TCONS_00054290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054290
Unique NameTCONS_00054290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054290 ID=TCONS_00054290|Name=TCONS_00054290|organism=Clytia hemisphaerica|type=transcript|length=2945bp
ATGTACTTCAATTACAATTGGAATCAGAAAGCCCTTACACGTACAATGTC
GGAAGGGTGTAGTCGCGTGATGAACCATTCAACGACTGGTTTGGTGGCAT
CGAATCACAATGTGACCAGTGATATCGATTTTGGAATCGATAAAGACGTG
ACGTTAATCGAAGACAACCGCGAATACAACCCCGTTGTTTTTGACGTTTT
GAAAGTGTCAGCCGATGAAATCGCACAACAATTGACGTTAATCGATTTAC
CTTTGTTTCAACACGTTGAACCTGAGgaaTTGACGAGTTGTTCGTGGACG
TCCAAACGAAAACATGATAATTGTCCCAACATCGTCAAAGCTACCAAACG
ATTCAACCAGGTCAGTTATTGGGTGACACGTGAAATCCTGGATACAAACA
CAGCCAAGGGACGCGCAGAACGAATCGCTTACTTCATAAAAGTTGCTAAG
AAATTACAAGAATTGAATAATTTGAATTGTTTGAAAGCAGTAGTATCTGG
TCTGCAATGTACACCAATATATCGTCTAAACAAAACCTGGAATGTTGTAC
CAAAACGGGACAAAGAAAAGctagaaaaattaaatgaaCTTGTATGCGAA
GAAAATAACAGTTCCAAACTACGGCTTCACTTGCAAACGACAAAGTTACC
ATGTATACCTTACTTAGGAATGTATCTGACAGATTTGACGTATATCAACA
CTATACATCCTCCAACTGGTGGATTGGATGTAGAAAGGACCAATAAAATG
AATGAAATACTAAGGATCATAGCAGACTACCAACAATCTTTATATGATTT
CAAACCGATATATGCTGTACAAAACTATTTGAACTCCGTAAAATATATCG
ATGAGCTGCAAAAATTCATGGAAGATGAAAATTATAAATTATCATGTCAG
ATTGAACCAACGGAACTTCAAACGCGCGCTGAACGAAATGGAAGTACTGG
AAAACGGGAAACTGTCTCAGAATCGGATGACACGTATCGTTTGTATCCTA
AACAACCAGCCTCGAAGTCAAACAGTTTGAACCCCAGGAGGACTGGATCA
AGCATCAATCCTAAATCAGCCAGTCTGAATCTCCCAAGCACACCTTTCAA
TCAGCACCGTTCTCCTTCACCCAATAGAAAAGACTTTGTTCCTGGACATC
GCAAAGTCAAAAGTCTGGGGAGCACGCAAATCTTTCTCCAATCGATAAGT
GGAATGAATCCTAGTTCAACGTCAATATCATCAGGAAGTAACGTTTCAAC
TGGCTCTCGATATAATTTAGTGGACGATAgtatcttggaagataatttaa
ACACTGATATACGGTCGAGTACGTCTTACGATTCCGGACTAGATCATGAT
GAACCCGAAACTCATCCGATAATCCGATCGAACTATATAAGTGAGGATAC
GAAACcggaattttattttaaattacaAGGATTTTTAAAACGAAAGACAT
TAAAACGAAATGCGACTAGTCCGAAAGTAGCGAACTGGCAACGGTATTGG
GTTGGAATTACTTGTTCACATTTGGTATATTTTTTACCTAAGTACAGGGC
GTTTGGTGGTCATGATCGAAATAATTTTAAAGAAAACGCAGAGAAGATTC
TTCCGTTGTTTGGTTCCGACGTCTGTGAATGTAACGAAGAAGGAAGCTTC
CAACTGACGGACGAAAGCGGGGCCAACGTATACCGGTTCCGTGCGGGAAC
GAACCTCAATCGGAAACTATGGATGGATTTCATCAAAGAAGCTTCAAATG
GCGGCATGAAAGAACCGCCTCAAAATCTGATAACGTTTGACGATGATGAT
ACTCACTTATGACGTCAGTGGACTACTTTCTCTTTCTGAATGTTTTCCAA
CCGTCATCTTTCGGTTCCACTCTACAGTTATCTCCAGTCCACTTCCGCAG
ATGATTATCTTCAATCATGGATGTCGCTTAATCTCCCAATTCTGTTATGG
AATAACCAGTGAACTCCAACCAACTCATTATCCGTACACAAAATGATAGT
TCCTGGTTTGAGACTCTGGATTCTTTTTACATCGTCACcaattatgaaaa
taataataaatcaAACAACAAAATATTCGCTACTTAAAGCAGTGGACAAc
tgaagaatttttttggaatatttcttACATTCATTTCCAATACCATGAAA
ACTGCGACAAAGTGATTTCTAATAAAATACCTTGAAGTAAAGGTGGAATA
CAACCAAAGGGTGATGGATAACTGAAGAATTTTTTATTGATACttaatta
tattatatatttacTTTGAACATAGGAAAAAGTTAATAGAATCAAATTTT
TATAGAATATTGTCTAGAAAACAGAGAATACTACTATCAGTATGATATAT
ACGTGATATATACGCGAGCTTCAACGAGATGAATACTATTGACCAAGCTC
CCAGGGAGCTTCCTGATTTTTTCCTTTTCGCCCGGATTCTAATTTCAATT
GTTATGACATGGACATGGCGGATGAACTTAGggcgaaaatttaaaaagtt
ttgtgaAACCCTGTTAGTGATGAGATAAGATGATCccaaagagaattttt
tcattttttgtttcaagAAAGGAGAGAATACTGAACAGGTCTCTCAAAGg
atttactttaggcgtacaagctttcgcgagcagaaacttttgcgattttc
gtctttaaaaattcttggaagggccattcgcgaaagtttctgctcgcgaa
agtttgtataCCCAAAGAGTTTAATATCATTATGTATAGTGATTTATTAT
TTCGAAATGGGACTTTATATgaaatttctgtaaaatatcCGTCTTAGAGT
CCcgtagaaaatttatttttgtatataGGTCCTCTTTTGTCTCCTTGAGT
TCCCTTTTTTGGAAGAAGTTTGGGAGATGAAAGTTTATATTGTATAAAAG
ATGGAAAAAGTGTTCAAAATATAATGTTTATTGATGATAACTCAa
Run BLAST on NCBI

transcript from alignment at scaffold_242:1659301..1672472+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054290 ID=TCONS_00054290|Name=TCONS_00054290|organism=Clytia hemisphaerica|type=transcript|length=13172bp|location=Sequence derived from alignment at scaffold_242:1659301..1672472+ (Clytia hemisphaerica)
ATGTACTTCAATTACAATTGGAATCAGAAAGCCCTTACACGTACAATGTC
GGAAGGGGTAAGCAGGAATAAGTATTTTATGTATATGAAGCATCTTAAAG
ACTAAATGAACATCTACCAAAGCTGTTCAAAAACTTATTTTGAAGGGAGT
ACTTTTGGATGAGTTAGTTACTTCACACATTAGCGTAGCATCGCAGATTG
ATTAGGTTGtacagtcgactctctctaattcgaactcaaacggGAATCTG
ttttgttcgaattacggagagattcgaattatggaaattaTTTTACGAAC
AATTCTcttgaattacagaaagattcgaataaaagcTCACTGTATATCAA
ATGTGGTATTGTTTTGTCTGTTGGCCCTTTTACCTTTTTTCCAGCTTGAT
ATTTTTAAAGTCAGTATAGAGAAACATGTAACGCGGCTGATATTTCTCTC
GATTTTCTCCTGCAGAtatttttgtcatgtttttCGAAGGTAATAAGCTT
TACACTGTAATGACAAAGTGATGAGAAAATTTGACGATCAACTTATTTTG
ATTGTAACTCTgatgagaaaaaataatttcactgCTCTGTTATCAAAATT
CTGTATGGTTCGATTAACGAGCGGATGAGTATTTTTCTTGAGCATTTTGT
GTTTAGGTATTCTTGCTTTTTCTTCGCTATTTCATTTAACTTCAAGATTA
TATTAATGGTGTTGGTGTTGTCAACTCTGTGCTCTGGTTTGTGACAAAGA
TTTTACCACTCCTTGGTTAGACTGacagtgtttttattttctgtCAAAAA
TGATGTTTTAACGCCACAGGACCACCACCAAacataaatttttcaatttc
ctcATGCtaagaattttgttttgatcctttgtttttttgttttgaacgtg
TTTCCCGATTTTGCAGCAGGCTTCTAAATCACCTAGGTATAATTTACCAG
CTAGCTTACTTGCTCAACACTTTGTCACATTAATAAAAGTTCCGATTAAG
AGTTTTCAAAGtgaagtttaagtttaagtttaagcAATCATTTGCTTTAT
GATGCTGCTTCTAGCTAGATGAAACTCGGCTCTTTTGCCATGCCTTGACA
ATGCTTGTGAGTATTTCTGATTCGAGCATCAGGCTCGTCAACTAACCCAG
CTATTcgtgaaattttcttttatttagtcGATTCTTAGTTAAAGTCTCTA
CATACTCGCTCAGCCAGTTTTTAAATACAGACTTCTGTactaaaactttt
ttcttactGAAAGTGTAATCGCGTGATGAATCATCCAACAACTGATTTGG
TGGCCTCGTTTATCCAGTCTTTAAATACAGACTTTTGTACtaaaactttt
ttcgttttctttacAGTGCAGTCGTGCGATGGGTATGGTTGGCCTCGGTT
AGCCAGTCTTTAAATACAGACTTTAGTActaaaacttttcttctttcttc
tttacaGTGTAGTCGCGTGATGAACCATTCAACGACTGGTTTGGTGGCAT
CGAATCACAATGTGACCAGTGATATCGATTTTGGAATCGTAAGTCTAATT
TTTGCGGCAAATTGAAATCGTACAGGAGGAAGTTTGACCCGGATCACGGA
AATAGATGATTTTGGGGAATATAGTGGGGCGGAAGGGTGTGATGCCTTAA
ATTCAAGAAAAGTTAAGTCTTGAATGAGGGACTGGTCTATTGATTTCTTT
TccaataaattaaattgaaaacttTTGGAATTTTAAAAAGAGACATTTTG
ATTGAAGTATTTATTTGTTCGTCTTCTGAGATCACTTTCCGTCAAACCTT
TAAATGTTCCAGGCGGCTGTCTTTGAAACTCAAACACATAAACGAGTGTC
GTTCGTActtatttggaatttttttcactatTTCGTCATCAGGTCATCAT
AACATCGATCAAAATTTCAACACTTGATCTAAATAATTTTCGTTAACTCT
TGTGAGAAAGCTTTCATCTGTTAAAGTGATCAAGTTGTCACGTTTGAGAG
TATGATTTTGTATTTTCACAAGACCTAGTCCCTGAACGGTCTCCTGACTT
CCTGGATATACAACCTATTAACTTTGAATTCGTTTTTCAAATAGTACAGT
GGATCTATTGCCCAAACATAGCACTGACTTTATTTAAAAAGGGCCTTTGC
CAACAGCCTTGGTCTCTGCTAacctaaaaactcaaaaaagaaaccatttt
atgattttcccAACACATTTTTTACAGGATAAAGACGTGACGTTAATCGA
AGACAACCGCGAATACAACCCCGTTGTTTTTGACGTTTTGAAAGTGTCAG
CCGATGAAATCGCAGTAAGAATGATTCGCATTTTTCTCTTAACCCTAtaa
gccccaagcttttttgacttttgtatccccagggggggggggNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggtagaatctaccac
cctcgattattttcgatctagaagagctatggccatgaaatttggtacag
atgttctctatcatgatacaattttccaggaagaaaaaaaaaattgatga
cgtcattcaaaaactgatgacgtcatcacaaaatttccacctgtcggaaa
aaagcctaaatatatggtttacaaatatgtctattacagtcgaaccaata
aagatatttcaattctgtttaaagattctgaaaggtaaaagactgttctt
taacataattgccggtttcacaatttccatgaagagtttttcttaaaatc
taatgCTGacgatgagtaaaattttcagaatttgatgacgtcataaatga
tgacgtcatcattttcaaaaattttcttttgattttttaaatttgtatta
tcaatgcctatcacgtgtaaaaatttgaaaatgattgaataaatagttta
gaagttaNNNNNNNNNNNNgattttagctgggttttatgtcatgtttcac
aataaagtcataaaacctgatctggacaacctatgaccctaaaattttgc
acaagtactccTAATAAGATTTTATTAAAagtcagaaagtttcaagtcgt
ttaaaaaatttttctccgagatataaacaaaagaactccagcgtggtaga
ttctaccccccctggggctaatagggttaatgaAGTATTGGAAACTGTCT
TTTTTTCAACATAAGGCATAAAGAGATACTCAGCTCTATACGTGAAGGGC
CTATATGTATGCTCATTTTTCTGGAAGATGCAAATTGAATATAATTTTCA
AGGCCAAAATTAATGAATTTCATCTNAGGCATAAAGAGATATTCAGCTCT
ATGCGTGAAGGGCCTATATGTATGCTCATTTTTCTGGAAGATGCAAATTG
AATATAATTTTCAAGGCCAAAATTAATGAATTTCATCTCTCAGAATTCTT
ATGGAATCTGCATTTAATTGCTTTTGCTTGTTAAGGACCCCTAATGTTTT
ATGGGTATTACTTTTCGCTAAAGGTTATGACATTTTTCTAGAACCCTTGT
TAAAGAGTCACGATATATTGCCAACCTCCGCAGAGAAAATTGATTAAACC
GAATTGCATTTTTGTTTCAGttgttctttttcatcaaagtaGAGATTAGG
ACCCGTTTCATAATTGAAACATTCCCACCACTAAGAAGCATACTGAATTG
GTTGCTTATTAAAAGATTGTTAACACTCGTTATTTAACAAGGCTTACTTA
GAGTCTAATTAAATCTTCAAATCAAACTCTAACCATGTATCTAATTGAGA
ATTTactatttaaatattttaaattgtgATCTCTTAAGATCGTTTGCAag
aaattacacgcttttttttaagaatacactttataagaatgtccatgatg
aaaatggccaaaaaaataagaatatgctaagaatatcaccatcatggaat
tttgctattcaagcaaagaatgtcatttttagagcattctaaattataaa
ttgccaattaccccaaAGTAATAAggatgctgtaagaatattttaggatg
attttcccaaaaaagttaagaataaccatgatgaaatggatttacaccat
tcttataaaaaaaaaagcgtgtaaatggGAGTTTATTAGATTTTAAAACT
CGAGAGCTTTACGATTTTCCAAAATTGAtaaagaatttctcaaatttgAG
CTTGTGCAATTCTATCGAACAACCAACAATGGATGAATCTTCTCTTTTTG
TCTTTCCAGCAACAATTGACGTTAATCGATTTACCTTTGTTTCAACACGT
TGAACCTGAGGTATAAACTGTTCTTCTCTCCCGATTATCATTCATCATTT
CGGACGCTTGTTGAATCTCGGACAACAAAGATCCATCATGAATAAATATA
GTCATATAAAAAACGattacttttttgttttatatttcaCTAATTCAtca
gaaaaactttgaaaaagttaacattttgagattttaattCTACTCATAAA
AATTATTATACACTTTGGGAAATGCTACTCATTTTTTTCGAcatttcatt
ttgaaggaaTTGACGAGTTGTTCGTGGACGTCCAAACGAAAACATGATAA
TTGTCCCAACATCGTCAAAGCTACCAAACGATTCAACCAGGTACTTAAAG
TGATTTCTTTTGTATACATAGTTTATGAGCGCCTGTGTGTTTTTGATACT
GTTTCTTAGTAATTTCATTACCAATCTCCTCAAAAGCTTACCGCGCCTAT
AAAGGTTGATGGGTGTATTGGGGCTGTACCCatagatctgtaaagcccga
atggctagatttgcggcttttatcgaaaagtgaagcctaggtttggaagg
atttcctaccaaagtcacgtgactaaaatatgcagtTTCACCGGTTTGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTACtctttt
tgatctcgcgctccgaaaacaattaaaatgctagatcctatccatcggca
cgaaatttaaaaagtcaaatttttgctttacttttttttgctggagaaag
cttaaagttgcctatctagcctttcgggctttacagatatctgtggctGT
ACTAGTACCAGTACCATACATCTTTCTTTACTAATTCATTACTTTGACGA
ATcacacttttttgttttttatgatGTTAATTTTTAGGTCAGTTATTGGG
TGACACGTGAAATCCTGGATACAAACACAGCCAAGGGACGCGCAGAACGA
ATCGCTTACTTCATAAAAGTTGCTAAGGTAAGACCCTCGATTATGTCTGT
CCAAAATAGGAGAGATTCTCGTCTTTTTGTTTGGGTCAAGAATTCGCTTC
CACAATTCGTCTTGTTCTGTTTGGTGGCATCTTTGAAATTCTCTTCCTTT
TGATCAATTTGACTCATTTGAAACTGCTAACACGCAAATTAAGGACTAAT
AAATAAGGTTGAGGGGTAGAATCTCCTCATTACATGGTACTTGAGGTATT
CAAGATAGTCTTTTAAAATTTGTAATTCTGCCGCAGCGAATTTTGCAAGT
TTGTTttgacgtcataaaaaatacTTGTAAACTGAATCATTTCGTTTTAT
TCTTTTAGAAATTACAAGAATTGAATAATTTGAATTGTTTGAAAGCAGTA
GTATCTGGTCTGCAATGTACACCAATATATCGTCTAAACAAAACCTGGAA
TGTGAGTTCATGTATTTTTAACCTCGGAGTAATGATCACATTATTAGTTT
ACTTAATCTGATGTCATTACTTTTGGCATTCTTCATAATatgtatatata
attttttgcaTTCTTTCCGTGCCTTTAATGCTTCAATTACGCTTTCCTTC
AGAAGAAAACTCTATTTCTCTAGTTCCAATTCCCTCAGAGTTCTTACTCT
TTAGTCAAGGCCTCTCCTTGCCTATGACTGTAAATACCAAAGTGTGTCGT
GGTTTCGAACTAATCTTATCTTGATTGAatagtcaaaattcagtatctTC
AAATAGCGTGTCACACATCCCTTTAAATAACGCGAAAAACCGTAATCTTA
TCTTTCCTGGAGAGCCCGCCTTCCTTTTACCCCTTGACGTTTTTACATTG
ATTTTGCAAGATACAGTATGTAATACACTCACTATAGAGAAATAAcagta
ttttcttgttttgttaTTCGCGACATACTGTAATAGCTTCAAAACATGAT
CACCCGAGAAAAATGTGGTGACTCATTAGTATGGAATTTTGATTTCTGAA
TCTGTAAAAGATACCTGAGCTTTGAGTGATTTTATCTGAGACTTTAGATT
TATCATCTTTTTCCTCATCTTTAGGTTGTACCAAAACGGGACAAAGAAAA
GctagaaaaattaaatgaaCTTGTATGCGAAGAAAATAACAGGTAAATCA
CGTTAAACCATACATAAAGCCCTTTCCCTTCTTTTGCGGGCTTTCTATCT
GATGGCTATCGATTTACAACTAATCGATTCAAGGCTCGtcaagaaaatta
ttcttggcTCTCGATTAAACGGTTACAGCTTGATTTCGATATTTTAATCT
TCCATCAGGAATTTCAATGTTCATCTTTACTAGTAGTTTCACCGCATGCT
ATTGAGGGATGAGATCTTTCTATGTCCTTCATTGCTCAATTACTGTAATT
TCCAAATGCTTTTAAAATGACATGTAATTTAGCATCCTAAATTGTCTTTT
TGGCATCATGAAACAAAACCTTGTTTTATCGCAATCAAAGCTACATTAGA
ACATAATTACAAGTTCATTTTCGACCACTAAAGCATGGTTTTGTGATTAA
TTACCAGCCCTTTTATCTCATGACACGCTCTAACGGAAATGAAGATTCCA
TTGGATTTCATTAGACATGTGTTGTTAATTGCTGTCATGTGATCTGATTT
TCCCACGGGAATTTAAGCGTTTCCGTAATTCAATGGTTTCTCCGATATCT
GCTGACTTTAAAAAAGAACCATCTAAAAATTAATCTCAAGCAAAGAAGAA
ATTTCATATTTGGATTTAAAACAGtttgaattttgtttgaaaagcgCTAC
GCCTTTTGTATGACTGGGTGGCCGCCCTCCGAGTCTACTTTGCCCCTAGC
CAAGTGAGTTCCCTGCTCAAGAAGACTCTGTAACTGAAAGCTGAGTGGAT
AAAATATATTTGTAGTTGAatctttgaatatctttacaacgaTAACACCT
TTCTTTGGTCTTTTTCTATTGCAGTTCCAAACTACGGCTTCACTTGCAAA
CGACAAAGTTACCATGTATACCTTACTTAGGTTTGTACTTCattctaatt
tgttcgaattacagagagattcaaatcatagaaagtattttatactgttt
tctccttgacggggataAAGAACACAATCGggttatagaaagattcgaat
aataataACTCGAATTATAGAGATTCTACGTTCAATTTTACGTTGAAGTT
TTtaagttttacttttttcaagttGTTGttggttgtttttgtttttttga
aagttaatAAATGTGAAAAGAATCGTGATTTATTTGCAGGAATGTATCTG
ACAGATTTGACGTATATCAACACTATACATCCTCCAACTGGTGGATTGGA
TGTAGAAAGGACCAATAAAGTACGTATTATTGGTCCTCGTAATTTAATGC
TAATATGCACGGTATTAGTGTAAATATCCTCTCAATTACATTGTGCTACT
AGTTGCAAATAGCTTTTTTTAACAATATATACCTGCTCTGCCAGAAAAAT
CTGtgatatagttggacagaaaattcttatttctttgcATATATactcaa
aagaatatttttgaaaattaaataatgtcaattttaaccattttgcAGAT
GAATGAAATACTAAGGATCATAGCAGACTACCAACAATCTTTATATGGTA
AGTTCATTCAAAATGTATATTCAGCCTTTAGCTTTTGCCGATGGTACAAA
TATTTCACAGATTGTGTTGTTACATTTTCTTCTAGTATCGCTTCAttcgt
tttctttataagaacatccaaaatttttgaagcctccgaatgttcttaac
tttttgagtttcctGAACATgttaacatgctcttatttatgccatttttt
gagtatttttttccattttcctaagaaatttggtgCTTTTGAGTCCGCAG
AGGCTTAAaataattgttcttatatagtttgttcttataaaaaaacgggT
ACTCGATCATAAGGAAATGAGCTACTCAAATTTCCCTTCCCACAAAACCT
TTCACATCCCGAGACATCCTTATCTTCTTCTACATCGTAGATGGCTTAAC
AGCTCGTGAAGGATTTTCTTGAAGTATAACGTATAAGTGGTTTATAGAAA
CTTTATCTAtcgtcaaaattttttattaagcAGATCAATGACCACTTTAT
AACGAATCCTCATCATTTAGCAGATGATATCTAAACATTTTGAATGATTA
GATTTCATAATCTACTTCTTGTGATTGTACTAGTAAATCGTCTCTCTTTT
CTATTCTTGATAGCAAACTGATAGAAAGCCCTGTGTTAGTTTAATAGCTC
GAGGGGTAAAGAATCCTACATttactaaaaattaaaaatatataaaaaca
atgacaaatttcataaagatcGACAAATTTCACTGTCCACAACTCTGACC
CATCctattcctctttgtttatcacgcaGATTAACTACATATGATtcaaa
gaacgacaaattacgcatgcgtgttataatgcaggattctttagaggaac
atACTGTCTGGACTGTAATGGCTTTTAAACTTTTATTCCTGGTCAGTTAT
CCaatccaaaatgaaaaatatgctAGCGAGTCTggatgtaaattttttta
attttatttcctGTAGATTTCAAACCGATATATGCTGTACAAAACTATTT
GAACTCCGTAAAATATATCGATGAGCTGCAAAAATTCATGGAAGATGAAA
ATTATAAGTAAGTTGTGCCATATATTAATATGAGAAAAGAATCTTACGTT
TAAGTTATATAGGCTTGATTATGTAATCTTTGTTTGAGTGTTCATCGTTT
GTAAGCACTTTAAATTTTACCTTTAATGACAGAAACACCTACTTTTAAGG
CCAGGTTAACGATATTGAGATCTAAATCGCTATGAAAAAAATGCTGAACT
TGCACAAACACTGCAATGTTTAAcaataaataatcaaaaaaCCAAATAAC
ACACGTTAGGCCCTTGGTTGTTCAATATGACAATTATAGAATGtcttctt
tttataattttattatgCTTTTCATTGCTTTTTCAAGATCCTAAATCTAT
CTCCGTTACAGTAAtcctttttcattgtttttctcTTTACTTCAGATTAT
CATGTCAGATTGAACCAACGGAACTTCAAACGCGCGCTGAACGAAATGGA
AGTACTGGAAAACGGGAAACTGTCTCAGGTAATGTGTGATTTGCTCTCTA
CCAATCGCACCTACTCCCAAAATTCTAGATTTTATTTCATAGCTATTTAG
GTTACAAGTTTTTCATGCAGAAACTCTTTCGTTTTCTCATTGGAATTCGC
TAACTAGAATATCAGATCACTGTGTTGGTCGAAACTGCGggctattccaa
atcgctttagtCACTCTGCTGCCCTACTTAATCATGCGCAAAAAAACTAG
ATGTTTACATTAATCCTTCTGTAGATCACCATTACTCATCATTTTCTGAA
TCTCTCTCACAGAATCGGATGACACGTATCGTTTGTATCCTAAACAACCA
GCCTCGAAGTCAAACAGTTTGAACCCCAGGAGGACTGGATCAAGCATCAA
TCCTAAATCAGCCAGTCTGAATCTCCCAAGCACACCTTTCAATCAGCACC
GTTCTCCTTCACCCAATAGAAAAGACTTTGTTCCTGGACATCGCAAAGTC
AAAAGTCTGGGGAGCACGTAAGTTTACTTCTTATCTGTaaacagacccga
tatctacggataatttcaaaattcattcatGTACTACGCTACGTCATACG
TGAGATATACTCTGATACAGAATAGTTCACTTCCTGagctcaaaattttg
aaacagaAACTTTGCAAGATATCTATCCACCTTTTTTCCTTGCTTGCATT
TTCCGACATTGCTTGGTGAAACTTTAAAAGTAACTTTTATTTCGCTTTTA
GGCAAATCTTTCTCCAATCGATAAGTGGAATGAATCCTAGTTCGTAAGTA
TTTTATTCAATTCTCAGtctctcaaaatattttgtagTCTAAGTCTATTT
TAGTGACATTATCCCTAACTAACTGAAAGTTATTTATGGGGCTTCTCAAG
TAGCCTAACCCTATTCCAATATTATCATACTTAAGGCTTAAAAAAGAGAT
GACACGTGTACTTTCCATTCAATTAGGCGCGATGAGATTTAATACAGTta
tagttgactctctctaattcgactttcAAGGGATAGagatttttcttcga
attagagaaagattcggatCTTTGATGGATCTTTTTAAACCAGTTTCTAG
TTGAAGGGATCAATGTTTTAGCTCGAATAACAGAATAATTGTggttcgaa
ttagggagagttGACTGAATGTTTCGAATCCTGAAATCTGATTCTTTTTA
CTACAGAACGTCAATATCATCAGGAAGTAACGTTTCAACTGGCTCTCGAT
ATAATTTAGTGGACGATAgtatcttggaagataatttaaACACTGATATA
CGGTCGAGTACGTCTTACGATTCCGGACTAGATCATGATGAACCCGAAAC
TCATCCGATAATCCGATCGAACTATATAAGTGAGGATACGAAACcggaat
tttattttaaattacaAGGATTTTTAAAACGAAAGACATTAAAACGAAAT
GCGACTAGTCCGAAAGTAGCGAACTGGCAACGGTATTGGGTTGGAATTAC
TTGTTCACATTTGGTATATTTTTTACCTAAGTACAGGGCGTTTGGTGGTC
ATGATCGAAATAATGTAAGTTCATGttttattaatttcaaaatcataTCC
ACCAACTTTCTTTGCAGGTAGTTAcaatatttttgactttttaaaccGGA
ATCAATGAAATGGGAACCATCCCTCagtttgattttgaagaaataGACTA
CGTTAAATTACGTTACGAGCAACGCTTCcctcattttcaaaataattgtt
atagtaattgattcccagaggagttcaTTAGAACTTTACTCTATTCAAAA
AGTAACACTTGAAGACTCGAGGGTATCTCCAtggcaatggtttcaaaacg
aggcatctcattgcactcaaaataatttctattATAATATGGCCTATTCT
CAGAAtgctaatttatttttttcaattttcaattttcctatTGTAGTTTA
AAGAAAACGCAGAGAAGATTCTTCCGTTGTTTGGTTCCGACGTCTGTGAA
TGTAACGAAGAAGGAAGCTTCCAACTGACGGACGAAAGCGGGGCCAACGT
ATACCGGTTCCGTGCGGGAACGAACCTCAATCGGAAACTATGGATGGATT
TCATCAAAGAAGCTTCAAATGGCGGCATGAAAGAACCGGTAAGCTCTTGA
GATGGGTTGaggtttcaaaatttcctattttGGTCTCATAAGTTATTTTT
CaaacggaaacacccgaaaaaaacCTGTTACTAAAAACAGAAACAGGGTA
GTCAAAatccgttttttttttctttaggtGTTTCCGTTAGGATATATGAT
GTTATCTTGGCTTGCGCATATCAAGAATCCCCTCGTTTTTAAACAACATT
ACCAAATTTAATACATAGTGGACTCAACCGTCAAATCGAGTCAGATCTTT
AAATTATGAAGTAATTAATTCGACCAATGGGTACTTGATTTCGATGTTGA
GCGAACTCTTGGACAAATAGTCGTAAATAAGGTACTTATGGACTTTGTAC
GTCGCTGTATAttaaactcaatttttttttctttttgctttcagCCTCAA
AATCTGATAACGTTTGACGATGATGATACTCACTTATGACGTCAGTGGAC
TACTTTCTCTTTCTGAATGTTTTCCAACCGTCATCTTTCGGTTCCACTCT
ACAGTTATCTCCAGTCCACTTCCGCAGATGATTATCTTCAATCATGGATG
TCGCTTAATCTCCCAATTCTGTTATGGAATAACCAGTGAACTCCAACCAA
CTCATTATCCGTACACAAAATGATAGTTCCTGGTTTGAGACTCTGGATTC
TTTTTACATCGTCACcaattatgaaaataataataaatcaAACAACAAAA
TATTCGCTACTTAAAGCAGTGGACAActgaagaatttttttggaatattt
cttACATTCATTTCCAATACCATGAAAACTGCGACAAAGTGATTTCTAAT
AAAATACCTTGAAGTAAAGGTGGAATACAACCAAAGGGTGATGGATAACT
GAAGAATTTTTTATTGATACttaattatattatatatttacTTTGAACAT
AGGAAAAAGTTAATAGAATCAAATTTTTATAGAATATTGTCTAGAAAACA
GAGAATACTACTATCAGTATGATATATACGTGATATATACGCGAGCTTCA
ACGAGATGAATACTATTGACCAAGCTCCCAGGGAGCTTCCTGATTTTTTC
CTTTTCGCCCGGATTCTAATTTCAATTGTTATGACATGGACATGGCGGAT
GAACTTAGggcgaaaatttaaaaagttttgtgaAACCCTGTTAGTGATGA
GATAAGATGATCccaaagagaattttttcattttttgtttcaagAAAGGA
GAGAATACTGAACAGGTCTCTCAAAGgatttactttaggcgtacaagctt
tcgcgagcagaaacttttgcgattttcgtctttaaaaattcttggaaggg
ccattcgcgaaagtttctgctcgcgaaagtttgtataCCCAAAGAGTTTA
ATATCATTATGTATAGTGATTTATTATTTCGAAATGGGACTTTATATgaa
atttctgtaaaatatcCGTCTTAGAGTCCcgtagaaaatttatttttgta
tataGGTCCTCTTTTGTCTCCTTGAGTTCCCTTTTTTGGAAGAAGTTTGG
GAGATGAAAGTTTATATTGTATAAAAGATGGAAAAAGTGTTCAAAATATA
ATGTTTATTGATGATAACTCAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034238XLOC_034238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054290-exon-scaffold_242-1491911889:1659301..1659357TCONS_00054290-exon-scaffold_242-1491911889:1659301..1659357Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1659301..1659357TCONS_00054290-exon-scaffold_242-1510915933:1659301..1659357Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1659301..1659357TCONS_00054290-exon-scaffold_242-1575043694:1659301..1659357Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1660758..1660838TCONS_00054290-exon-scaffold_242-1491911889:1660758..1660838Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1660758..1660838TCONS_00054290-exon-scaffold_242-1510915933:1660758..1660838Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1660758..1660838TCONS_00054290-exon-scaffold_242-1575043694:1660758..1660838Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1661528..1661614TCONS_00054290-exon-scaffold_242-1491911889:1661528..1661614Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1661528..1661614TCONS_00054290-exon-scaffold_242-1510915933:1661528..1661614Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1661528..1661614TCONS_00054290-exon-scaffold_242-1575043694:1661528..1661614Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1663560..1663610TCONS_00054290-exon-scaffold_242-1491911889:1663560..1663610Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1663560..1663610TCONS_00054290-exon-scaffold_242-1510915933:1663560..1663610Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1663560..1663610TCONS_00054290-exon-scaffold_242-1575043694:1663560..1663610Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1663857..1663940TCONS_00054290-exon-scaffold_242-1491911889:1663857..1663940Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1663857..1663940TCONS_00054290-exon-scaffold_242-1510915933:1663857..1663940Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1663857..1663940TCONS_00054290-exon-scaffold_242-1575043694:1663857..1663940Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1664538..1664627TCONS_00054290-exon-scaffold_242-1491911889:1664538..1664627Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1664538..1664627TCONS_00054290-exon-scaffold_242-1510915933:1664538..1664627Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1664538..1664627TCONS_00054290-exon-scaffold_242-1575043694:1664538..1664627Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1664959..1665051TCONS_00054290-exon-scaffold_242-1491911889:1664959..1665051Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1664959..1665051TCONS_00054290-exon-scaffold_242-1510915933:1664959..1665051Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1664959..1665051TCONS_00054290-exon-scaffold_242-1575043694:1664959..1665051Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1665675..1665742TCONS_00054290-exon-scaffold_242-1491911889:1665675..1665742Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1665675..1665742TCONS_00054290-exon-scaffold_242-1510915933:1665675..1665742Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1665675..1665742TCONS_00054290-exon-scaffold_242-1575043694:1665675..1665742Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1666575..1666630TCONS_00054290-exon-scaffold_242-1491911889:1666575..1666630Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1666575..1666630TCONS_00054290-exon-scaffold_242-1510915933:1666575..1666630Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1666575..1666630TCONS_00054290-exon-scaffold_242-1575043694:1666575..1666630Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1666890..1666969TCONS_00054290-exon-scaffold_242-1491911889:1666890..1666969Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1666890..1666969TCONS_00054290-exon-scaffold_242-1510915933:1666890..1666969Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1666890..1666969TCONS_00054290-exon-scaffold_242-1575043694:1666890..1666969Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1667199..1667247TCONS_00054290-exon-scaffold_242-1491911889:1667199..1667247Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1667199..1667247TCONS_00054290-exon-scaffold_242-1510915933:1667199..1667247Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1667199..1667247TCONS_00054290-exon-scaffold_242-1575043694:1667199..1667247Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1668217..1668307TCONS_00054290-exon-scaffold_242-1491911889:1668217..1668307Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1668217..1668307TCONS_00054290-exon-scaffold_242-1510915933:1668217..1668307Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1668217..1668307TCONS_00054290-exon-scaffold_242-1575043694:1668217..1668307Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1668696..1668778TCONS_00054290-exon-scaffold_242-1491911889:1668696..1668778Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1668696..1668778TCONS_00054290-exon-scaffold_242-1510915933:1668696..1668778Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1668696..1668778TCONS_00054290-exon-scaffold_242-1575043694:1668696..1668778Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1669063..1669267TCONS_00054290-exon-scaffold_242-1491911889:1669063..1669267Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1669063..1669267TCONS_00054290-exon-scaffold_242-1510915933:1669063..1669267Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1669063..1669267TCONS_00054290-exon-scaffold_242-1575043694:1669063..1669267Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1669502..1669543TCONS_00054290-exon-scaffold_242-1491911889:1669502..1669543Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1669502..1669543TCONS_00054290-exon-scaffold_242-1510915933:1669502..1669543Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1669502..1669543TCONS_00054290-exon-scaffold_242-1575043694:1669502..1669543Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1669957..1670314TCONS_00054290-exon-scaffold_242-1491911889:1669957..1670314Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1669957..1670314TCONS_00054290-exon-scaffold_242-1510915933:1669957..1670314Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1669957..1670314TCONS_00054290-exon-scaffold_242-1575043694:1669957..1670314Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1670697..1670888TCONS_00054290-exon-scaffold_242-1491911889:1670697..1670888Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1670697..1670888TCONS_00054290-exon-scaffold_242-1510915933:1670697..1670888Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1670697..1670888TCONS_00054290-exon-scaffold_242-1575043694:1670697..1670888Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1491911889:1671295..1672472TCONS_00054290-exon-scaffold_242-1491911889:1671295..1672472Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1510915933:1671295..1672472TCONS_00054290-exon-scaffold_242-1510915933:1671295..1672472Clytia hemisphaericaexon
TCONS_00054290-exon-scaffold_242-1575043694:1671295..1672472TCONS_00054290-exon-scaffold_242-1575043694:1671295..1672472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1659301..1672472 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.509677	4.49501e-06	6.09188e-07	0.0249244	0.00269136	2.83113	0.928284	0.00437434	0.217392	1.67705	2.94086	7.66107	8.4816	4.98574	2.71382	4.41071	5.89647	1.05842	1.9846	6.31511	6.46863	4.70482	0.00436296	0.767857	0.00446106	7.52986	12.7737	0.00198495	1.90708e-08
Blast
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BLAST of TCONS_00054290 vs. Swiss-Prot (Human)
Match: RGPS2 (Ras-specific guanine nucleotide-releasing factor RalGPS2 OS=Homo sapiens GN=RALGPS2 PE=1 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.857e-103
Identity = 214/583 (36.71%), Postives = 316/583 (54.20%), Query Frame = 1 
Query:  160 EDNREYNPVVFDVLKVSADEIAQQLTLIDLPLFQHVEPEELTSCSWTSKRKHDNCPNIVKATKRFNQVSYWVTREILDTNTAKGRAERIAYFIKVAKKLQELNNLNCLKAVVSGLQCTPIYRLNKTWNVVPKRDKEKLEKLNELVCEENNSSKLRLHLQTTKL-PCIPYLGMYLTDLTYINTIHPPTGGL--DVERTNKMNEILRIIADYQQSL-YDFKPIYAVQNYLNSVKYIDELQKFMEDENYKLSCQIEPTELQTRAERNGSTGKRETVSESDDTYRLYPKQPASKSNSLNPRRTGSSINPKSASLNLPSTPFNQHRSPSPNRKDFVP-GHRKVKSLGSTQIFLQXXXXXXXXXXXXXXXXXXXXXXRYNLVDDSILEDNLNT---------------------DIRSSTSYDS----GLDHDEPETHPIIRSNYI----------SEDTKPEFY---FKLQGFLKRKTLKRNATSPKVANWQRYWVGITCSHLVYFLPKYRAFGGHDRNNFKENAEKILPLFGSDVCECNEEGS---FQLTDESGANVYRFRAGTNLNRKLWMDFIKEASNGGMKEPP 1770
            E  + ++ VVFDVLKV+ +E A Q+TL+D+P+F+ ++P+EL+SC W  K K+ + PN V  T+RFN VS+WV REIL   T K RAE ++++IK AKKL ELNNL+ L AVVSGLQ  PI+RL KTW ++ ++DK   EKL  ++ +E+N  +LR ++ + K+ PCIPYLG+YL+DLTYI++ +P TG +  + +R+N MN ILRII+D QQS  YD   +  VQ YLNSV+YI+ELQKF+ED+NYKLS +IEP          G++  R   S  D    + P+  AS      P+    S+  + A   LP TP      PSP  ++ +P GHRK  SLG   I   + +    ++   +           +L+DDS++E +  +                     ++   TS+ +     L H       + R+ Y           SED     Y     +QG L+RKTL +    P VA+W +YW  +  + L Y+  K  +    +R +FK  + K + + G  V   ++      F LTD    N Y+F+AG  +N  LW   +  A     ++ P
Sbjct:   33 ELKKSFDAVVFDVLKVTPEEYAGQITLMDVPVFKAIQPDELSSCGWNKKEKYSSAPNAVAFTRRFNHVSFWVVREILHAQTLKIRAEVLSHYIKTAKKLYELNNLHALMAVVSGLQSAPIFRLTKTWALLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENEQRSNLMNNILRIISDLQQSCEYDIPMLPHVQKYLNSVQYIEELQKFVEDDNYKLSLKIEP----------GTSTPRSAASRED---LVGPEVGAS------PQSGRKSVAAEGAL--LPQTP------PSP--RNLIPHGHRKCHSLGYNFIHKMNTAEFKSATFPNAGPR--------HLLDDSVMEPHAPSRGQAESSTLSSGISIGSSDGSELSEETSWPAFERNRLYHSLGPVTRVARNGYRSHMKASSSAESEDLAVHLYPGAVTIQGVLRRKTLLKEGKKPTVASWTKYWAALCGTQLFYYAAK--SLKATERKHFKSTSNKNVSVIGWMVMMADDPEHPDLFLLTDSEKGNSYKFQAGNRMNAMLWFKHLSAACQSNKQQVP 576
The following BLAST results are available for this feature:
BLAST of TCONS_00054290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RGPS21.857e-10336.71Ras-specific guanine nucleotide-releasing factor R... [more]
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