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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054285 ID=TCONS_00054285|Name=TCONS_00054285|organism=Clytia hemisphaerica|type=transcript|length=286bp
CAGTAACAAAGTTGATTCTTGGAATGGAAGAGCCATCAATCTCTTCAAAG
ATTGAAAATGAGACAATAGCAAACTCTGGATGGTCTTTGCCATCTGATGT
TGAAGATACACCATCAGTAATGATTTTGACAATTCCATTGACAACTTCGA
TGATCAAATCTTTGACTCCTTTGATGACAactttttggacattttccaaA
GCAGCAAGGATTTGAGGTTTGTATTGTTCGAtgattttttgtgttgttgC
TTTTACTGAATCGACCAAGCTGTTGGCTGCAGTTTT Run BLAST on NCBI transcript from alignment at scaffold_242:1606174..1608192+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054285 ID=TCONS_00054285|Name=TCONS_00054285|organism=Clytia hemisphaerica|type=transcript|length=2019bp|location=Sequence derived from alignment at scaffold_242:1606174..1608192+ (Clytia hemisphaerica)
CAGTAACAAAGTTGATTCTTGGAATGGAAGAGCCATCAATCTCTTCAAAG
ATTGAAAATGAGACAATAGCAAACTCTGGATGGTCTTTGCCATCTGATGT
TGAAGATACACCATCAGTAATGATTTTGACAATTCCATTGACAACTTCGA
TGATCAAATCTTTGACTCCTTTGATGACAactttttggacattttccaaA
GCAGCAAGGATTTGAGGTTTGTATTGTTCGATGATTTTTTGTGTTGTAGC
TTTTACTGAATCGACCAAGCTGTTGGCTGCAGCTTTCACCTTTTCCCATA
CTAAAGAGAAAATTGATAGAGATTTCTTTGAAAGGTTTTAAAGACTACTA
TAACGTTTTCTCATTGGGAAAGTTTTTTTGGCTCTTTAAAAACCGGAATT
ATTTGAGAAATATTAGACCCCGGATAGGATTTGTGTTTTTGTGAATAAAA
TATTATCTTACATTCAGAGAAAAAGAATTCAGCATCCATCAATTCAGAAT
CTTCTGAAAGAGCAGCAAGTTCTTTAACAATCTCATCCTCTTGAAGATCT
TCAACAACAATCTTGACAATATCTCCGATGATTTCAATAACGATTCTCTT
TCCCTCGTCAATGATCACTTTCTTGACTCTGGTCAAAGCATCTGTTACTT
TTGGTTTGTATTTCTCGATCAAAGCTCTGGTTTGGTTGCTAATCTTGTCT
CCAGCTTTTTCGAAAGCATCGGTGACTTTCTTCCATGCTGAAATTTGAAG
ATGAAATTAATATTatgattttgaaaaaggtaTTTGCAATTGatctattt
tgattattttctttattaCAGAGACTAACAGGAAAACAAGTTCGAATCGT
CAAAATAACTTACCATCGGTAACAAAATTGATTCTTGGAATGGAAGAGCT
ATCAATTTCTTCATAGATTGAAAATGAGACAACAGCAAACTCTGGGTGAT
CTTTGCCATCTGATGTTGAAGATACACCATCAGTAATGATTTTGACAATT
CCATTGACAACTTCGATGATCAAATCTTTTGCTCCTTTGATGACAacttt
ttggacattttccaaAGCAGCAAGGATTTGAGGTTTGTACTGTTCGAtga
ttttttgtgttgttgCTTTTACTGAGTCGATCAATCTGTTAGCTGCAGAT
TTCACCTTTTCCCATACTAAAGAGAAAATTGATAGAGATTTCTTTGAAAG
GTTTTCAAGACTACTATAATTTTTTCTCATTGGGAATGTTTTTTTGGCTC
TTTAAAATCGGAGTAATTCTAATAACTTTAGATCAAGAGAGCAGGATTTG
TGTTTTTGTGAATAAAATATTATCTTACATTCAGAGAAGAAGAATTCAGC
ATCCATCAATTCAGAATCTTCTGAAAGAGCAGCAAGCTCTCTAACAATCT
CATCCTCTTGAAGATCTTCAACAACAATCTTGACAATATCACCAATGATT
TCAATAACGATTCTCTTTCCCTCGTCAATGATCACTTTCTTGACTCTGGT
CAAAGCATCTGTTACTTTTGGTTTATATTTCTCGATCAAAGCTCTGGTTT
GGTTGCTAATCTTGTCTCCAGCTTTTTCGAAAGCATCAGTGACTTTCTTC
CATGCTGAAATTTGAAGATGAAATTAGTATTatgattttgaaaaaggtaT
TTGCAATTTatctattttgattattttctttattaCAGAGACTAACAGGA
AAACAAGTTTGAATCGTCAAAATAACTTACCATCGGTAACAAAATTGATT
CTTGGAATGGAAGAGCTATCAATTTCTTCATAGATTGAAAATGAGACAAC
AGCAAACTCTGGGTGATCTTTGCCATCTGATGTTGAAGATACACCATCAG
TAATGATTTTGACAATTCCATTGACAACTTCGATGATCAAATCTTTTGCT
CCTTTGATGATAACTTTCTGGACATTTTCCAAAGCAGCAAGTATTTGAGG
TTTGTATTGTTCGAtgattttttgtgttgttgCTTTTACTGAATCGACCA
AGCTGTTGGCTGCAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054285-exon-scaffold_242-1491911889:1606174..1606389 | TCONS_00054285-exon-scaffold_242-1491911889:1606174..1606389 | Clytia hemisphaerica | exon |
| TCONS_00054285-exon-scaffold_242-1510915933:1606174..1606389 | TCONS_00054285-exon-scaffold_242-1510915933:1606174..1606389 | Clytia hemisphaerica | exon |
| TCONS_00054285-exon-scaffold_242-1575043694:1606174..1606389 | TCONS_00054285-exon-scaffold_242-1575043694:1606174..1606389 | Clytia hemisphaerica | exon |
| TCONS_00054285-exon-scaffold_242-1491911889:1608123..1608192 | TCONS_00054285-exon-scaffold_242-1491911889:1608123..1608192 | Clytia hemisphaerica | exon |
| TCONS_00054285-exon-scaffold_242-1510915933:1608123..1608192 | TCONS_00054285-exon-scaffold_242-1510915933:1608123..1608192 | Clytia hemisphaerica | exon |
| TCONS_00054285-exon-scaffold_242-1575043694:1608123..1608192 | TCONS_00054285-exon-scaffold_242-1575043694:1608123..1608192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1606174..1608192 + |
Blast
The following BLAST results are available for this feature:
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