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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054296 ID=TCONS_00054296|Name=TCONS_00054296|organism=Clytia hemisphaerica|type=transcript|length=1077bp
GCAAGCATATGTTATATCAAGGCGTCGTGAAAATGCATTAAAACGACTTG
AGAATGTAATCCATCTGACTGTTTACAAGACGAGATTATGGAAAGATGTT
AAATATAACTTACAAAGGTTCCTGGTTGTCGGGATTGGGAATCTCTTGAT
CTTAATGTTGGGAAGTTTAATCTTCTTCTATATCGAGCATTGTCGTGATG
AAAAACCACCCAAGAATCTGAATATAGGAGAAAAGAGTTTTATACAGATA
TGCAATGACCCGAACTTACAGAAAGCTTATAATAAAACACATTCGAATAA
TGAGACTTCAATATTTCTAAAGAACATTGTTGATTTATGtgggaagaata
aacaattaGTTTTGGATGTACGAGAATGTAAATTGACTGTCTTGGAATGG
TATCGATGGATGGAATACACATTTAGTGTTTCTTTCACACTAGGTTATGG
ACGGATGGTGACGCGATCAGCACTCGGTAAAATATTGACCATCTTTTACG
CTATTCCCACAATCATCCTGTCCACTATAACGTACGTCTATTGCGGCAAC
ATGGTGAAATACGCCGTCAAGATATTCATCATTAATTTCGAAATGAAAAT
CCTGAAACGAAAAGATGTCACTAGATTGAATATCAAGGGTGTTTTGCTGC
AACTAATACTATGCACAATTCTTATAttatttttctcattattttttcat
attgctGAGTCAATGAATTTATCATACTTGGATTCATTCTACTTTGTCAT
GGTAACGCTATTTACAATCGGTTTCGGCGACATTGTTATTAATCTAGAGA
AACTGGTGGAACATCCAGAAATGTTTCTTCTAGGTAATGTCATATTCATT
TTCGGTCTCGGAACTTTAGCATCGTTGATTGCATCATTATGTGACCTGCG
CAATAAAGAAGTTCCAATTGCAGAGTTTATTAAAAAGACGACAAAAATGA
TTGGCCCTAAAGTGGATCTTAAACAAACtatattgaaaaataaacacACA
CTAAATGTCTTACCGAAAACTGAGCATAATAACGGAACGGCCCATAGTGT
CAATCACCGGGTGGATGAACAAACGGG Run BLAST on NCBI protein sequence of TCONS_00054296-protein >TCONS_00054296-protein ID=TCONS_00054296-protein|Name=TCONS_00054296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
QAYVISRRRENALKRLENVIHLTVYKTRLWKDVKYNLQRFLVVGIGNLLI
LMLGSLIFFYIEHCRDEKPPKNLNIGEKSFIQICNDPNLQKAYNKTHSNN
ETSIFLKNIVDLCGKNKQLVLDVRECKLTVLEWYRWMEYTFSVSFTLGYG
RMVTRSALGKILTIFYAIPTIILSTITYVYCGNMVKYAVKIFIINFEMKI
LKRKDVTRLNIKGVLLQLILCTILILFFSLFFHIAESMNLSYLDSFYFVM
VTLFTIGFGDIVINLEKLVEHPEMFLLGNVIFIFGLGTLASLIASLCDLR
NKEVPIAEFIKKTTKMIGPKVDLKQTILKNKHTLNVLPKTEHNNGTAHSV
NHRVDEQT Run BLAST on NCBI transcript from alignment at scaffold_242:1771666..1774828+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054296 ID=TCONS_00054296|Name=TCONS_00054296|organism=Clytia hemisphaerica|type=transcript|length=3163bp|location=Sequence derived from alignment at scaffold_242:1771666..1774828+ (Clytia hemisphaerica)
GCAAGCATATGTTATATCAAGGCGTCGTGAAAATGCATTAAAACGACTTG
AGAATGTAATCCATCTGACTGTTTACAAGACGAGATTATGGAAAGATGTT
AAATATAACTTACAAAGGTTCCTGGTTGTCGGGATTGGGAATCTCTTGAT
CTTAATGTTGGGAAGTTTAATCTTCTTCTATATCGAGCATTGTCGTGATG
AAAAACCACCCAAGAATCTGAATATAGGAGAAAAGAGTTTTATACAGATA
TGCAATGACCCGAACTTACAGAAAGCTTATAATAAAACACATTCGAATAA
TGAGACTTCAATATTTCTAAAGAACATTGTTGATTTATGtgggaagaata
aacaattaGTTTTGGATGTACGAGAATGTAAATTGACTGTCTTGGAATGG
TATCGATGGATGGAATACACATTTAGTGTTTCTTTCACACTAGGTAATTT
TTCTATCATACACATTAAAGGAACCTTTTCTCGCTCATAACCAAATAAAG
ATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTTGTTTTCATA
ACCTAATTTCTCTGTTCCATCATAATTACTTCGTTGGAacagtgaaaaag
aaaatcaattatttgaaaatttgttctaaaatttgccttttttgtaaatt
caaaatgaaatcgAATTAAAAACGCTTTTCGTTCGTCTAACTTTTGAAGA
TGATAATTTTGATTtatgtttaaatattttttttttgcatcgttcGCATA
AATTGATAGGTAGTACGAAATGAAATACATAGCGTGCATTGAGTACACAG
GGTCGACGTTTAGCTTTATAATCGGAAATGGTAGGAAAAGATAAGCTTCA
GAAAGACCTGAGAATTTTCAGAAGAGACTACTTTTGACAGAAAAACGATC
ATTTTGAGATAGAAGGCatcatatgaaaaaaaaaatgatttactGAAATT
TTAGAACGAATTATCTTTCGGGGGTTCTAATTTACGAAGTCGTCGTTTTG
TTTGATCTAAAAAGTTCTTTCTTCCAGCGCTGTGATCCTTGTCATTAGGG
TAAGACCTAGGCTCCAAGGGTAGGCTTATTCTTCTCTTCTCTTCTGAAAT
CCATTTTTAGCCAAAGATCGTCATTCCAAATTCTAAATCTTAAGAAATAC
CCACGAATTAAGCATTTTGAGCAAATGGTTTCAACTGCCGAAAGGAAAGA
TTCAAATATCACTTGTGCAGTTTGTACGTAATGTTATGAGGNACTGTCTT
GGAATGGTATCGATGGATGGAATACACATTTAGTGTTTCTTTCACACTAG
GTAATTTTTCTATCATACACATTAAAGGAACCTTTTCTCGCTCATAACCA
AATAAAGATaccctttttttttataaggaacacgtttataaggaactcga
ggctgaaaatggttaaaaaaataaggaattgttaaggaactgctcaggct
gagaataagtggatttgaaaataatgtaccttattgggacNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaggaactcgataaggaactttgagactgaaattctct
gtaaaaataaggaactccaggctcagagcaaagttaaggttccttataaa
aaaaaaaacgtgtagtcaaaATTATTTACAACAAAATCAGACTCAGTTTC
AGACTTACAAATACCCTGATCTATCGAATAGTATGATACTACTCTTTTAA
CATCTCAGAAATGTATGTGATCACAGGGCTTAGTGATCACAGGGTTTAGT
GTCGTCACTAAAGTTTTTCAGATTGTAAAGGGGAAACAGATGATAAAAAA
TAATATCCTTTTCCATTTTCTTACATCAGGTTATGGACGGATGGTGACGC
GATCAGCACTCGGTAAAATATTGACCATCTTTTACGCTATTCCCACAATC
ATCCTGTCCACTATAACGTACGTCTATTGCGGCAACATGGTGAAATACGC
CGTCAAGATATTCATCATTAATTTCGAAATGAAAATCCTGAAACGAAAAG
ATGTCACTAGATTGAATATCAAGGGTGTTTTGCTGCAACTAATACTATGC
ACAATTCTTATAttatttttctcattattttttcatattgctGAGTCAAT
GAATTTATCATACTTGGATTCATTCTACTTTGTCATGGTAACGCTATTTA
CAATCGGTTTCGGCGACATTGTTATTAATCTAGAGAAACTGGTGGAACAT
CCAGAAATGTTTCTTCTAGGTAATGTCATATTCATTTTCGGTCTCGGAAC
TTTAGCATCGTTGATTGCATCATTATGTGACCTGCGCAATAAAGAAGTTC
CAATTGCAGAGTTTATTAAAAAGACGACAAAAATGATTGGCCCTAAAGTG
GATCTTAAACAAACtatattgaaaaataaacacACACTAAATGTCTTACC
GAAAACTGAGCATAATAACGGAACGGCCCATAGTGTCAATCACCGGGTGG
ATGAACAAACGGG Coding sequence (CDS) from alignment at scaffold_242:1771666..1774828+ >TCONS_00054296 ID=TCONS_00054296|Name=TCONS_00054296|organism=Clytia hemisphaerica|type=CDS|length=2148bp|location=Sequence derived from alignment at scaffold_242:1771666..1774828+ (Clytia hemisphaerica)
CAAGCATATGTTATATCAAGGCGTCGTGAAAATGCATTAAAACGACTTGA
GAATGTAATCCATCTGACTGTTTACAAGACGAGATTATGGAAAGATGTTA
AATATAACTTACAAAGGTTCCTGGTTGTCGGGATTGGGAATCTCTTGATC
TTAATGTTGGGAAGTTTAATCTTCTTCTATATCGAGCATTGTCGTGATGA
AAAACCACCCAAGAATCTGAATATAGGAGAAAAGAGTTTTATACAGATAT
GCAATGACCCGAACTTACAGAAAGCTTATAATAAAACACATTCGAATAAT
GAGACTTCAATATTTCTAAAGAACATTGTTGATTTATGtgggaagaataa
acaattaGTTTTGGATGTACGAGAATGTAAATTGACTGTCTTGGAATGGT
ATCGATGGATGGAATACACATTTAGTGTTTCTTTCACACTAGGTTATGGA
CGGATGGTGACGCGATCAGCACTCGGTAAAATATTGACCATCTTTTACGC
TATTCCCACAATCATCCTGTCCACTATAACGTACGTCTATTGCGGCAACA
TGGTGAAATACGCCGTCAAGATATTCATCATTAATTTCGAAATGAAAATC
CTGAAACGAAAAGATGTCACTAGATTGAATATCAAGGGTGTTTTGCTGCA
ACTAATACTATGCACAATTCTTATAttatttttctcattattttttcata
ttgctGAGTCAATGAATTTATCATACTTGGATTCATTCTACTTTGTCATG
GTAACGCTATTTACAATCGGTTTCGGCGACATTGTTATTAATCTAGAGAA
ACTGGTGGAACATCCAGAAATGTTTCTTCTAGGTAATGTCATATTCATTT
TCGGTCTCGGAACTTTAGCATCGTTGATTGCATCATTATGTGACCTGCGC
AATAAAGAAGTTCCAATTGCAGAGTTTATTAAAAAGACGACAAAAATGAT
TGGCCCTAAAGTGGATCTTAAACAAACtatattgaaaaataaacacACAC
TAAATGTCTTACCGAAAACTGAGCATAATAACGGAACGGCCCATAGTGTC
AATCACCGGGTGGATGAACAAACGCAAGCATATGTTATATCAAGGCGTCG
TGAAAATGCATTAAAACGACTTGAGAATGTAATCCATCTGACTGTTTACA
AGACGAGATTATGGAAAGATGTTAAATATAACTTACAAAGGTTCCTGGTT
GTCGGGATTGGGAATCTCTTGATCTTAATGTTGGGAAGTTTAATCTTCTT
CTATATCGAGCATTGTCGTGATGAAAAACCACCCAAGAATCTGAATATAG
GAGAAAAGAGTTTTATACAGATATGCAATGACCCGAACTTACAGAAAGCT
TATAATAAAACACATTCGAATAATGAGACTTCAATATTTCTAAAGAACAT
TGTTGATTTATGtgggaagaataaacaattaGTTTTGGATGTACGAGAAT
GTAAATTGACTGTCTTGGAATGGTATCGATGGATGGAATACACATTTAGT
GTTTCTTTCACACTAGGTTATGGACGGATGGTGACGCGATCAGCACTCGG
TAAAATATTGACCATCTTTTACGCTATTCCCACAATCATCCTGTCCACTA
TAACGTACGTCTATTGCGGCAACATGGTGAAATACGCCGTCAAGATATTC
ATCATTAATTTCGAAATGAAAATCCTGAAACGAAAAGATGTCACTAGATT
GAATATCAAGGGTGTTTTGCTGCAACTAATACTATGCACAATTCTTATAt
tatttttctcattattttttcatattgctGAGTCAATGAATTTATCATAC
TTGGATTCATTCTACTTTGTCATGGTAACGCTATTTACAATCGGTTTCGG
CGACATTGTTATTAATCTAGAGAAACTGGTGGAACATCCAGAAATGTTTC
TTCTAGGTAATGTCATATTCATTTTCGGTCTCGGAACTTTAGCATCGTTG
ATTGCATCATTATGTGACCTGCGCAATAAAGAAGTTCCAATTGCAGAGTT
TATTAAAAAGACGACAAAAATGATTGGCCCTAAAGTGGATCTTAAACAAA
CtatattgaaaaataaacacACACTAAATGTCTTACCGAAAACTGAGCAT
AATAACGGAACGGCCCATAGTGTCAATCACCGGGTGGATGAACAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054296-exon-scaffold_242-1491911889:1771666..1772108 | TCONS_00054296-exon-scaffold_242-1491911889:1771666..1772108 | Clytia hemisphaerica | exon |
| TCONS_00054296-exon-scaffold_242-1510915933:1771666..1772108 | TCONS_00054296-exon-scaffold_242-1510915933:1771666..1772108 | Clytia hemisphaerica | exon |
| TCONS_00054296-exon-scaffold_242-1575043694:1771666..1772108 | TCONS_00054296-exon-scaffold_242-1575043694:1771666..1772108 | Clytia hemisphaerica | exon |
| TCONS_00054296-exon-scaffold_242-1491911889:1774195..1774828 | TCONS_00054296-exon-scaffold_242-1491911889:1774195..1774828 | Clytia hemisphaerica | exon |
| TCONS_00054296-exon-scaffold_242-1510915933:1774195..1774828 | TCONS_00054296-exon-scaffold_242-1510915933:1774195..1774828 | Clytia hemisphaerica | exon |
| TCONS_00054296-exon-scaffold_242-1575043694:1774195..1774828 | TCONS_00054296-exon-scaffold_242-1575043694:1774195..1774828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1771666..1774828 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
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