGTGTTGTcc
gaaattttgagaaaaaaccgAAATGGACTGCTAAACAACGCTGGAAAATG
TCAGGGAATGCAGTACGAGCGGTCGGCAAATTTAAGGGAAAGAAAAAGAA
GTTGATGAATGTAACGTTAACGAATTATGAAGATGAAGAACTGAAAAGTG
GGTTTTACACCAAAGATGTTGTCGAACAAGAAAATGAAGAGGAAGATGAT
TTCTTCACTAATATCATCAAAGCCAAAAGACGTTTCTCCCTCAAGAGGTT
CAGTTTGAAGAAACGGAATCCACGACAAAGGAGTTATAGTGATTATGGTG
GACAACGTGATCGGTTAATCGAGCAAACGAATGGGATAATTGAGGCACAT
AATGGCGCAGGTAAAGCGATTGAGGTTCCTGAGGTTCCAAAGAGCCAGGA
GAATTTGATCATTGAGAGTTTTATAAACGAATGTATGAGAGAAAGCATGC
GGAAtcataaaaataataacaaaaacaatCGAGAAAAAGAACGCCATCGC
AGCGATCGCAGCAGTGCGGAGGAAAATAGAGATCAAGATGATGAACGTGA
CAATAAGAGTGGAACATATTCACCAGCGACACAAAAAGAACGAAAACACG
TCACTAGGAGTATTACGATGCCTAACAACGGATCACGTTATACGAAAGAT
TCAGCCGCGGACGACCGCCGCGAGACGATTCCGCGTGAAGCGAGGCGGAG
TGAGGGGGAGGATCGTGTAGAGGAATCACGAAAGAAAACAAGGAGACCAC
GAAGTGATGTTGTAGGGATAACAGACATTGCCGAGAGACAGAAAAGAGCT
TCTGAGCGCATGTCAAATTATTATGAGAAAacaacaaatttgagtcaaga
GGAACATCCATTCAGTAGACGAAACGGTATCAAAAAACATTCACGTCAAG
AAAACGGTTATGATTCGGAACACGGTAGTACGTTGTCTGCATTCGCATTG
GTACCCGGTACAGACTTACAACGAAAACTCTCGCAACACGGCATTAACGA
TAAAGCCTCTATAGACGTTATAACGAGACAAACTCGAACAAACGGGTCAC
AGAAAAGTAAACCGGACAGAAAATATCCTCCACCGTCATCGTCAGCGAGG
AACCCAAAACCAACTCATCATAGGCGTTCCTTTCAAAGTGTAGACAATAT
ATATGCATCTTCTTCAACCTCCTCCATACATCAAAACAAGCGTTTCTCAT
CCTCACATATGACGAACAATCTCCAGAATTCTTTCAGTGCTGATGATATC
GATGATACATCTTCACACGTGTTCAAACCTTTGAAAAGTGagattaaaga
tggcggcacATTGAACTTTATGGTAACTTCAACTCCAAGAGAAATAGTTG
AAGATGTTCCAGAGGAACGTGAGGCTGAAGAGGAAGAAGGATATGCAACT
TAtgtttgaaaatggaaattgCTCTCAGCGACTTTCTTCTAACCAATGTT
CAACCCGTTGAACATGAAATGTCAATTCATCATTGAAGGTTCAATTTTGG
GACCCTCACCGGGACAGCGGaacttttttactaaaatttagcCTAGATAA
ATATTGAAGTTTTGCATCCCTTAGGGAAACTGAAACTATTTAAGTTGATA
TTTATTgacttatttttgctaaaaattggtTCACAGGTCAGACATTTGAA
AGACCATTTTATGAAGTTTCTCCTTGTTACAGCATTGTTAAATTGCGATG
CTTTTATGAGAAactaaattcataaattttaatGAGGATAGGAGTTTCAT
ACTACTTATAGCTATTTAGAAAATACATGTTCGAAATTTTGAAGCTCATT
ATCTCATTCAGAGACATTTTGGCaggtttttaaatttctaaag Run BLAST on NCBI transcript from alignment at scaffold_242:1567430..1572269+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054280 ID=TCONS_00054280|Name=TCONS_00054280|organism=Clytia hemisphaerica|type=transcript|length=4840bp|location=Sequence derived from alignment at scaffold_242:1567430..1572269+ (Clytia hemisphaerica)
GAGTGAACTGTTGTACTTTTAATATTGATTTTATGTATTAGCaattttga
ggacggtagagtggcTCAATTAAACCGCAAAATCTAGGACGGTTAAGAGT
GCTGATTTACCTTCGTTCTCAGTCAATCAGGACCGAGTTTCTGTATAGGA
GGACATCGAGagcgacggtaagtgaagtcgatgcaaaacaaagtcgatag
ttgatgtacggctggctctatatcgcctttacTGACcaaaacagacgacg
gtattttggtatttttaaccGTCTCTGAGTAAAGTGGACCGAAATTTTAG
GACATGTCAATTTTActttataccgtctccttcaatttatctcgaataca
tgaACTCGCTAGGATCTAGACAAATGAGAAGCTAACAGTCTCTGTTGCTG
AAAAACACAGatgcataaactcgctaatatgaATCATTTGGCTGTTTGAC
AATAATTAGCAGTGTCTAGAGTCAGCTGTTTATAAACAACCGCAAAAAAG
GATTCCATTTTGTACGGTAATGACTTCCTCAGAGTGGTAAAGAGGTTGGT
TTTGGTAGAAAAAATGTGTCGGTGTGATTTTCGTTCGGTGATTTATGACC
TTATTCTTCATAAGAACGTTTTTAAGGATAGTAAAATCGAGAACAGACTT
GTTAGATCCTAATGTAATGAAAAGATTATACGCAAATTTTGAAACGTTCC
GATTAGGCTTAGTGGAAAGCAAGAAACGACATCGTGTAGAAAGGTTATTC
GAAATTTAGTGTAGGACTTCTTCACTTCACTTCTGGAAAAcattatttct
taaaagaaaacttGATTTCTTAATTATGCTTTAAAGCTAGTTCAACGATC
AATATACTTATTTTTTGACATATAAACCTGCGTTACGCAGCAGGACAACA
ATTATTCGAAATAGACTTTTACATGATACGGAACATATACAATTTGGTGC
TTTGTACTGCATGTAGGAGTTAGATACTTTCTAGAACGTAGTTTGAAAGA
AGTTGTCCATAACTNTGATACGGAACATATACAATTTGGTGCTTTGTACT
GCATGTAGGAGTTAGATACTTTCTAGAACGTAGTTTGAAAGAAGTTGTCC
ATAACtgaatttcaaaagttattaataaaaacgaatggatttttttttca
ggagtAGCGATAGAAGAACAAGGCTTTGGAGAAGGGCTCACATCAAGCAC
TAAAGAAAGACTTCGTTTATCCTTATCTGGCACATCGAGCGATTCACAAA
TGTCAGGAACCAAACACGGTAATGGAAACACCTCGCGTGAAGAGCGGAGA
AAAAGTCGGAAGATCAAAACAACGCGATCAGTAGAAACACAGACAGAAGA
AAACTCGTTTTGTCTTTGTTTCATACCAGAGTACAAAGCACAGTTAGATG
AAGAACAAGAACTGGACCCTCGCATTCGTTTAATGTTAGATCAATTACAC
GTGCTTACTGAAGGGAAGGTCACGTGTGTTGTccgaaattttgagaaaaa
accgAAATGGACTGCTAAACAACGCTGGAAAATGTCAGGTAATTTTagat
cactgacctttatcataccctggaccaagcttcatCCTCCATGTTTGATA
GGAGCTTTTTCCCATGccatactcttgtctcccgtatatacggggggtcc
gaataagcaggggggtaggaaaattttctaaattctaataagcggggggg
atggaataagaggggggggtaGTTTAAAGACAGATTTTTTTCTAACtggt
atcaatttcaacaacaaaaaagaaactttaacaaataaacACGTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTttgtctcttaacaattag
cggggggacgtctattcgggagacaagagtagtgGGAGCACGACTCGATG
TGGGTCAATTtataattcaatgaaattttctgtttaaagattttttcacc
cacattgagtagtgctaccattagagTATCAATTTAAAAgaactctgatc
aaagattttgcttgggcCGGGATCTGCCGGGATCGAGAAattttgtccag
ggtatataaaggtcagtggtctaGATAACCAATCTATTCAAATTATCATA
AACTGGACAAATGATGGTTTCACTTCGAGGGAAAGTTTTTAGATGAAATA
TAAATTATTGATGAAGATAGGGTCTTTGCGGTTCGAACATTGATAatgac
tttaaataaaaaaacatcttttcTGCTATCAAAAATAAACTGAATGTGAC
TGCATTAAAACCTCTACCTACATTTTGGCAAAAGAACATCAACATCGCTT
GGGAGACTTTGGTACATGAATCTAGCAACTCCTCCCAACCTCCCAACATA
GCTTCTTTTGAAATGGACAACACGAAACCCACCCAAAATAAAGTTCTAAC
CCCAGGTACTAATTTTGCAGGATgcgaaagttttcgaaaatatgaaaaaa
tataatttagtGAAAACNACTAATTTTGCAGGATgcgaaagttttcgaaa
atatgaaaaaatataatttagtgaaaaccaattttcaagaaaaccaaaac
caagaacaattttataagaacgattttataagaacgtaaggctaaaaaat
ttgccaaaatctaagaacaatttaaaaccGCCCAAGTCTCAGACTCTAGA
GATTACTAAGAAAGTACAGGTTTTAAACCCATTTCAGactttaagtaaag
aaactaagcgtattaaGAACGTCGTAAGAACATTaaagcttgaaaatttc
aaaaaataagaacagcccagcctcgccaaaacttataaaaaattagCCTT
TGGAagggaaaaataagaatttttttgctCACCCCTAGGGAAATTGGATT
TCACTGGCCATAAGTGTAAGACGAAAGAAAAAGTCACAGTAATCCAAATT
TTCCTATTGTTTAAACAGGTTTAAAGAGTCTGATATTATTTGTAAGTTTC
CCTGGATTGAATTTGCTATGATTCGAAACTAATACCTTTTCTATTCAACA
GGGAATGCAGTACGAGCGGTCGGCAAATTTAAGGGAAAGAAAAAGAAGTT
GATGAATGTAACGTTAACGAATTATGAAGATGAAGAACTGAAAAGTGGGT
TTTACACCAAAGATGTTGTCGAACAAGAAAATGAAGAGGAAGATGATTTC
TTCACTAATATCATCAAAGCCAAAAGACGTTTCTCCCTCAAGAGGTTCAG
TTTGAAGAAACGGAATCCACGACAAAGGAGTTATAGTGATTATGGTGGAC
AACGTGATCGGTTAATCGAGCAAACGAATGGGATAATTGAGGCACATAAT
GGCGCAGGTAAAGCGATTGAGGTTCCTGAGGTTCCAAAGAGCCAGGAGAA
TTTGATCATTGAGAGTTTTATAAACGAATGTATGAGAGAAAGCATGCGGA
AtcataaaaataataacaaaaacaatCGAGAAAAAGAACGCCATCGCAGC
GATCGCAGCAGTGCGGAGGAAAATAGAGATCAAGATGATGAACGTGACAA
TAAGAGTGGAACATATTCACCAGCGACACAAAAAGAACGAAAACACGTCA
CTAGGAGTATTACGATGCCTAACAACGGATCACGTTATACGAAAGATTCA
GCCGCGGACGACCGCCGCGAGACGATTCCGCGTGAAGCGAGGCGGAGTGA
GGGGGAGGATCGTGTAGAGGAATCACGAAAGAAAACAAGGAGACCACGAA
GTGATGTTGTAGGGATAACAGACATTGCCGAGAGACAGAAAAGAGCTTCT
GAGCGCATGTCAAATTATTATGAGAAAacaacaaatttgagtcaagaGGA
ACATCCATTCAGTAGACGAAACGGTATCAAAAAACATTCACGTCAAGAAA
ACGGTTATGATTCGGAACACGGTAGTACGTTGTCTGCATTCGCATTGGTA
CCCGGTACAGACTTACAACGAAAACTCTCGCAACACGGCATTAACGATAA
AGCCTCTATAGACGTTATAACGAGACAAACTCGAACAAACGGGTCACAGA
AAAGTAAACCGGACAGAAAATATCCTCCACCGTCATCGTCAGCGAGGAAC
CCAAAACCAACTCATCATAGGCGTTCCTTTCAAAGTGTAGACAATATATA
TGCATCTTCTTCAACCTCCTCCATACATCAAAACAAGCGTTTCTCATCCT
CACATATGACGAACAATCTCCAGAATTCTTTCAGTGCTGATGATATCGAT
GATACATCTTCACACGTGTTCAAACCTTTGAAAAGTGagattaaagatgg
cggcacATTGAACTTTATGGTAACTTCAACTCCAAGAGAAATAGTTGAAG
ATGTTCCAGAGGAACGTGAGGCTGAAGAGGAAGAAGGATATGCAACTTAt
gtttgaaaatggaaattgCTCTCAGCGACTTTCTTCTAACCAATGTTCAA
CCCGTTGAACATGAAATGTCAATTCATCATTGAAGGTTCAATTTTGGGAC
CCTCACCGGGACAGCGGaacttttttactaaaatttagcCTAGATAAATA
TTGAAGTTTTGCATCCCTTAGGGAAACTGAAACTATTTAAGTTGATATTT
ATTgacttatttttgctaaaaattggtTCACAGGTCAGACATTTGAAAGA
CCATTTTATGAAGTTTCTCCTTGTTACAGCATTGTTAAATTGCGATGCTT
TTATGAGAAactaaattcataaattttaatGAGGATAGGAGTTTCATACT
ACTTATAGCTATTTAGAAAATACATGTTCGAAATTTTGAAGCTCATTATC
TCATTCAGAGACATTTTGGCaggtttttaaatttctaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054280-exon-scaffold_242-1491911889:1567430..1567596 | TCONS_00054280-exon-scaffold_242-1491911889:1567430..1567596 | Clytia hemisphaerica | exon |
| TCONS_00054280-exon-scaffold_242-1510915933:1567430..1567596 | TCONS_00054280-exon-scaffold_242-1510915933:1567430..1567596 | Clytia hemisphaerica | exon |
| TCONS_00054280-exon-scaffold_242-1575043694:1567430..1567596 | TCONS_00054280-exon-scaffold_242-1575043694:1567430..1567596 | Clytia hemisphaerica | exon |
| TCONS_00054280-exon-scaffold_242-1491911889:1568581..1568967 | TCONS_00054280-exon-scaffold_242-1491911889:1568581..1568967 | Clytia hemisphaerica | exon |
| TCONS_00054280-exon-scaffold_242-1510915933:1568581..1568967 | TCONS_00054280-exon-scaffold_242-1510915933:1568581..1568967 | Clytia hemisphaerica | exon |
| TCONS_00054280-exon-scaffold_242-1575043694:1568581..1568967 | TCONS_00054280-exon-scaffold_242-1575043694:1568581..1568967 | Clytia hemisphaerica | exon |
| TCONS_00054280-exon-scaffold_242-1491911889:1570481..1572269 | TCONS_00054280-exon-scaffold_242-1491911889:1570481..1572269 | Clytia hemisphaerica | exon |
| TCONS_00054280-exon-scaffold_242-1510915933:1570481..1572269 | TCONS_00054280-exon-scaffold_242-1510915933:1570481..1572269 | Clytia hemisphaerica | exon |
| TCONS_00054280-exon-scaffold_242-1575043694:1570481..1572269 | TCONS_00054280-exon-scaffold_242-1575043694:1570481..1572269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1567430..1572269 + |
Blast
The following BLAST results are available for this feature:
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