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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054293 ID=TCONS_00054293|Name=TCONS_00054293|organism=Clytia hemisphaerica|type=transcript|length=1839bp
AGTTTTTACTGTGAAATTTCTTTGTGCCGGCAAAGATTTAGATAACAAGA
CATACTGAATTCCCACGACTATCCAGCAAAATTCTTCAGaaaATGAAGTC
ATTTTTGCGGCTACTTGCTACCTTTTTCCACGCATATACTATGGTCTGTG
GACAGCAAGAAAAAGCCTCGTTCGCAATCAAGACACCTTACGCTTTACAC
GAGAATACAGACGTTTTGATACTCAGACCCCAACCTCAATGTAAAGTTAA
GCAACTTAATTTCGTACACCGACATGGACATCGCTTTCCCTCCAAAAACT
ACATCCTAAACTTCAAAGAATTGTCGAAACTCATCAATTGGAAGGTCGAG
TCGCCCCCGGAAATGGTGCTAGGTTTACCCTGGGAGCCGCCATTAGATGA
AGACCATAAATCACACTTAACACACGTGGGAGAGAAAGAACTATACAACA
TCGGGATCCGTACACGGAAACGTTTTCCGGAGCTGTTTGAGCAACGTTAC
AACACGAGACGTTTCAAGTTCATGAGTACGAATAAGTTACGTACTACTCA
CAGTGCGACGTCTCTtgcagctggtttatttgatGGCGACGGTTCGCTAC
ACGGCAGGATTCAACCGATCGCTTTAGATATATCACCGAACGATTGTCGC
GTATTGAGATTCTACGATAATTGCCACCGCTATaaacaagaaatcaaaaa
gaacgCGATAGCCCTTTCCGAACATGAGATATTCTTGCAtggaaaagaaa
tcaaaaaagttgcGGACAAAATAAAGGTCAAATTGAACCTTCCAAATATA
CAGTTAACTCATCGTAGTTTGGACGCTATTTTCATCGGCTGCGCGTATGA
GCTCTCCATGTTTGACGGNGTTAACTCATCGTAGTTTGGACGCTATTTTC
ATCGGCTGTGCGTATGAGCTCTCCATGTTTGACGGTAGCTTAGATACCGG
TCTCTGTTCTTTACTCGATGACGAAGATCGCCGGGTTTTAGAATACGCTG
ATGACTTGGAGAAGTTCTACACTTCTGCCAACCCAAACAATCCGCTAACT
TATCAGATCGCATGTCCGTTATTGAAAGATATGCTTGATTACCTGCAAGC
TTCCAGAGATGGCGACACCATGTTGGTTGGGATCTTCAGATCTGCGCATT
CGACCGCCATGTTGATGATGTATACATTGCTTGGATTAAACAAACAACAT
GTTCCATTGAGAAGTGAAAATTTCCAACATTATCTTAAGGGGAGACGACA
ATATTTTCGAAGCTCACAAATCACGCCGTTTGCTGCGAACTTCTATTTCG
TCTTATACGAATGTTCGGGCGNATCACACCGTTTGCTGCGAACTTCTATT
TCGTTTTATACGAATGTTCGGGCGAATGGAAAATTCAGTTATATTGGAAC
GAACGCTTAGTGAAAATGCCGTGTTGTGTTTCAGAGCTAGATTGtggttt
tgatgttttcatGGAGTATTATCGAAAGATTGTTCAAGAATGTGATACTG
AACTTTGTAGAGAAAATGCAGAGAATATCACAATAAGTAAACAAACTGAA
AGTCATCACCAGGCCTCCTCGGAGGACGATGGCAATTTCTATTTGAAGAC
GATAACATTGTCTTCAATTATTTTCTCAGTGGTCAAGAAATTCATATTGG
ATTGGATTCTAAACTATGTGAAACATTCGAATTCTAAGCAAGACTGAGAA
AAAACACCTCATTTGTAAAcgcataatttttaaaagagTTGCTGTGTAAG
TCCCAGCTTTGTCGTTGTGTTTTAAATGTTGCAATAAGCTAATTTTTTTG
AGTaccctttttttgattttttaggaaaataagaAACAG Run BLAST on NCBI protein sequence of TCONS_00054293-protein >TCONS_00054293-protein ID=TCONS_00054293-protein|Name=TCONS_00054293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MKSFLRLLATFFHAYTMVCGQQEKASFAIKTPYALHENTDVLILRPQPQC
KVKQLNFVHRHGHRFPSKNYILNFKELSKLINWKVESPPEMVLGLPWEPP
LDEDHKSHLTHVGEKELYNIGIRTRKRFPELFEQRYNTRRFKFMSTNKLR
TTHSATSLAAGLFDGDGSLHGRIQPIALDISPNDCRVLRFYDNCHRYKQE
IKKNAIALSEHEIFLHGKEIKKVADKIKVKLNLPNIQLTHRSLDAIFIGC
AYELSMFDXVNSS Run BLAST on NCBI transcript from alignment at scaffold_242:1742904..1745632+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054293 ID=TCONS_00054293|Name=TCONS_00054293|organism=Clytia hemisphaerica|type=transcript|length=2729bp|location=Sequence derived from alignment at scaffold_242:1742904..1745632+ (Clytia hemisphaerica)
AGTTTTTACTGTGAAATTTCTTTGTGCCGGCAAAGATTTAGATAACAAGA
CATACTGAATTCCCACGACTATCCAGCAAAATTCTTCAGGTAcgtttgaa
atgaaattttgaaatattttcaatgattGGTTGTGTGAAGACATGTACAG
TTACTGAAGAATTGTTTTATtccaacacccctgtctcacagccccggtga
aactgtTTCTcacagcggggataaaattttccatcgtaatcccaatgggg
atagagattctattgttccaagcttaaaagatccagtggggatggttttg
gagtgcaattttttacaatgaaatttgaatggggatgtaatcaaagtcaa
tttcccaatggggctgaaattttggggtatttttagtaccggggacgaaa
ttttggtcaaattttccagtggggctggggtcccagcgggtcggTGACAC
AGGGGGTGTATTCCATGAAATAAAGTGAAACCATTCATCGCCATTCTAGC
CCGAgctttgaattttgaagaacGTTAAagtaaccaaaattatcaatata
ttttgacctaGATTGTGGAATTTTATCCATTTGAGATATCTTTTGCCATC
ACCAAGGTTTCTGATTacgtactttcgttttcatccAATATAGTTACAAA
TcctaaaaagaaacaaataaacTTCTCTCCTCGGCTAAAATGGGATACTT
TAGAATCGAAAATCtttggtttttctttatttaaaaaaagcaaaacggAA
TTAGTTTTTATGGTTGGTTTAGAGTTTATGATCCAAAGCCAACTACTATA
TTTTTACAACGGTTTTGCTAAAGNGAGTTTATGATCCAAAGCCAACTACT
ATATTTTTACTACGGTTTTGCTAAAGTTTGAAAAGCTTCATAAGATAATT
TGACCAGTAATGTCAATGGAAATCAGGAATCACGCTTTTCTTGTGTATAA
AATCagtttttgatttatttttcatttagaaaATGAAGTCATTTTTGCGG
CTACTTGCTACCTTTTTCCACGCATATACTATGGTCTGTGGACAGCAAGA
AAAAGCCTCGTTCGCAATCAAGACACCTTACGCTTTACACGAGAATACAG
ACGTTTTGATACTCAGACCCCAACCTCAATGTAAAGTTAAGCAACTTAAT
TTCGTACACCGACATGGACATCGCTTTCCCTCCAAAAACTACATCCTAAA
CTTCAAAGAATTGTCGAAACTCATCAATTGGAAGGTCGAGTCGCCCCCGG
AAATGGTGCTAGGTTTACCCTGGGAGCCGCCATTAGATGAAGACCATAAA
TCACACTTAACACACGTGGGAGAGAAAGAACTATACAACATCGGGATCCG
TACACGGAAACGTTTTCCGGAGCTGTTTGAGCAACGTTACAACACGAGAC
GTTTCAAGTTCATGAGTACGAATAAGTTACGTACTACTCACAGTGCGACG
TCTCTtgcagctggtttatttgatGGCGACGGTTCGCTACACGGCAGGAT
TCAACCGATCGCTTTAGATATATCACCGAACGATTGTCGCGTATTGAGAT
TCTACGATAATTGCCACCGCTATaaacaagaaatcaaaaagaacgCGATA
GCCCTTTCCGAACATGAGATATTCTTGCAtggaaaagaaatcaaaaaagt
tgcGGACAAAATAAAGGTCAAATTGAACCTTCCAAATATACAGTTAACTC
ATCGTAGTTTGGACGCTATTTTCATCGGCTGCGCGTATGAGCTCTCCATG
TTTGACGGNGTTAACTCATCGTAGTTTGGACGCTATTTTCATCGGCTGTG
CGTATGAGCTCTCCATGTTTGACGGTAGCTTAGATACCGGTCTCTGTTCT
TTACTCGATGACGAAGATCGCCGGGTTTTAGAATACGCTGATGACTTGGA
GAAGTTCTACACTTCTGCCAACCCAAACAATCCGCTAACTTATCAGATCG
CATGTCCGTTATTGAAAGATATGCTTGATTACCTGCAAGCTTCCAGAGAT
GGCGACACCATGTTGGTTGGGATCTTCAGATCTGCGCATTCGACCGCCAT
GTTGATGATGTATACATTGCTTGGATTAAACAAACAACATGTTCCATTGA
GAAGTGAAAATTTCCAACATTATCTTAAGGGGAGACGACAATATTTTCGA
AGCTCACAAATCACGCCGTTTGCTGCGAACTTCTATTTCGTCTTATACGA
ATGTTCGGGCGNATCACACCGTTTGCTGCGAACTTCTATTTCGTTTTATA
CGAATGTTCGGGCGAATGGAAAATTCAGTTATATTGGAACGAACGCTTAG
TGAAAATGCCGTGTTGTGTTTCAGAGCTAGATTGtggttttgatgttttc
atGGAGTATTATCGAAAGATTGTTCAAGAATGTGATACTGAACTTTGTAG
AGAAAATGCAGAGAATATCACAATAAGTAAACAAACTGAAAGTCATCACC
AGGCCTCCTCGGAGGACGATGGCAATTTCTATTTGAAGACGATAACATTG
TCTTCAATTATTTTCTCAGTGGTCAAGAAATTCATATTGGATTGGATTCT
AAACTATGTGAAACATTCGAATTCTAAGCAAGACTGAGAAAAAACACCTC
ATTTGTAAAcgcataatttttaaaagagTTGCTGTGTAAGTCCCAGCTTT
GTCGTTGTGTTTTAAATGTTGCAATAAGCTAATTTTTTTGAGTacccttt
ttttgattttttaggaaaataagaAACAG Coding sequence (CDS) from alignment at scaffold_242:1742904..1745632+ >TCONS_00054293 ID=TCONS_00054293|Name=TCONS_00054293|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_242:1742904..1745632+ (Clytia hemisphaerica)
ATGAAGTCATTTTTGCGGCTACTTGCTACCTTTTTCCACGCATATACTAT
GGTCTGTGGACAGCAAGAAAAAGCCTCGTTCGCAATCAAGACACCTTACG
CTTTACACGAGAATACAGACGTTTTGATACTCAGACCCCAACCTCAATGT
AAAGTTAAGCAACTTAATTTCGTACACCGACATGGACATCGCTTTCCCTC
CAAAAACTACATCCTAAACTTCAAAGAATTGTCGAAACTCATCAATTGGA
AGGTCGAGTCGCCCCCGGAAATGGTGCTAGGTTTACCCTGGGAGCCGCCA
TTAGATGAAGACCATAAATCACACTTAACACACGTGGGAGAGAAAGAACT
ATACAACATCGGGATCCGTACACGGAAACGTTTTCCGGAGCTGTTTGAGC
AACGTTACAACACGAGACGTTTCAAGTTCATGAGTACGAATAAGTTACGT
ACTACTCACAGTGCGACGTCTCTtgcagctggtttatttgatGGCGACGG
TTCGCTACACGGCAGGATTCAACCGATCGCTTTAGATATATCACCGAACG
ATTGTCGCGTATTGAGATTCTACGATAATTGCCACCGCTATaaacaagaa
atcaaaaagaacgCGATAGCCCTTTCCGAACATGAGATATTCTTGCAtgg
aaaagaaatcaaaaaagttgcGGACAAAATAAAGGTCAAATTGAACCTTC
CAAATATACAGTTAACTCATCGTAGTTTGGACGCTATTTTCATCGGCTGC
GCGTATGAGCTCTCCATGTTTGACGGNGTTAACTCATCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054293-exon-scaffold_242-1491911889:1742904..1742992 | TCONS_00054293-exon-scaffold_242-1491911889:1742904..1742992 | Clytia hemisphaerica | exon |
| TCONS_00054293-exon-scaffold_242-1510915933:1742904..1742992 | TCONS_00054293-exon-scaffold_242-1510915933:1742904..1742992 | Clytia hemisphaerica | exon |
| TCONS_00054293-exon-scaffold_242-1575043694:1742904..1742992 | TCONS_00054293-exon-scaffold_242-1575043694:1742904..1742992 | Clytia hemisphaerica | exon |
| TCONS_00054293-exon-scaffold_242-1491911889:1743883..1745632 | TCONS_00054293-exon-scaffold_242-1491911889:1743883..1745632 | Clytia hemisphaerica | exon |
| TCONS_00054293-exon-scaffold_242-1510915933:1743883..1745632 | TCONS_00054293-exon-scaffold_242-1510915933:1743883..1745632 | Clytia hemisphaerica | exon |
| TCONS_00054293-exon-scaffold_242-1575043694:1743883..1745632 | TCONS_00054293-exon-scaffold_242-1575043694:1743883..1745632 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1742904..1745632 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003993 | acid phosphatase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003993 |
acid phosphatase activity |
Blast
The following BLAST results are available for this feature:
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