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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054305 ID=TCONS_00054305|Name=TCONS_00054305|organism=Clytia hemisphaerica|type=transcript|length=2034bp
GCAGACTTAATAAAGAGGGCAGCATCGGAttacaaaaatctaaataatta
ttttcaattagaTAAACTGACTACGATAAATACACCTTTTCCACCgcagc
cgccaattgccgcgcgggcattttttagtccgctttatcccacttaaacc
gtcccagtccttttttcgcaacTAATAGGCCATagaaaaaagtgtcaaaa
aaggatttggTACtctagggggataattaaataattaagtggcacgcgcc
tgaccggtCGAAAAGTGTATTCAAATATTACAACAATGTTCATTTGTTCC
AAAAAGAATGCAGCGTGTTCTTGCTCTTTTTCGACtcttttttcttcaat
tgtTCATTCGATTTCCTTTTTCCTGATGAAACAGTACTTTTCGCTGGTGA
CGATTTCTGAGTTTTTGCCTCGATTAAATCTTGCTCTTTTACTATTTCTT
TGATAGTTTGTTTGGTTAAGCAAGCATCAATGTGTGAATTTAAGGCATCT
AAATTAGCATTAGATTGCAGGGCTCCACATACAGGACAGGGTACAAGTTT
ATCATCTGCTTTAGTAGATGGTCCTGCACAAGCACCACCCAGCTTTACAG
GAGAAATTTCTGAATATTTAGCAGTAAAAAAGTCTTCCACGACATTTTGC
TTCAAACTTGAAGATTgttttttatcataaaaatgCGCACCGCGGACACC
CATTAACCTGAGTTCGAATTTCTTCCCTTCTTTTTGAAACTCTTGAATTT
CATGCAGCAAAATCTCTTTAGAGAATCGAAAAAGTTCCTCTGCTTTGCAA
ATAGAATAAGGAATACTTTTTGATCGAGTCTTTGTTACAAAGGAAGATAG
TTTATACTTTAAAGTGATATTACGTATCTGTAATGATTCCTTCTTTAAGT
CGTTAGCCAGTTCTTGGCAAAGTGAATTACAAATTTTCAGTAGTTGGTCT
TTATTCTGCTGATTGTGAAAGGTGCGCTCCACACTCATACTTTTACGATC
GTCATGCATAATCCGATTGCCTGAGATTCCTAACGCAACTCTCATGAAGT
AAGCAAAAGTCGTTGTAGAGAATAACAAATACAAAATATCTCTTTGTGCC
AACAAGTCCTTTACAAGAGTAACTCCAAGAGCTTGTAACATCTGTTCAGT
AACTCGACCAATACCAAATACTTTACGTATAGGTAAATCCTGTATGAAAT
TCACAACCATCTCTTTGTTCGGCTGCAAATAATATTGTCCATTTGGCTTA
TTGAAATCAGAACAGATTTTTGACAACATCAAATTAGGTGCTATACCAGC
ACTAGCAGTCAGTTGTGTTTTATCGTGAATTCTGGTACGTATTTCTTCTA
CTACAATCTCGGCAAGGCATCTGGTATCATTTTCATCCACTTTAAGAGTC
AATTCCTCACAATTAGATACCAGATACTCAGTCAAGTCTAGATAAGCTTC
ATCAAGACTCATGGGTGAAAAATTTGGATCATATTCTTTGAAAATCTCAC
GAATCTCAGCACTCACTGCACGATATTTATCAAAATGAGATGATACAATG
ACAAGATTTGGACACAGCTTTTTGGCAATGAAACCAGGCATGGCTGCACG
GACACCGAACTTCCTTGCAAGGTAGTTGGAAGTAGACAACATATCATTCC
CACCTACCGCCATTGGGACATCCTTCAGTTTCGGGTCATCTCTCATCTCA
ACTGCAGCGTAGAAAGCATCCATATCAACATGGCAGATCGTGCGAGTAAA
ATCAAACTCATCATCTAGTTCCTTTAATAATTTATCACTTTCGACAATGG
CTTTCTTTTTATCGGTTTCCGTAAACTTAGAAAGATCACGTTTCATTTCA
CAAACACGCTCTTGTACACGTTCATCCTTACGTTTCTCATTCTCATAAAA
TTTTGATCCTTTACTTGCTTCGTGaatgattttgttgattttttctttat
caagACCTTGCATTCCAGCTTTTCCATCATTTAATGACATTCGTTGTATG
ATGACATCTGTATTTGTCTCCTTGGATGAAGATG Run BLAST on NCBI transcript from alignment at scaffold_242:26753..28840- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054305 ID=TCONS_00054305|Name=TCONS_00054305|organism=Clytia hemisphaerica|type=transcript|length=2088bp|location=Sequence derived from alignment at scaffold_242:26753..28840- (Clytia hemisphaerica)
GCAGACTTAATAAAGAGGGCAGCATCGGATTACAAAAATCTAAATAATTA
TTTTCAATTAGATAAACTGACTACGATAAATACACCTTTTCCACCGCAGC
CGCCAATTGCCGCGCGGGCATTTTTTAGTCCGCTTTATCCCACTTAAACC
GTCCCAGTCCTTTTTTCGCAACTAATAGGCCATAGAAAAAAGTGTCAAAA
AAGGATTTGGTACTCTAGGGGGATAATTAAATAATTAAGTGGCACGCGCC
TGACCGGTCGAAAAGTGTATTCAAATATTACAACAATGTTCATTTGTTCC
AAAAAGAATGCAGCGTGTTCTTGCTCTTTTTCGACTCTTTTTTCTTCAAT
TGTTCATTCGATTTCCTTTTTCCTGATGAAACAGTACTTTTCGCTGGTGA
CGATTTCTGAGTTTTTGCCTCGATTAAATCTTGCTCTTTTACTATTTCTT
TGATAGTTTGTTTGGTTAAGCAAGCATCAATGTGTGAATTTAAGGCATCT
AAATTAGCATTAGATTGCAGGGCTCCACATACAGGACAGGGTACAAGTTT
ATCATCTGCTTTAGTAGATGGTCCTGCACAAGCACCACCCAGCTTTACAG
GAGAAATTTCTGAATATTTAGCAGTAAAAAAGTCTTCCACGACATTTTGC
TTCAAACTTGAAGATTGTTTTTTATCATAAAAATGCGCACCGCGGACACC
CATTAACCTGAGTTCGAATTTCTTCCCTTCTTTTTGAAACTCTTGAATTT
CATGCAGCAAAATCTCTTTAGAGAATCGAAAAAGTTCCTCTGCTTTGCAA
ATAGAATAAGGAATACTTTTTGATCGAGTCTTTGTTACAAAGGAAGATAG
TTTATACTTTAAAGTGATATTACGTATCTGTAATGATTCCTTCTTTAAGT
CGTTAGCCAGTTCTTGGCAAAGTGAATTACAAATTTTCAGTAGTTGGTCT
TTATTCTGCTGATTGTGAAAGGTGCGCTCCACACTCATACTTTTACGATC
GTCATGCATAATCCGATTGCCTGAGATTCCTAACGCAACTCTCATGAAGT
AAGCAAAAGTCGTTGTAGAGAATAACAAATACAAAATATCTCTTTGTGCC
AACAAGTCCTTTACAAGAGTAACTCCAAGAGCTTGTAACATCTGTTCAGT
AACTCGACCAATACCAAATACTTTACGTATAGGTAAATCCTGTATGAAAT
TCACAACCATCTCTTTGTTCGGCTGCAAATAATATTGTCCATTTGGCTTA
TTGAAATCAGAACAGATTTTTGACAACATCAAATTAGGTGCTATACCAGC
ACTAGCAGTCAATTGCNAGATTTTTGACAACATCAAATTAGGTGCTATAC
CAGCACTAGCAGTCAGTTGTGTTTTATCGTGAATTCTGGTACGTATTTCT
TCTACTACAATCTCGGCAAGGCATCTGGTATCATTTTCATCCACTTTAAG
AGTCAATTCCTCACAATTAGATACCAGATACTCAGTCAAGTCTAGATAAG
CTTCATCAAGACTCATGGGTGAAAAATTTGGATCATATTCTTTGAAAATC
TCACGAATCTCAGCACTCACTGCACGATATTTATCAAAATGAGATGATAC
AATGACAAGATTTGGACACAGCTTTTTGGCAATGAAACCAGGCATGGCTG
CACGGACACCGAACTTCCTTGCAAGGTAGTTGGAAGTAGACAACATATCA
TTCCCACCTACCGCCATTGGGACATCCTTCAGTTTCGGGTCATCTCTCAT
CTCAACTGCAGCGTAGAAAGCATCCATATCAACATGGCAGATCGTGCGAG
TAAAATCAAACTCATCATCTAGTTCCTTTAATAATTTATCACTTTCGACA
ATGGCTTTCTTTTTATCGGTTTCCGTAAACTTAGAAAGATCACGTTTCAT
TTCACAAACACGCTCTTGTACACGTTCATCCTTACGTTTCTCATTCTCAT
AAAATTTTGATCCTTTACTTGCTTCGTGAATGATTTTGTTGATTTTTTCT
TTATCAAGACCTTGCATTCCAGCTTTTCCATCATTTAATGACATTCGTTG
TATGATGACATCTGTATTTGTCTCCTTGGATGAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054305-exon-scaffold_242-1575043694:27554..28840 | TCONS_00054305-exon-scaffold_242-1575043694:27554..28840 | Clytia hemisphaerica | exon |
| TCONS_00054305-exon-scaffold_242-1575043694:26753..27499 | TCONS_00054305-exon-scaffold_242-1575043694:26753..27499 | Clytia hemisphaerica | exon |
| TCONS_00054305-exon-scaffold_242-1510915933:27554..28840 | TCONS_00054305-exon-scaffold_242-1510915933:27554..28840 | Clytia hemisphaerica | exon |
| TCONS_00054305-exon-scaffold_242-1510915933:26753..27499 | TCONS_00054305-exon-scaffold_242-1510915933:26753..27499 | Clytia hemisphaerica | exon |
| TCONS_00054305-exon-scaffold_242-1491911889:27554..28840 | TCONS_00054305-exon-scaffold_242-1491911889:27554..28840 | Clytia hemisphaerica | exon |
| TCONS_00054305-exon-scaffold_242-1491911889:26753..27499 | TCONS_00054305-exon-scaffold_242-1491911889:26753..27499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:26753..28840 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003684 | damaged DNA binding |
| GO:0003887 | DNA-directed DNA polymerase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| molecular_function |
GO:0003684 |
damaged DNA binding |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003887 |
DNA-directed DNA polymerase activity |
Blast
BLAST of TCONS_00054305 vs. Swiss-Prot (Human)
Match: POLK (DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1) HSP 1 Score: 380.563 bits (976), Expect = 2.779e-119 Identity = 219/521 (42.03%), Postives = 315/521 (60.46%), Query Frame = -3
Query: 638 DVIIQRMSLNDGKAGMQGLDKEKINKIIHEASKGSKFYENEKRKDERVQERVCEMKRDLSKFTETDKKKAIVESXXXXXXXXXXXXFTRTICHVDMDAFYAAVEMRDDPKLKDVPMAVGGNDMLSTSNYLARKFGVRAAMPGFIAKKLCPNLVI-------------------------------------VSSHFDKYRAVSAEIREIF-------------------KEYDPNFSPMSLDEAYLDLTE----YLVSNCEELTLKVDENDT--RCLAEIVVEEIRTRIHDKTQLTASAGIAPNLMLSKICSDFNKPNGQYYLQPNKEMVVNFIQDLPIRKVFGIGRVTEQMLQALGVTLVKDLLAQRDILYLLFSTTTFAYFMRVALGISGNRIMHD-DRKSMSVERTFHNQQNKDQLLKICNSLCQELANDLKKESLQIRNITLKYKLSSFVTKTRSKSIPYSICKAEELFRFSKEILLHEIQ-EFQKEGKKFELRLMGVRGAHFYDKKQSSSLKQNVV 2008
D ++ RM LND KAGM+GLDKEKINKII EA+KGS+FY NE +K+++V +R+ M + ++ T +KA ++ D+ EL+ + + TI H+DMDAFYAAVEMRD+P+LKD P+AVG MLSTSNY AR+FGVRAAMPGFIAK+LCP L+I ++ H ++ + + R F E++ + SP+ +E+ D+ + V+ E+ ++ +N A+ VV+EIR RI KT LTASAGIAPN ML+K+CSD NKPNGQY + PN++ V++FI+DLPIRKV GIG+VTE+ML+ALG+ +L QR +L LLFS T++ YF+ ++LG+ + D +RKSMSVERTF ++ +C LC ELA DL+KE L+ R +T+K K +F KTR+ ++ + AEE+F +KE+L EI +F LRLMGVR + F +++ +++++
Sbjct: 13 DDLLLRMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADF---PHPLRLRLMGVRISSFPNEEDRKHQQRSII 530
The following BLAST results are available for this feature:
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