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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054291 ID=TCONS_00054291|Name=TCONS_00054291|organism=Clytia hemisphaerica|type=transcript|length=1202bp tacaAGCtaacttatataaaaaaacaaaaaatgtcaatAGAAATTGGTCC ACCCCTTGAGGAGGCGCAACTCCCAATCTACGTTCCATTTGAAGAGAAAC ATTTTGTTGTACCTGGAGATGTAATTACAGAAGACAGCGGCTTCATGAAA GGCCATGGAACATTTGCAGATGGCATGGAAAGACTGGCAGCATCAGTGGC AGGCACCGTTGAGAGAGTCAACAAACTAGTGTCAGTCAAACCTTTTAAAT CAAGATATGCTGGAGAAGTGGGGGATGTCATTGTTGGCCGAATATCAGAA GTTGCTCAAAAGAAATGGCGAGTTGATACTAACGCTAGAATGGATTCAGT TTTGCTTTTATCTGGTGTCAATCTACCCGGTGGTGAACTTCGTAAACGGT CGGCTGTGGACGAGTTATTGATGAGAGATTATTTAGTGGAAGGAGATTTA ATCGTGGCAGAAGTGCAATCTGAGTTTCAGGACGGTTCATTATCACTGCA CACTAGAAACTTGAAATATGGTAAATTACCTCAAGGAATAATGTTTAAAG TACCAGCTTCATTGATAAAGCGTTGTAAAACACACATGCATAACTTGCAC TGTGGTGCCACCATTATACTTGGAAATAACGGTTATGTGTGGATTGGTCC TGTAATGCACGATATGGACTTGTCTTTACGGGAAGTTAAACGAGAGAAAA TCAGTAAAGTTGATAGGGAATCAATAGCAAGGTTGAGGAATTGTATAAGT GCCATGGCAAGTCATGGAGTGTTGTTATATGATACTAGTATTACATTCGC TTTTGAAGCATCATTGAAATATGATATCAAAGACCTATTGAAGCCAGATA TCCAAGTTGAACTGGTGGATGCAACGAGACGAAATCTTGCACAACATTTA TGATTCTTTTCTTGGTATCAATCTTTTGAAATCACTATCACTATTACATT GGATAAATGGATCTGTCTATTTAGTGTCTGTTTAATCATTTGGATAAAGT ATTGTATTGATCTTGATAATTACCAAGAAATCGAACAGTTaccgaaaata aaaaaagtgattTCTTTGTAAATAGATAATGTTAATGGAGTTCCCTTCAC AATCAAATCTTCATAGGTTCCTTACTTCTTGCAAAAATTGGTTCTTGTCC CTTGAAAGAACCTCTTGGTAGCTGGGTGACTCTTCTTACGTTTACCCTTG AC Run BLAST on NCBI protein sequence of TCONS_00054291-protein >TCONS_00054291-protein ID=TCONS_00054291-protein|Name=TCONS_00054291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
YKLTYIKKQKMSIEIGPPLEEAQLPIYVPFEEKHFVVPGDVITEDSGFMK GHGTFADGMERLAASVAGTVERVNKLVSVKPFKSRYAGEVGDVIVGRISE VAQKKWRVDTNARMDSVLLLSGVNLPGGELRKRSAVDELLMRDYLVEGDL IVAEVQSEFQDGSLSLHTRNLKYGKLPQGIMFKVPASLIKRCKTHMHNLH CGATIILGNNGYVWIGPVMHDMDLSLREVKREKISKVDRESIARLRNCIS AMASHGVLLYDTSITFAFEASLKYDIKDLLKPDIQVELVDATRRNLAQHL Run BLAST on NCBI transcript from alignment at scaffold_242:1699481..1700936+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054291 ID=TCONS_00054291|Name=TCONS_00054291|organism=Clytia hemisphaerica|type=transcript|length=1456bp|location=Sequence derived from alignment at scaffold_242:1699481..1700936+ (Clytia hemisphaerica) tacaAGCtaacttatataaaaaaacaaaaaatgtcaatAGAAATTGGTCC
ACCCCTTGAGGAGGCGCAACTCCCAATCTACGTTCCATTTGAAGAGAAAC
ATTTTGTTGTACCTGGAGATGTAATTACAGAAGACAGCGGCTTCATGAAA
GGCCATGGAACATTTGCAGATGGCATGGAAAGGTATTTATTTTGATTACA
ACAATTTGatttaagaattttgaaaacatttcttcgtattttttgtttca
aaggtTTCACTATAAATATTGGGCTGTAATCTTTGTTAGATCTACACACC
ATTTAGTCCTTAGCTCTTTTTTATGCTTGTATATTGTTTTCGATTTTCTT
GATTACATTTTTATAGACTGGCAGCATCAGTGGCAGGCACCGTTGAGAGA
GTCAACAAACTAGTGTCAGTCAAACCTTTTAAATCAAGATATGCTGGAGA
AGTGGGGGATGTCATTGTTGGCCGAATATCAGAAGTTGCTCAAAAGAAAT
GGCGAGTTGATACTAACGCTAGAATGGATTCAGTTTTGCTTTTATCTGGT
GTCAATCTACCCGGTGGTGAACTTCGTAAACGGTCGGCTGTGGACGAGTT
ATTGATGAGAGATTATTTAGTGGAAGGAGATTTAATCGTGGCAGAAGTGC
AATCTGAGTTTCAGGACGGTTCATTATCACTGCACACTAGAAACTTGAAA
TATGGTAAATTACCTCAAGGAATAATGTTTAAAGTACCAGCTTCATTGAT
AAAGCGTTGTAAAACACACATGCATAACTTGCACTGTGGTGCCACCATTA
TACTTGGAAATAACGGCTATGTGTGGATTGGTNACACACATGCATAACTT
GCACTGTGGTGCCACCATTATACTTGGAAATAACGGTTATGTGTGGATTG
GTCCTGTAATGCACGATATGGACTTGTCTTTACGGGAAGTTAAACGAGAG
AAAATCAGTAAAGTTGATAGGGAATCAATAGCAAGGTTGAGGAATTGTAT
AAGTGCCATGGCAAGTCATGGAGTGTTGTTATATGATACTAGTATTACAT
TCGCTTTTGAAGCATCATTGAAATATGATATCAAAGACCTATTGAAGCCA
GATATCCAAGTTGAACTGGTGGATGCAACGAGACGAAATCTTGCACAACA
TTTATGATTCTTTTCTTGGTATCAATCTTTTGAAATCACTATCACTATTA
CATTGGATAAATGGATCTGTCTATTTAGTGTCTGTTTAATCATTTGGATA
AAGTATTGTATTGATCTTGATAATTACCAAGAAATCGAACAGTTaccgaa
aataaaaaaagtgattTCTTTGTAAATAGATAATGTTAATGGAGTTCCCT
TCACAATCAAATCTTCATAGGTTCCTTACTTCTTGCAAAAATTGGTTCTT
GTCCCTTGAAAGAACCTCTTGGTAGCTGGGTGACTCTTCTTACGTTTACC
CTTGAC Coding sequence (CDS) from alignment at scaffold_242:1699481..1700936+ >TCONS_00054291 ID=TCONS_00054291|Name=TCONS_00054291|organism=Clytia hemisphaerica|type=CDS|length=2709bp|location=Sequence derived from alignment at scaffold_242:1699481..1700936+ (Clytia hemisphaerica) tacaAGCtaacttatataaaaaaacaaaaaatgtcaatAGAAATTGGTCC ACCCCTTGAGGAGGCGCAACTCCCAATCTACGTTCCATTTGAAGAGAAAC ATTTTGTTGTACCTGGAGATGTAATTACAGAAGACAGCGGCTTCATGAAA GGCCATGGAACATTTGCAGATGGCATGGAAAGACTGGCAGCATCAGTGGC AGGCACCGTTGAGAGAGTCAACAAACTAGTGTCAGTCAAACCTTTTAAAT CAAGATATGCTGGAGAAGTGGGGGATGTCATTGTTGGCCGAATATCAGAA GTTGCTCAAAAGAAATGGCGAGTTGATACTAACGCTAGAATGGATTCAGT TTTGCTTTTATCTGGTGTCAATCTACCCGGTGGTGAACTTCGTAAACGGT CGGCTGTGGACGAGTTATTGATGAGAGATTATTTAGTGGAAGGAGATTTA ATCGTGGCAGAAGTGCAATCTGAGTTTCAGGACGGTTCATTATCACTGCA CACTAGAAACTTGAAATATGGTAAATTACCTCAAGGAATAATGTTTAAAG TACCAGCTTCATTGATAAAGCGTTGTAAAACACACATGCATAACTTGCAC TGTGGTGCCACCATTATACTTGGAAATAACGGTTATGTGTGGATTGGTCC TGTAATGCACGATATGGACTTGTCTTTACGGGAAGTTAAACGAGAGAAAA TCAGTAAAGTTGATAGGGAATCAATAGCAAGGTTGAGGAATTGTATAAGT GCCATGGCAAGTCATGGAGTGTTGTTATATGATACTAGTATTACATTCGC TTTTGAAGCATCATTGAAATATGATATCAAAGACCTATTGAAGCCAGATA TCCAAGTTGAACTGGTGGATGCAACGAGACGAAATCTTGCACAACATTTA TGAtacaAGCtaacttatataaaaaaacaaaaaatgtcaatAGAAATTGG TCCACCCCTTGAGGAGGCGCAACTCCCAATCTACGTTCCATTTGAAGAGA AACATTTTGTTGTACCTGGAGATGTAATTACAGAAGACAGCGGCTTCATG AAAGGCCATGGAACATTTGCAGATGGCATGGAAAGACTGGCAGCATCAGT GGCAGGCACCGTTGAGAGAGTCAACAAACTAGTGTCAGTCAAACCTTTTA AATCAAGATATGCTGGAGAAGTGGGGGATGTCATTGTTGGCCGAATATCA GAAGTTGCTCAAAAGAAATGGCGAGTTGATACTAACGCTAGAATGGATTC AGTTTTGCTTTTATCTGGTGTCAATCTACCCGGTGGTGAACTTCGTAAAC GGTCGGCTGTGGACGAGTTATTGATGAGAGATTATTTAGTGGAAGGAGAT TTAATCGTGGCAGAAGTGCAATCTGAGTTTCAGGACGGTTCATTATCACT GCACACTAGAAACTTGAAATATGGTAAATTACCTCAAGGAATAATGTTTA AAGTACCAGCTTCATTGATAAAGCGTTGTAAAACACACATGCATAACTTG CACTGTGGTGCCACCATTATACTTGGAAATAACGGTTATGTGTGGATTGG TCCTGTAATGCACGATATGGACTTGTCTTTACGGGAAGTTAAACGAGAGA AAATCAGTAAAGTTGATAGGGAATCAATAGCAAGGTTGAGGAATTGTATA AGTGCCATGGCAAGTCATGGAGTGTTGTTATATGATACTAGTATTACATT CGCTTTTGAAGCATCATTGAAATATGATATCAAAGACCTATTGAAGCCAG ATATCCAAGTTGAACTGGTGGATGCAACGAGACGAAATCTTGCACAACAT TTATGAtacaAGCtaacttatataaaaaaacaaaaaatgtcaatAGAAAT TGGTCCACCCCTTGAGGAGGCGCAACTCCCAATCTACGTTCCATTTGAAG AGAAACATTTTGTTGTACCTGGAGATGTAATTACAGAAGACAGCGGCTTC ATGAAAGGCCATGGAACATTTGCAGATGGCATGGAAAGACTGGCAGCATC AGTGGCAGGCACCGTTGAGAGAGTCAACAAACTAGTGTCAGTCAAACCTT TTAAATCAAGATATGCTGGAGAAGTGGGGGATGTCATTGTTGGCCGAATA TCAGAAGTTGCTCAAAAGAAATGGCGAGTTGATACTAACGCTAGAATGGA TTCAGTTTTGCTTTTATCTGGTGTCAATCTACCCGGTGGTGAACTTCGTA AACGGTCGGCTGTGGACGAGTTATTGATGAGAGATTATTTAGTGGAAGGA GATTTAATCGTGGCAGAAGTGCAATCTGAGTTTCAGGACGGTTCATTATC ACTGCACACTAGAAACTTGAAATATGGTAAATTACCTCAAGGAATAATGT TTAAAGTACCAGCTTCATTGATAAAGCGTTGTAAAACACACATGCATAAC TTGCACTGTGGTGCCACCATTATACTTGGAAATAACGGTTATGTGTGGAT TGGTCCTGTAATGCACGATATGGACTTGTCTTTACGGGAAGTTAAACGAG AGAAAATCAGTAAAGTTGATAGGGAATCAATAGCAAGGTTGAGGAATTGT ATAAGTGCCATGGCAAGTCATGGAGTGTTGTTATATGATACTAGTATTAC ATTCGCTTTTGAAGCATCATTGAAATATGATATCAAAGACCTATTGAAGC CAGATATCCAAGTTGAACTGGTGGATGCAACGAGACGAAATCTTGCACAA CATTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054291-exon-scaffold_242-1491911889:1699481..1699662 | TCONS_00054291-exon-scaffold_242-1491911889:1699481..1699662 | Clytia hemisphaerica | exon |
TCONS_00054291-exon-scaffold_242-1510915933:1699481..1699662 | TCONS_00054291-exon-scaffold_242-1510915933:1699481..1699662 | Clytia hemisphaerica | exon |
TCONS_00054291-exon-scaffold_242-1575043694:1699481..1699662 | TCONS_00054291-exon-scaffold_242-1575043694:1699481..1699662 | Clytia hemisphaerica | exon |
TCONS_00054291-exon-scaffold_242-1491911889:1699847..1700249 | TCONS_00054291-exon-scaffold_242-1491911889:1699847..1700249 | Clytia hemisphaerica | exon |
TCONS_00054291-exon-scaffold_242-1510915933:1699847..1700249 | TCONS_00054291-exon-scaffold_242-1510915933:1699847..1700249 | Clytia hemisphaerica | exon |
TCONS_00054291-exon-scaffold_242-1575043694:1699847..1700249 | TCONS_00054291-exon-scaffold_242-1575043694:1699847..1700249 | Clytia hemisphaerica | exon |
TCONS_00054291-exon-scaffold_242-1491911889:1700320..1700936 | TCONS_00054291-exon-scaffold_242-1491911889:1700320..1700936 | Clytia hemisphaerica | exon |
TCONS_00054291-exon-scaffold_242-1510915933:1700320..1700936 | TCONS_00054291-exon-scaffold_242-1510915933:1700320..1700936 | Clytia hemisphaerica | exon |
TCONS_00054291-exon-scaffold_242-1575043694:1700320..1700936 | TCONS_00054291-exon-scaffold_242-1575043694:1700320..1700936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_242 | supercontig | scaffold_242:1699481..1700936 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003723 |
RNA binding |
Blast
BLAST of TCONS_00054291 vs. Swiss-Prot (Human)
Match: EXOS2 (Exosome complex component RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2) HSP 1 Score: 332.413 bits (851), Expect = 2.131e-111 Identity = 160/270 (59.26%), Postives = 209/270 (77.41%), Query Frame = 1
Query: 94 EKHFVVPGDVITEDSGFMKGHGTFADGMERLAASVAGTVERVNKLVSVKPFKSRYAGEVGDVIVGRISEVAQKKWRVDTNARMDSVLLLSGVNLPGGELRKRSAVDELLMRDYLVEGDLIVAEVQSEFQDGSLSLHTRNLKYGKLPQGIMFKVPASLIKRCKTHMHNLHCGATIILGNNGYVWIGPV--MHDMDLSLREVKREKISKVDRESIARLRNCISAMASHGVLLYDTSITFAFEASLKYDIKDLLKPDIQVELVDATRRNLAQH 897
+KH VVPGD IT D+GFM+GHGT+ G E+L ASVAG+VERVNKL+ VK K+RY GEVGD++VGRI+EV QK+W+V+TN+R+DSVLLLS +NLPGGELR+RSA DEL MR +L EGDLI AEVQ+ F DG++SLHTR+LKYGKL QG++ +V SL+KR KTH H+L CGA++ILGNNG++WI P + + E +S DRE I+RLRNCI ++ + ++LYDTSI + +EASL + IKD+LKP+I E+V TR+ L +
Sbjct: 23 KKHLVVPGDTITTDTGFMRGHGTYM-GEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQ 291
The following BLAST results are available for this feature:
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