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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054303 ID=TCONS_00054303|Name=TCONS_00054303|organism=Clytia hemisphaerica|type=transcript|length=3098bpRun BLAST on NCBI protein sequence of TCONS_00054303-protein >TCONS_00054303-protein ID=TCONS_00054303-protein|Name=TCONS_00054303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp MMEVANKQKEDDPSNSIEDYICNAKTFLLRSDGKSGVTMYDHLVSILSKMRun BLAST on NCBI transcript from alignment at scaffold_242:2277..17000- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054303 ID=TCONS_00054303|Name=TCONS_00054303|organism=Clytia hemisphaerica|type=transcript|length=14724bp|location=Sequence derived from alignment at scaffold_242:2277..17000- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_242:2277..17000- >TCONS_00054303 ID=TCONS_00054303|Name=TCONS_00054303|organism=Clytia hemisphaerica|type=CDS|length=20748bp|location=Sequence derived from alignment at scaffold_242:2277..17000- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00054303 vs. Swiss-Prot (Human)
Match: RSH4A (Radial spoke head protein 4 homolog A OS=Homo sapiens GN=RSPH4A PE=1 SV=1) HSP 1 Score: 390.578 bits (1002), Expect = 5.070e-121 Identity = 248/487 (50.92%), Postives = 334/487 (68.58%), Query Frame = 3
Query: 171 IEDYICNAKTFLLRSDGKSGVTMYDHLVSILSKMIEKEPENAAELLKEFSRKEHKARFIPEKDTIEERIETTNKVNLANDQKNLFNRKDIEVPNTVGDNEAEEEERLILADVMENAFYFEQAGIGLGREEVFRVFLALKQLTDCYQLKSCRFWGKILGSQANYIIAEVEFRDGEDPHKENEDPDNLSSSRISEANEPIEDEVDDIPKPDYKPPVTIPQEDYGEGCNSKIYYVCNDAGLSWHRLPPVTPQQIHVARQIKKFCTGDLEAPIISYPPFPGTEIHYLRAMIARISAATHISPQGYYIF--XXXXXXXXXXTARKTFIPNIEFEGIPVSDLCDATNTFWVHHNPYILPQGRTTWFNPLQKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLEINSQTAWTANKSTGLVSQYAIAVMHSNLWPGAHAFAVDKKFDNIYIGYGLKYSSENYSXXXXXXXQEEYPSGPEVTEAEDPTV 1625
+E I NAK +LL++ SG +YDHL ++L+K++ + PENA ++ + S+ A F + D ++ E +A QK LF + +E + ++E E L +VME+AFYFEQAG+GLG +E +R+FLALKQLTD + ++ CRFWGKILG + NYI+AEVEFR+GED + E+ +++ R + +E EDE D++PK YK P IP+E+ G N +Y+VCN+ G W +LPPV P QI +AR+IKKF TG L+APIISYPPFPG E +YLRA IARISA TH+SP G+Y F EE E+EE E R +F N +FEGI V DL ++ + WVHH +IL QGR WFN +QKN EEEE+E+E++++ D IE E G PLLTP+SEDLEI + WT S+ L+ QYAIAV+ SNLWPGA+AF+ KKF+N YIG+G KYS +NY+PP PP +EYPSGPE+TE +DP+V
Sbjct: 207 LEITIQNAKAYLLKTSSNSGFNLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKALFLQGHLEGVDQELEDEIAEN---ALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPIQRCRFWGKILGLEMNYIVAEVEFREGEDEEEVEEE--DVAEERDNGESEAHEDEEDELPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVESLSN-WVHHVQHILSQGRCNWFNSIQKN----EEEEEEEDEEKDDSDYIEQEVGLPLLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGAYAFSNGKKFENFYIGWGHKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSV 683 The following BLAST results are available for this feature:
BLAST of TCONS_00054303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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