TCONS_00054297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054297
Unique NameTCONS_00054297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3050

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054297 ID=TCONS_00054297|Name=TCONS_00054297|organism=Clytia hemisphaerica|type=transcript|length=3050bp
ttcaaaatggcgtagcACACACACACAAAATTTACAATCACCAAAAAGGA
TAAACGCTCTAAATCCCAATTAAAATGATGGAGGTTGCCAACAAACAAAA
AGAAGACGACCCTTCAAACTCGATTGAAGATTATATTTGCAATGCAAAAA
CATTCTTGCTCCGTTCAGATGGTAAATCAGGTGTTACAATGTATGACCAT
CTGGTTAGCATTTTGtctaaaatgattgaaaaagaacCTGAGAATGCAGC
TGAATTACTGAAAGAGTTTAGCCGCAAAGAACACAAAGCTAGATTCATTC
CTGAAAAAGATACCATTGAAGAAAGAATTGAGACCACAAATAAAGTGAAT
TTAGCAAATGATCAAAAGAACCTTTTTaatCGTAAAGACATTGAGGTACC
AAATACTGTCGGTGATAATGAGGCAGAAGAAGAAGAACGTCTCATTCTTG
CTGATGTCATGGAAAACGCCTTTTACTTTGAACAAGCTGGAATTGGCCTA
GGGAGAGAAGAAGTTTTTCGTGTTTTCCTTGCATTAAAACAATTGACTGA
TTGCTATCAATTGAAATCATGCAGATTTTGGGGAAAAATTCTTGGCTCTC
AAGCCAATTACATCATTGCTGAAGTTGAATTTCGGGACGGTGAAGATCCg
cataaagaaaatgaagatcctGACAACCTGAGTAGTTCAAGGattAGTGA
AGCAAATGAACCGATAGAAGATGAAGTGGATGACATACCAAAACCAGATT
ATAAACCACCTGTCACTATACCTCAAGAAGATTATGGTGAAGGGTGTAAC
TCCAAAATTTACTACGTCTGTAACGATGCTGGTTTATCATGGCATCGTTT
ACCGCCTGTTACTCCACAACAAATTCACGTTGCTCGTCAGATCAAAAAGT
TTTGCACTGGTGACCTCGAAGCACCAATTATCAGCTATCCACCTTTCCCT
GGTACGGAGATCCATTACTTGCGAGCTATGATCGCCAGGATATCAGCTGC
AACACACATCAGTCCTCAAGGATATTACATCtttgaagaagatgaagatg
aagaaattgATGAAACAGCACGTAAAACGTTCATTCCGAATATCGAGTTT
GAAGGGATTCCCGTCAGTGACTTGTGTGATGCTACCAACACATTTTGGGT
CCATCATAATCCATACATTCTTCCTCAGGGTCGTACAACGTGGTTCAATC
CTTTAcaaaaaaatgatgaagaagaaatcgaagaagaagaagatgaagag
gAAGATCGTGAAGAACCTGATGATATCGAACCTGAAGAAGGACCTCCTCT
CCTCACCCCTCTCTCCGAAGATCTAGAAATCAATAGTCAAACAGCTTGGA
CGGCTAATAAATCCACTGGCTTGGTTTCTCAATACGCCATCGCTGTCATG
CATAGCAACTTGTGGCCTGGCGCCCATGCTTTTGCCGTTGACaaGAAATT
TGACAACATTTACATCGGCTACGGATTGAAATACAGTTCTGAAAATTACA
GTCCACCTGCACCGCCCGCCGCCCAAGAAGAATATCCAAGCGGTCCTGAA
GTAACGGAAGCCGAAGATCCAACTGTCGAACAAGAGCGTGCGCTGGCAGC
CGCTCAACAAGAAGCGATGGAAAACGAAGATGAGGATGAGGAAAGTGAAG
ATTATGATGAAGAAGATTAAAAAAACATAATTTCTcctttttttgtccaa
aaaaaaaatgatgaaaaatgagaaaagacacaTGAATATTCATAACAAAA
TACTTCGTGAACTGAATTGATTTCTTGTATGTTTGGATATAATGAATGTC
TTTTTGACAGGAAATTTGGTGGGAGGAGTAATATGCCATTCCTGTGAAAT
GACGTGACGCGTCATTTTGGATCAATTTGGTACGTTAGAACTTGGCTGTT
ACGAGGCCTCATTCGAGATAAACCATGTCATCCTgagaaattgaatttca
aaggatatGAAATTACTTTAGAAAGCTATTGAAAACATCACTAacaatct
ttggatgttttcttACAAGTGATTTAGGAAGTTTAACATTTATATTAAAT
TTTAatgatttgttttgttgattAGTGATATTAGCTAGTCTGTTATTTGT
CAGGTTATAAAGGGctttataatattttatgtgTTGAAAGGTTCACTCGG
TTCACAAAGCGTTGGATGGTGGTAAAGgcttcccagctgacacacaacat
tgtttcaacgtttaattaacgttcacaacgtccttataacgttaaatgaa
cgttgaaacgacgttgtgtgcaagctgggttacatgtttttttttataag
catgtgtctgcccctatatcaggctcgcgttatgcttagcattctattgt
tctcaaacaatagagccattgtctaggtgccaaaaactgagcctacttgt
gcttataaacgttatgcttataaaaaaaacatgtattattaACAAGTTTG
ATGGCTTGAAGTGGAAAAATGTTCTATTCTTTGGTCGCTTAATAAAAAAT
GGGTTGCCCAAATATTATAGAAAAGTTATCTCGattgaagaaatattttg
atcgATTATTTCaacaagttttcttttttaattatgaTTGCTTTTGTTTC
GTGTAATTTTTTCTTCACCAATATTTTGCTGAAGAAATTTTTCAGAGACA
AACTTTTCTCTACACATTCCTGACTTGGATGTTTGGAAAAGGAAGaagga
agttttttttgaaatattcagaAAGATATTGGATTATGAATGACCTTCTC
CCGACCTTCTTATCTAATTCATGAATGGTGGGATTGTAAATTCAAATGGG
GGTTCATAAAATTACAGTGACAATTATAATTAGGTCTTTTTTTCACGAAG
GACGATTTTTCAGTGGATTTTTCTAGTGGGAGGGTTCTACACCGGGTCAA
TGATACGTCTCCAGTTACTAAGATATTTTAGGGGCTTTGTAATTGATTTC
TATCGGTATTATgtaaagtaaatattttctataTAAACTTGACATTCACA
TTAGCTTGTTTATAGAAAGATTAATTTATTGGTTGAATTCTTTCACCTCA
Run BLAST on NCBI

transcript from alignment at scaffold_242:2277..15304-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054297 ID=TCONS_00054297|Name=TCONS_00054297|organism=Clytia hemisphaerica|type=transcript|length=13028bp|location=Sequence derived from alignment at scaffold_242:2277..15304- (Clytia hemisphaerica)
TTCAAAATGGCGTAGCACACACACACAAAATTTACAATCACCAAAAAGGA
TAAACGCTCTAAATCCCAATTAAAATGATGGAGGTTGCCAACAAACAAAA
AGAAGACGACCCTTCAAACTCGATTGAAGATTATATTTGCAATGCAAAAA
CATTCTTGCTCCGTTCAGATGGTAAATCAGGTGTTACAATGTAAGTTCTT
GAATATTTTTTGAGAAATATTTTTCAGCTTTTTTATTTTATCCAGCTTAA
AAAGGTACTTAATTAAGCTTAGAAAGTTAGTTGAAGCCAATTTCTGAGAA
TGACAATGTAATTTCAGTTTTCTAACTATTTTTAACTGTATAATTTCTGA
CATGTTCTGCATGCAACAGGATGAAAAAACAAGTTGTCTACAAACTATAT
ACCAGACCCGATCAATCATCGAACTTGTCGAACCAATCGAACAATTGAAC
TAATCGAACTCCATCGAACGATTAAAGTTCAATTAAAAAAATTAATCGAA
ACTTAATCGAACACTCACAATTTTTGAAGCAATACAGAGCAATAGCAGTT
TCAATTAGTTCGTTCAGTAACTAAAAAGTTCGATAAGTTCGATGATATCA
AATCCTCATATCTTCCCTCGCTTGCAAAAAGCTTTGTCCTGGCACGCGAT
TGCCATTTCGAAAGTTCCCGGACTTAACAGCTTGACGTTTATTGTACCCG
GATATTTGTCTATCCGGAATAAAGTCCGTCCAGCCCCTCTGTTGCGATTT
CGCGCAAGGCCGAGTGGCAGAATACTACGGATGCCCAACAAACCGCCTCT
GGCGCTAAAAGGAAAGGATACAGGAAAAGTGTGTAATCCATTATCGGAAG
TAATTTCCCGATTTATATACATTCCGAATTTGGCTTTGAAAAGAAGCTAA
TATACGTTGACGGAGCAGCACAAACTTGTCGAACAAAATTGGTTTATCAT
CAAACTGATCGAACCGAAAACCCATTAATCGAACTTAATCGATTGTTTGA
TTGGTTCGACAAGTTTGATTGATCGGGTCTGGTATATAGTTCTAAACCCT
CAATTGTAAATGAAGTGTGCCGTCAAAGGCCATCAGGTTTTTTGTCTGGT
GCCAAAAAGTGTTATTAAATTACTCTACAAACAATTTCCAGTGCTTTAGG
GCAATGGAATTGGATTTCAAGTTTACTGTAAGATCTACTTTGGGCCATTC
CAGAATTTGTCTGTAAAAGGCAAGGGGGCGGACGACACGGGATTTCCGAG
GGCAAAAGTTCACTAAAATTTGAATTTTCCAAGGGCAAGGCGAGAGAAGA
GAATGTATGAATGTCCAAGGCAATTGAATTAAAAAAGGCAAAAAAGAGTG
GAATTTCCGATGGATATTGCCGAAATACATGGATTTTAATCAGAATTTCC
GATCACCACTGGAAGAGAAAAATTATTTCAGAGGCAACAAAAAATTAAAA
AATGCACCTGGTCTGAAGGGGGGGGGGACAAAAGTTTTCTGGAATGGCCC
TTTCTGAATTCGATATGTGGGCGAGTTGTCTTTATTCATTATTCATTATT
TTACAACACACACCAAATTTTATGGAGATTATGGCATTTTTTAGCCTATT
AAAGCCTGTTAAAGCCTAATAATTCAAAATACAAAAGTTTCAACCTAAAT
CAAGAAATATTTGCTCCTCTAGGCCATTTTTTCACGTGAAAATTTTAATT
TTCCCGAAAGTTTAAATGCTTGTGAAAAAGATTTTTTCGTCAAATGTGCA
AAAGTTTGTACGTGTAACTGCGTCTAAAGTACAATGCTGGATATTTGTTC
AATTTTTCTAATTTTCTCAGTCAAACAAGGGGTTTTCCACTTTCAGCCTG
CCTGCCCACTGTGGTGCCAAAGCTATCTTTCAATGTTCAACCATAATAAA
GTGACAACCTGATGGATCAGAAATTGATCAATTATGGTTTGATTCTCCCA
CCTTATGGTTGAAATATGAGAGTTTAATTGTGACTCCTAATGTGATTTAA
AGTACCTAAAAATTGCAAACGAAAACTGGGAGCTAAAATACACCCAAATA
TTTGGGGGGACCTGATATGTTTTTTTGAGGGGGGCTGGAATTTCAATGGT
CCCAGGGCCACCAGGGCTGACTATTGCCTCTATTATTTATATCACCACAT
TTTTATCCAAAAACCTTTCATTTTACAGTCTATCAATTCTGTTTGTTTTC
ACTTGTGTCTACCACCTTGAATTAACCATTACAGTCAATAGAATAGAAAT
GTGACTTTCCAAAAAACGATATTACAGTAAATCAACAAATATTTTATACT
AAGTATAGAACTGGGGGCTGCTTAAAACGCTTTTAATCTTTGGGGGACCT
ATTTTTTTACCTGGGACCTAGACTTGAGCTGACTCTATGATCTTACAACC
TATAAAAACATGGTAATTAACCAGCGAGGCAAACAGAAAATTAGAATATT
TTACCAGCCAAGTTTCACTTCAGAAAAAGAGCTAAATTTAGTGATATTTT
AGCTTTTCAATGCTATATGCACAAAAAAAGAAGTTTGTGTTCAATATTGC
CTAACTGGTAGTTAACAACCCTTTTGACCCTTTTTTTAATTAAGCACTAC
TATCATACTTTTTATTTTGATAAATGTTTATTCAATTTTAGGTATGACCA
TCTGGTTAGCATTTTGTCTAAAATGATTGAAAAAGAACCTGAGAATGCAG
CTGAATTACTGAAAGAGTTTAGCCGCAAAGAACACAAAGCTAGATTCATT
CCTGAAAAAGATACCATTGAAGAAAGAATTGAGACCACAAATAAAGTGAA
TTTAGCAAATGATCAAAAGAACCTTTTTAATGTAAGAAATATTTTTCAAA
ATAAAGCAAGTACACTTTCAATTTTCTTATGACTACTAGAGAAAAATAAA
TAAGTAGCTCAGCTTGAAATATATGGATAGATTTATTCTAAGTAATCAAA
AGGAGATAGGTTTGATTCTTCTGGAGAAGAAATTAGATTAAGCTCTGAAC
ACCTTGAAATGGTACGATGTGCACTGCAGAATGCTAAAAGTTTAACATTA
AAACAATCTTAGCTCGGTATATTCTATTTTTCAAGCCTGGCTCCATCTTT
CCTGCAAAAAGAAAATCTAGAATGTAAAGGTCAATTAGTTGCCTTTGTGA
ACAGTGAAGAAAGTAGTGGTCTCATGAAAAATTTTTGTCTAAATTCATTT
TGTTTCTCATACATTTCAGCGTAAAGACATTGAGGTACCAAATACTGTCG
GTGATAATGAGGCAGAAGAAGAAGAACGTCTCATTCTTGCTGATGTCATG
GAAAACGCCTTTTACTTTGAACAAGCTGGAATTGGCCTAGGGAGAGAAGA
AGTTTTTCGTGTTTTCCTTGCATTAAAACAATTGACTGATTGCTATCAAT
TGAAATCATGCAGATTTTGGGGTAAGAACAGGGCTCCCACAGCTCCTCAA
ATCTCCTCAATTCTCCTTAAATTTCAAATGTCTCCTCAATTCTCCTCAAA
TCTCCTACTTTTCTCGAATTTCTCCAATATTTTTNTACAATGCTGGATAT
TTGTTCAATTTTTCTAATTTTCTCAGTCAAACAAGGGGTTTTCCACTTTC
AGCCTGCCTGCCCACTGTGGTGCCAAAGCTATCTTTCAATGTTCAACCAT
AATAAAGTGACAACCTGATGGATCAGAAATTGATCAATTATGGTTTGATT
CTCCCACCTTATGGTTGAAATATGAGAGTTTAATTGTGACTCCTAATGTG
ATTTAAAGTACCTAAAAATTGCAAACGAAAACTGGGAGCTAAAATACACC
CAAATATTTGGGGGGACCTGATATGTTTTTTTGAGGGGGGCTGGAATTTC
AATGGTCCCAGGGCCACCAGGGCTGACTATTGCCTCTATTATTTATATCA
CCACATTTTTATCCAAAAACCTTTCATTTTACAGTCTATCAATTCTGTTT
GTTTTCACTTGTGTCTACCACCTTGAATTAACCATTACAGTCAATAGAAT
AGAAATGTGACTTTCCAAAAAACGATATTACAGTAAATCAACAAATATTT
TATACTAAGTATAGAACTGGGGGCTGCTTAAAACGCTTTTAATCTTTGGG
GGACCTATTTTTTTACCTGGGACCTAGACTTGAGCTGACTCTATGATCTT
ACAACCTATAAAAACATGGTAATTAACCAGCGAGGCAAACAGAAAATTAG
AATATTTTACCAGCCAAGTTTCACTTCAGAAAAAGAGCTAAATTTAGTGA
TATTTTAGCTTTTCAATGCTATATGCACAAAAAAAGAAGTTTGTGTTCAA
TATTGCCTAACTGGTAGTTAACAACCCTTTTGACCCTTTTTTTAATTAAG
CACTACTATCATACTTTTTATTTTGATAAATGTTTATTCATTTTTAGGTA
TGACCATCTGGTTAGCATTTTGTCTAAAATGATTGAAAAAGAACCTGAGA
ATGCAGCTGAATTACTGAAAGAGTTTAGCCGCAAAGAACACAAAGCTAGA
TTCATTCCTGAAAAAGATACCATTGAAGAAAGAATTGAGACCACAAATAA
AGTGAATTTAGCAAATGATCAAAAGAACCTTTTTAATGTAAGAATTATTT
TTCAAAAAAAATGCAAGTACACTTTCAATTTTCTTATGACTACTCCAGAA
TCATAAATAAGTAGCTCAGCTTGAAAGACATGACTAAATTTATTCTAAGT
AATCAAAAGGAGATGGGTTTGATTCTTCCTGAGAAGAAATTAGATTAACT
CTGAACACCTTGAAATGGTACAATGTGCACTGCAGAATGCAAACAGTTTA
ACATTAAAACAATCTTAGCTCGGTATATTCCATTTTTCAAACCTGACTCC
ATCTTTCCTGCAAAAAGAAAATCTAAAAGGTCAACTAGTTGCCTTTGTGA
ACGATGGAGAAAGTAGTAGTCTCATGAAAATTTTTGTCTAAATTCATTTT
GTTTCTCATACATTTCAGCGTAAAGACATTGAGGTACCAAATACTGTCGG
TGATAATGAGGCAGAAGAAGAAGAACGTCTCATTCTTGCTGATGTCATGG
AAAACGCCTTTTACTTTGAACAAGCTGGAATTGGCCTAGGGAGAGAAGAA
GTTTTTCGTGTTTTCCTTGCATTAAAACAATTGACTGATTGCTATCAATT
GAAATCATGCAGATTTTGGGGTAAGAACAGGGCTCCCACAGCTCCTCAAA
TCTCCTCAATTCTCCTTAATTTTCAAATGTCTCCTCAATTCTCCTCAAAT
CTCCTACTTTTCTCGAATTTCTCCAATATTTTCTTCAAATCTCCTCAATT
AGATTTGACCAAAAATAAAAAAAGCATTCAAGGTAGTATCGCTGGCCTTT
GAAAGATGTTTCGAAAGTTGATTTTCAAGAACAACATGCAAAATCGCTTC
GCTCGCACATTTCTTTACTCTATTATCATGTTTCCATTTTACTCATTCTT
TTTCAAAAACTCGAAATCAGTGGCGTTTTAGCAGGGACAGGGGCCACGAC
CACCCAACAGAGCTTTTTAAAGGGGGCGCTAAAAGAGCAAGGGGCACTAA
AGCAGATTTTTAAGACGCCCCAATCTTAAAAATTATACTTTATCCCCCCT
TAATTGCCGCCCAGGACCAATTTTACTAAAATAATTTTAAATTACTTTCA
ATTTTTCTTGCTCGCTTCCCTCACAATCTAGTTATTTGGTGATTTCTTTG
AAATCTTGCTAATTTACAAGTTTTTTTTTTGTGTAAAATGTAGCTTTATT
GAATGAAAACCTAACCGGCCCCAAGACCAATTTGCTAACAACAATATTAT
TTAAAACATAAAAACTCAATTTTTTCGCTCGCTTCGTTATCGCAGTACAC
AAAAATTTCTTTGAGTTTCTTTTTGATCTAGCAAATCTAAAATTTGTCTC
TTTTTCTTTCATGATTTAGGGTATCTTGGCAATTCGATTTTAAAAAGCTT
TAATTTTAGAATTTATAAATCTTTTCAGGTCTTTGTAGTTTTACACTTAG
AGCTACTACTCCCCTCTAAGGATAATTACCTAGGACCCCTCCCCCAAGAA
GGAGACTTTGGTAAACCTTTCCTTTGTTTAATTCGTAAAAAGCTCATTTT
TGCAATAAAGGAGACAATCTCAAAAGATTTTTGTGCATCTTTCAGGAAGA
GCCACCACCCCTACTGCATGTTTGGATGATGCCGATGTAAAACATTACCT
AATTTTTTCATTGAGCAGTACAGTGTTGCTTTTTTAACAACAAAAAGCAT
CATTTTAACTTGACAAGTTTACCGTCAAGAAAATTTCCTCAATTTTTCTA
AAAATATATGAAAAACTCCTAAAATTGTTACAGAAATCTCCTCAAAAAGG
CGAAAAATCCTCCTTAATTCTCCTCGATTCTCCTTAAATTTGAAATTTTG
AAAGCTGTGGGAACCCTGATAGAAGGAATGTCTTTGTTAATTTTGAATCC
CTTTTTCCGTGTTATCTGTATTAAATTAAGAAATCCAAGTTCAGTTTGAC
CACTGAGTATAACTAATTTTTAGCTACACTTTTAGATCCTAAGCAAGACA
AGGACATATCTGCTGTTCTAAGTTTAAATACAAATTATTCATCTTTGTTT
GTATAGGAAAAATTCTTGGCTCTCAAGCCAATTACATCATTGCTGAAGTT
GAATTTCGGGACGGTGAAGATCCGCATAAAGAAAATGAAGATCCTGACAA
CCTGAGTAGTTCAAGGGTATGTCATATTTAATTCAGCTTGGTATACCTTC
TTAGAAATATCTTTCTTTATTTTAGGGTCGTCGGTAAGTCGTTTAGTCAA
TAAGTTTGTAATTCATGTCATTCGATTTTGTTAACCAATACTGCATTTCA
AAAATCTCAAATTTGTGATAATAGATTAAAAATATGTTTTTCTTTTAGAT
TAGTGAAGCAAATGAACCGATAGAAGGTACGTTGTAATGGTTTGATTATT
CCTTCTTTCTTCTTTTGAAAACAGGATTGAAGTTCATTGTATATTAGTAT
ATGTATTATTTTTCTGATAGCTCCCATCAATAGCTATACTAGGGTTCAAT
TCATTTGAAAGAGTAATTTTTAAAGTTAAATGTGACAACCTTTTCACTTA
TGGTCAGAAATTAAGGAATGAATGATAAATGTTTATTTCCTTTTTTTTAA
TGTTCTCAGATGAAGTGGATGACATACCAAAACCAGATTATAAACCACCT
GTCACTATACCTCAAGAAGATTATGGTGAAGGGTGTAACTCCAAAATTTA
CTACGTCTGTAACGATGGTAGGTTTAAAAAAAAACTTGTATCCAAGCTCA
AGGCTCGGTCGATTATTGCATTTAGTACTAGTTTTAAACATACAAAATCA
TTTTATGAAGCCTGGTGATGTTGTCTTTTCTTTTATTAGCATAACATTTA
TAAGCATACCGAGGCTCACATTTGCAAAATAAAAAGCGTGAAACCAAAAT
TGCTGATGCTTCGAAAAAAATATGCAAATGACCAAGCATAATTTGAGACT
GAAATTGATATGCATTTTTAATGAGCTTTGGCCTGAATTTCTTTTACGCT
TTATAAAGCAATAGTGTAATTTTCGAAAAGCCCTGCAAATAATTTTTTCT
TGAGAATTTCTTATCTAAATGCTATAATAGAAAAATTTGACAAATGCCTT
ATTTTGAAAAAAAGGTACACATTTGATTACTCGTTTCTTCTTACTGGAGG
TGAACTTTTCTAGACTTCTGCAACACGATTCTTCTTGGGTTGGCTTGTCG
TAATATAGAAGTGGCCTTAAAGTACCTATTTGTAACACCCATGCTCTTTA
TTTTTATATTGTGATAATTCTTATTTCAGCTGGTTTATCATGGCATCGTT
TACCGCCTGTTACTCCACAACAAATTCACGTTGCTCGTCAGATCAAAAAG
TTTTGCACTGGTGACCTCGAAGCACCAGTAAGTATGGCCACTGATTGCTT
TTCCAGGCTCTCAGTCTAGTTGTAACTCAATCACTGCTTTCTTAATATTT
TTTCAAAGGAGTTTCCCAGTGCCTTTCATGAGTACTATGGCGCTTTCAGT
ATTATAAAAATATGGAGGCAAGGGGACAAGGCTTGAATTTTTTTTTTTAT
TATTGTTTTTTGTCTTCAATAAGGTTATTCTTATTTCGACCTTTCTCTGG
TAATACTGTAAGTGTTTCCTGGAATCCTATGCTTAATCCTATTGTTGTCA
AGCTTTTTGGTTGGTGGTTCTTATTATCAAAACCTTATCTAATGGGTCTA
TGTTTTTTAAATTTGGTAATTTTGGTAGTAAGATTTTATTAAAATGTCAA
AAGGTTTTAGAGAGCTAAAAGAAATCTCAGTGTTCTATTAGTAAAAGAAA
ATGAGAATGTAGAAAACACCTCCTGATAAAATAGGCGTAATCTAGATCCC
CCATCTCTAGAAACCTGAGTACGTATAAGGTTAAAAAGTAATGATTGTTT
CGTCAAAGAATGATACTCGCTTTAGAATTTTTGTAGGTAATTTCAAATCA
AGTGTATTCAGTTGTCTTTCCCACACCTTGTTTTGTGCGAAGTATGACTG
CAAATTATACATGTAAATTATATACCAATTAATATCTACTCCAGATTATC
AGCTATCCACCTTTCCCTGGTACGGAGATCCATTACTTGCGAGCTATGAT
CGCCAGGATATCAGCTGCAACACACATCAGTCCTCAAGGATATTACATCT
TTGAAGAAGATGAAGATGAAGAAATTGATGAAACAGGTATGATACTGCTT
TCTGATTGGCCAGCTCTCTCCAATGACGTCATCTTGTGAAGAAATCTGCA
ATTGGATTAGTATTCACATGGTGTCCACTTTGGTCGCTGATGAATTGAAT
TGTGATTTTCTCCGGAATCATTTCAAAGCGCCTAATAATAACGAAGATGG
TTCCTATTCATGATATGCACCACTGTAATGACCTAACGAAATTACGAACT
TTTCNAAGATGGTTCCTATTCATGATATGCACCACTGCAATGACTTAACG
AAATTATGCAACTTTTTAGTTTTCGTTCCACCCAATACGTCACTTTTTCT
ATTGTTTAAGTGACGTATTGGGAGGAAAATTTTTAAAATTCTCAGAAGAC
TCTCCAGTGGTGCATATCATGAATAATGATATTATTTAGATATTATTTAG
ATATTAATTATTCAATTAATCCTTTCAATTAAGTTCTTCCAAACCAATTC
GATTAATAAGACCTTAATTACTATCATGGAGCTATAATTCACTTTTCCTT
AAAATTCTATCTAGCACGTAAAACGTTCATTCCGAATATCGAGTTTGAAG
GGATTCCCGTCAGTGACTTGTGTGATGCTACCAACACATTTTGGGTCCAT
CATAATCCATACATTCTTCCTCAGGTATTTATGTCTAAATTCTTCTAAAT
TACTTAAACAACAATAAACTATATTGGGAGTTTATCTTGGCTTGGATCAA
AAGATTTATGTTTGGCTAAGTTTCGAGAGATTCTTCTCCCATCATCGGGC
CAATAAACTATTTCCACCTATTCTGAATATATCAGTTTTATGTTTGTAAA
TGAGTTTTTAAATTGTTTGCCCTTATCTTTCTCTATGAGCCAATGTCAGG
GTCTGAGAAATAAATGAACGCTGGAATTGCTGGTTGGATTTAAGGAGATG
AGCCTTATTAAAAGATTAGGACGTTTTAAACTAAAGCCAGTAAGGCTTAT
TTCCGAGTTCAGGCTTTTTAATAACTCTGTGTGTAATTTGTAGGGTCGTA
CAACGTGGTTCAATCCTTTACAAAAAAATGATGAAGAAGAAATCGAAGAA
GAAGAAGATGAAGAGGAAGATCGTGAAGAACCTGATGATATCGAACCTGA
AGAAGGACCTCCTCTCCTCACCCCTCTCTCCGAAGATCTAGGTAATTTAT
AATTCTTATAAAAGGACCCTCTCTCGACTGATTCCACTCCCTGAAGATCT
AGGTAATTTATAAGTCTCTCATTGAAGAGCCCCCTCTCCTCACGCCACTC
TCCGAAGATCTAGGTAATTTATAAGTCTTTCAAAGAAGGACCCCTCCTGA
TTCACTCTACTCCCTGAAGATCTAAGTAATTCATAAATTTCTCATTGGAC
CTTAAGAATCAACCTCCCTTTCACCACTTTCCGAAGATCTAGAAGTAACA
AAAGAGACACGCCTTGTATGTTTTACTCTTCTCGCGCCATTCTTAGATAA
ACCTAGGTGAAAATGTAAATATTTTAAACATCGAGTATGATTTTTGTTTA
CAGAAATCAATAGTCAAACAGCTTGGACGGCTAATAAATCCACTGGCTTG
GTTTCTCAATACGCCATCGCTGTCATGCATAGCAACTTGTGGCCTGGCGC
CCATGCTTTTGCCGTTGACAAGTAAGAATTTTTTTTATATAAACCACTAT
GTGTTGAAGATAATACACCCCTGTGTCACAGACCCGCTGGGGCCCCAGTC
CCACTGGAAAATTTGGCAAAAGTTTCGTCCCCGGTGGGAAAAATACCCTA
GAATTTCAGCCCCATTGAGAAATTGACTATGATTTCATCCCCATTGAGAA
ATTGACTTTGATTTCATCCCCATTTAAAATTCATTGTTTAGAAATTGCAC
TTCAAAACCATCCCCACTGGATTTTTTTAACCTTAAAAACAATATAATTT
TTATCCGNGTACTTCAAAACCATCCCTACTGGATTTTTTTAACCTTAAAA
CAATAGAATTTTTATTCCCATTGAGATTTCAATCGAAATTTTTATCCCCA
CTGTAGGAAAAAGCTTCACCGGGGCTGTGAGACAGGTGTGTAAGATCATT
TTAAATTGAACCTTTCTTTCAATGTCGTGTCTTAATGAATCATAACTGCA
AATCGGAGAATTACTTCTTGGACTTTATTTTAAGCACTACGGGGAGTTTT
ACCCCTTTTTTGTATGCATTCTAAACCCTTAAGCAAAATTTATGAAAAGA
GCATGGCGTTCTAAATTCTTATGGACTGGAGATTTCGGTTTTTAACCTTT
TCGTTATTCGTTAAAAATTCAGTGTTCTACTTTTCTTCTGTGGTGTAACT
GCATTTTGATGATTACTTTTACTTGTGCAGTGATTATGAATGAAATGTGT
CGATAACTTCCTACTTCCCATGTTGTGGTTTTAAGTTCTCAGAAATAAAC
ATTTTTTTGCTTACCACATGTGTTATTAAATGCTGATTACCAATGCACTT
GTCGTCATCAATCAATCTCATTTAAATCGAAAGCTAATTAGAATTTGAAT
AGGTTCTAATTGGATGCCTGCGTTTCTCTGTTATCTTCAGTAATTTTAGT
AAGTGATGTTTTTGTCTGGAAGAAGATAAGAGTGCCTTGAGTTTTTTTAT
AAGAAATCTTGAACATCTTTTTGGGATTATTATGGCTTTATAAATTCTGA
TTCAAACTCTTCTTATTTCTAGGAAATTTGACAACATTTACATCGGCTAC
GGATTGAAATACAGTTCTGAAAATTACAGTCCACCTGCACCGCCCGCCGC
CCAAGAAGAATATCCAAGCGGTCCTGAAGTAACGGAAGCCGAAGATCCAA
CTGTCGAACAAGAGCGTGCGCTGGCAGCCGCTCAACAAGAAGCGATGGAA
AACGAAGATGAGGATGAGGAAAGTGAAGATTATGATGAAGAAGATTAAAA
AAACATAATTTCTCCTTTTTTTGTCCAAAAAAAAAATGATGAAAAATGAG
AAAAGACACATGAATATTCATAACAAAATACTTCGTGAACTGAATTGATT
TCTTGTATGTTTGGATATAATGAATGTCTTTTTGACAGGAAATTTGGTGG
GAGGAGTAATATGCCATTCCTGTGAAATGACGTGACGCGTCATTTTGGAT
CAATTTGGTACGTTAGAACTTGGCTGTTACGAGGCCTCATTCGAGATAAA
CCATGTCATCCTGAGAAATTGAATTTCAAAGGATATGAAATTACTTTAGA
AAGCTATTGAAAACATCACTAACAATCTTTGGATGTTTTCTTACAAGTGA
TTTAGGAAGTTTAACATTTATATTAAATTTTAATGATTTGTTTTGTTGAT
TAGTGATATTAGCTAGTCTGTTATTTGTCAGGTTATAAAGGGCTTTATAA
TATTTTATGTGTTGAAAGGTTCACTCGGTTCACAAAGCGTTGGATGGTGG
TAAAGGCTTCCCAGCTGACACACAACATTGTTTCAACGTTTAATTAACGT
TCACAACGTCCTTATAACGTTAAATGAACGTTGAAACGACGTTGTGTGCA
AGCTGGGTTACATGTTTTTTTTTATAAGCATGTGTCTGCCCCTATATCAG
GCTCGCGTTATGCTTAGCATTCTATTGTTCTCAAACAATAGAGCCATTGT
CTAGGTGCCAAAAACTGAGCCTACTTGTGCTTATAAACGTTATGCTTATA
AAAAAAACATGTATTATTAACAAGTTTGATGGCTTGAAGTGGAAAAATGT
TCTATTCTTTGGTCGCTTAATAAAAAATGGGTTGCCCAAATATTATAGAA
AAGTTATCTCGATTGAAGAAATATTTTGATCGATTATTTCAACAAGTTTT
CTTTTTTAATTATGATTGCTTTTGTTTCGTGTAATTTTTTCTTCACCAAT
ATTTTGCTGAAGAAATTTTTCAGAGACAAACTTTTCTCTACACATTCCTG
ACTTGGATGTTTGGAAAAGGAAGAAGGAAGTTTTTTTTGAAATATTCAGA
AAGATATTGGATTATGAATGACCTTCTCCCGACCTTCTTATCTAATTCAT
GAATGGTGGGATTGTAAATTCAAATGGGGGTTCATAAAATTACAGTGACA
ATTATAATTAGGTCTTTTTTTCACGAAGGACGATTTTTCAGTGGATTTTT
CTAGTGGGAGGGTTCTACACCGGGTCAATGATACGTCTCCAGTTACTAAG
ATATTTTAGGGGCTTTGTAATTGATTTCTATCGGTATTATGTAAAGTAAA
TATTTTCTATATAAACTTGACATTCACATTAGCTTGTTTATAGAAAGATT
AATTTATTGGTTGAATTCTTTCACCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034243XLOC_034243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054297-exon-scaffold_242-1575043694:15115..15304TCONS_00054297-exon-scaffold_242-1575043694:15115..15304Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:12474..12663TCONS_00054297-exon-scaffold_242-1575043694:12474..12663Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:10135..10336TCONS_00054297-exon-scaffold_242-1575043694:10135..10336Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:8589..8698TCONS_00054297-exon-scaffold_242-1575043694:8589..8698Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:8379..8406TCONS_00054297-exon-scaffold_242-1575043694:8379..8406Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:8038..8145TCONS_00054297-exon-scaffold_242-1575043694:8038..8145Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:7378..7475TCONS_00054297-exon-scaffold_242-1575043694:7378..7475Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:6569..6710TCONS_00054297-exon-scaffold_242-1575043694:6569..6710Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:5931..6040TCONS_00054297-exon-scaffold_242-1575043694:5931..6040Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:5414..5561TCONS_00054297-exon-scaffold_242-1575043694:5414..5561Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:4934..5051TCONS_00054297-exon-scaffold_242-1575043694:4934..5051Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1575043694:2277..3882TCONS_00054297-exon-scaffold_242-1575043694:2277..3882Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:15115..15304TCONS_00054297-exon-scaffold_242-1510915933:15115..15304Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:12474..12663TCONS_00054297-exon-scaffold_242-1510915933:12474..12663Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:10135..10336TCONS_00054297-exon-scaffold_242-1510915933:10135..10336Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:8589..8698TCONS_00054297-exon-scaffold_242-1510915933:8589..8698Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:8379..8406TCONS_00054297-exon-scaffold_242-1510915933:8379..8406Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:8038..8145TCONS_00054297-exon-scaffold_242-1510915933:8038..8145Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:7378..7475TCONS_00054297-exon-scaffold_242-1510915933:7378..7475Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:6569..6710TCONS_00054297-exon-scaffold_242-1510915933:6569..6710Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:5931..6040TCONS_00054297-exon-scaffold_242-1510915933:5931..6040Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:5414..5561TCONS_00054297-exon-scaffold_242-1510915933:5414..5561Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:4934..5051TCONS_00054297-exon-scaffold_242-1510915933:4934..5051Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1510915933:2277..3882TCONS_00054297-exon-scaffold_242-1510915933:2277..3882Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:15115..15304TCONS_00054297-exon-scaffold_242-1491911889:15115..15304Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:12474..12663TCONS_00054297-exon-scaffold_242-1491911889:12474..12663Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:10135..10336TCONS_00054297-exon-scaffold_242-1491911889:10135..10336Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:8589..8698TCONS_00054297-exon-scaffold_242-1491911889:8589..8698Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:8379..8406TCONS_00054297-exon-scaffold_242-1491911889:8379..8406Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:8038..8145TCONS_00054297-exon-scaffold_242-1491911889:8038..8145Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:7378..7475TCONS_00054297-exon-scaffold_242-1491911889:7378..7475Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:6569..6710TCONS_00054297-exon-scaffold_242-1491911889:6569..6710Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:5931..6040TCONS_00054297-exon-scaffold_242-1491911889:5931..6040Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:5414..5561TCONS_00054297-exon-scaffold_242-1491911889:5414..5561Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:4934..5051TCONS_00054297-exon-scaffold_242-1491911889:4934..5051Clytia hemisphaericaexon
TCONS_00054297-exon-scaffold_242-1491911889:2277..3882TCONS_00054297-exon-scaffold_242-1491911889:2277..3882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:2277..15304 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.54783	9.42011	7.20534	4.78551	13.6175	4.41307	8.11322	13.0471	26.272	29.7392	23.1354	23.8119	5.51366	4.82029	2.80904	2.9289	1.93741	4.29322	3.66825	4.63707	6.25463	6.83653	6.31884	6.14906	4.31221	3.5981	11.9282	15.7693	4.41541	4.14416
Blast
[Close]
BLAST of TCONS_00054297 vs. Swiss-Prot (Human)
Match: RSH4A (Radial spoke head protein 4 homolog A OS=Homo sapiens GN=RSPH4A PE=1 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 5.598e-121
Identity = 248/487 (50.92%), Postives = 334/487 (68.58%), Query Frame = 3 
Query:  123 IEDYICNAKTFLLRSDGKSGVTMYDHLVSILSKMIEKEPENAAELLKEFSRKEHKARFIPEKDTIEERIETTNKVNLANDQKNLFNRKDIEVPNTVGDNEAEEEERLILADVMENAFYFEQAGIGLGREEVFRVFLALKQLTDCYQLKSCRFWGKILGSQANYIIAEVEFRDGEDPHKENEDPDNLSSSRISEANEPIEDEVDDIPKPDYKPPVTIPQEDYGEGCNSKIYYVCNDAGLSWHRLPPVTPQQIHVARQIKKFCTGDLEAPIISYPPFPGTEIHYLRAMIARISAATHISPQGYYIF--XXXXXXXXXXTARKTFIPNIEFEGIPVSDLCDATNTFWVHHNPYILPQGRTTWFNPLQKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLEINSQTAWTANKSTGLVSQYAIAVMHSNLWPGAHAFAVDKKFDNIYIGYGLKYSSENYSXXXXXXXQEEYPSGPEVTEAEDPTV 1577
            +E  I NAK +LL++   SG  +YDHL ++L+K++ + PENA ++ +  S+    A F  + D ++   E      +A  QK LF +  +E  +   ++E  E     L +VME+AFYFEQAG+GLG +E +R+FLALKQLTD + ++ CRFWGKILG + NYI+AEVEFR+GED  +  E+  +++  R +  +E  EDE D++PK  YK P  IP+E+   G N  +Y+VCN+ G  W +LPPV P QI +AR+IKKF TG L+APIISYPPFPG E +YLRA IARISA TH+SP G+Y F  EE E+EE  E  R +F  N +FEGI V DL ++ +  WVHH  +IL QGR  WFN +QKN     EEEE+E+E++++ D IE E G PLLTP+SEDLEI +   WT   S+ L+ QYAIAV+ SNLWPGA+AF+  KKF+N YIG+G KYS +NY+PP PP   +EYPSGPE+TE +DP+V
Sbjct:  207 LEITIQNAKAYLLKTSSNSGFNLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKALFLQGHLEGVDQELEDEIAEN---ALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPIQRCRFWGKILGLEMNYIVAEVEFREGEDEEEVEEE--DVAEERDNGESEAHEDEEDELPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVESLSN-WVHHVQHILSQGRCNWFNSIQKN----EEEEEEEDEEKDDSDYIEQEVGLPLLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGAYAFSNGKKFENFYIGWGHKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSV 683
The following BLAST results are available for this feature:
BLAST of TCONS_00054297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSH4A5.598e-12150.92Radial spoke head protein 4 homolog A OS=Homo sapi... [more]
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