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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054306 ID=TCONS_00054306|Name=TCONS_00054306|organism=Clytia hemisphaerica|type=transcript|length=718bp
TACAGAGCAAATTGGCGTACTGTTAACACCATATCACACAATGATGTTCA
AGATTCTCTTGCTGACTGCAGCAGTAGCTGTACAATCAAGCAGTGCATAC
TATAAAGATCCTCTATTGGAAGATTTTCATCCATCGGAATTTGAAGAGGA
AGATTTCTCACAAGAAGATATGACGAGCGATACAAGTCCACACGAGTTTT
GTTATCCCAGAGTGATGTGCCCTAGAAGAACAACAGACATTGATGGTGTC
AAAACTCACACATGCAAAATATGTCTTCGAAAGTATAATGCTGCTCGTGG
ATCGTGTAGAATCTATCACTGTTTTGATTACTCAATCAAGCAAGATGCGT
CTATGCGAACATATTTGGAGAGTTTGACACGGAAATAGGACGGAGTATCA
TCTCCCATACGATTATTTTTAACAGATACAGTTCTATAACAAATTTTATG
ATGTTTTGATCAAAGATACCAAGGAATAATATTTTACGACGTATATGTAT
ATCACCAATATCACGAAAAATTTATGTCACAGTTTAATATACTTACTATT
GATATTTTGttcatttcatttctttatttttaatattctattatttttat
ttcaatatttctaGATTCCCTGAAAGAAAAACGACGAAGAAAATTATAAT
TCTTACTTTTTATCTAAAAGGGTTATGATTTGTTACTACGAGAAGAAAAG
GTGATCTGGGGAGTCCTA Run BLAST on NCBI protein sequence of TCONS_00054306-protein >TCONS_00054306-protein ID=TCONS_00054306-protein|Name=TCONS_00054306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
TEQIGVLLTPYHTMMFKILLLTAAVAVQSSSAYYKDPLLEDFHPSEFEEE
DFSQEDMTSDTSPHEFCYPRVMCPRRTTDIDGVKTHTCKICLRKYNAARG
SCRIYHCFDYSIKQDASMRTYLESLTRK Run BLAST on NCBI transcript from alignment at scaffold_242:29591..31219- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054306 ID=TCONS_00054306|Name=TCONS_00054306|organism=Clytia hemisphaerica|type=transcript|length=1629bp|location=Sequence derived from alignment at scaffold_242:29591..31219- (Clytia hemisphaerica)
TACAGAGCAAATTGGCGTACTGTTAACACCATATCACACAATGATGTTCA
AGATTCTCTTGCTGACTGCAGCAGTAGCTGTACAATCAAGCAGTAAGTAT
TTCTAATTATTACACCAGAGTATACGAAAATATAATTCTAGTAGGAGACA
CTGTATATAAACTGATAATCTGCTTTTTAAAAGCTAACTATGTGACAAAA
GGTTTTTCATCGTATTTTTATAGTTGACCTAAAGACCCTTACAAGGTTCA
GACAGATATCAAGAAACTATTTGGAATAAAATATGGCTAACTTTCCCTGA
AAAATTTGGGTCTGCCTGAGCACTGCTTCATCGTATGATTCCAAATCAAA
CTCTTTAACCCCCCCTCCCCCTCTTAAGCGCATGTTTATAACTTTTGTTA
TTTTCCTTGTGCGTTTATTAACTATGGCCTAAATTTTGAATCAACCTTAT
GGATTTATACAAAGCTCAAAGAATTCTTGCGCTTTTTTATCAATTAAATA
TTCCACTACACAATTTCCATATTTCACAATGAAGATTGTTAGGCTTACCT
GCTGATGTGTATTATGTGTGTGTTCCAATAGCCGACCTGAAGAAATGTCC
ATTGTAGTAAATTCTGAATAGGATCAAAAATGAAAAATATAATTTTATCT
TCATTCATTTATTCATTCATTAGGTGCATACTATAAAGATCCTCTATTGG
AAGATTTTCATCCATCGGAATTTGAAGAGGAAGATTTCTCACAAGAAGAT
ATGACGAGCGGTGAGATGGGAGAATAAATTAAACTTCATATTTTCGTGTT
TTTTTTCTTAATGTCAGGCGATACAGAACACAGTGCGCGTCGACTTCACG
GCCTTTTTTATACAGTAACACCTATAGTCCCGCTTGCAACTTTTTCGAAT
GTTTGAAGGCTTGGTTTTCAATTCTTTGACGTCACTTTTTAAACTTTCGA
AGCTCCTGCAATAGCGAAAAAACTGATTTTTTGGCGAGGTACTGGCTATA
TCTCACCCTCTTAATGCCCTGATATTAACTCACCTTTTACTAACTTGCAT
TTCTTTAAAGAAAGATAATTCTTCATCTGTTATTATTTAGATACAAGTCC
ACACGAGTTTTGTTATCCCAGAGTGATGTGCCCTAGAAGAACAACAGACA
TTGATGGTGTCAAAACTCACACATGCAAAATATGTCTTCGAAAGTATAAT
GCTGCTCGTGGATCGTGTAGAATCTATCACTGTTTTGATTACTCAATCAA
GCAAGATGCGTCTATGCGAACATATTTGGAGAGTTTGACACGGAAATAGG
ACGGAGTATCATCTCCCATACGATTATTTTTAACAGATACAGTTCTATAA
CAAATTTTATGATGTTTTGATCAAAGATACCAAGGAATAATATTTTACGA
CGTATATGTATATCACCAATATCACGAAAAATTTATGTCACAGTTTAATA
TACTTACTATTGATATTTTGTTCATTTCATTTCTTTATTTTTAATATTCT
ATTATTTTTATTTCAATATTTCTAGATTCCCTGAAAGAAAAACGACGAAG
AAAATTATAATTCTTACTTTTTATCTAAAAGGGTTATGATTTGTTACTAC
GAGAAGAAAAGGTGATCTGGGGAGTCCTA Coding sequence (CDS) from alignment at scaffold_242:29591..31219- >TCONS_00054306 ID=TCONS_00054306|Name=TCONS_00054306|organism=Clytia hemisphaerica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_242:29591..31219- (Clytia hemisphaerica)
ATACAAGTCCACACGAGTTTTGTTATCCCAGAGTGATGTGCCCTAGAAGA
ACAACAGACATTGATGGTGTCAAAACTCACACATGCAAAATATGTCTTCG
AAAGTATAATGCTGCTCGTGGATCGTGTAGAATCTATCACTGTTTTGATT
ACTCAATCAAGCAAGATGCGTCTATGCGAACATATTTGGAGAGTTTGACA
CGGAAATAGGTGCATACTATAAAGATCCTCTATTGGAAGATTTTCATCCA
TCGGAATTTGAAGAGGAAGATTTCTCACAAGAAGATATGACGAGCGACAG
AGCAAATTGGCGTACTGTTAACACCATATCACACAATGATGTTCAAGATT
CTCTTGCTGACTGCAGCAGTAGCTGTACAATCAAGCAATACAAGTCCACA
CGAGTTTTGTTATCCCAGAGTGATGTGCCCTAGAAGAACAACAGACATTG
ATGGTGTCAAAACTCACACATGCAAAATATGTCTTCGAAAGTATAATGCT
GCTCGTGGATCGTGTAGAATCTATCACTGTTTTGATTACTCAATCAAGCA
AGATGCGTCTATGCGAACATATTTGGAGAGTTTGACACGGAAATAGGTGC
ATACTATAAAGATCCTCTATTGGAAGATTTTCATCCATCGGAATTTGAAG
AGGAAGATTTCTCACAAGAAGATATGACGAGCGACAGAGCAAATTGGCGT
ACTGTTAACACCATATCACACAATGATGTTCAAGATTCTCTTGCTGACTG
CAGCAGTAGCTGTACAATCAAGCAATACAAGTCCACACGAGTTTTGTTAT
CCCAGAGTGATGTGCCCTAGAAGAACAACAGACATTGATGGTGTCAAAAC
TCACACATGCAAAATATGTCTTCGAAAGTATAATGCTGCTCGTGGATCGT
GTAGAATCTATCACTGTTTTGATTACTCAATCAAGCAAGATGCGTCTATG
CGAACATATTTGGAGAGTTTGACACGGAAATAGGTGCATACTATAAAGAT
CCTCTATTGGAAGATTTTCATCCATCGGAATTTGAAGAGGAAGATTTCTC
ACAAGAAGATATGACGAGCGACAGAGCAAATTGGCGTACTGTTAACACCA
TATCACACAATGATGTTCAAGATTCTCTTGCTGACTGCAGCAGTAGCTGT
ACAATCAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054306-exon-scaffold_242-1575043694:31128..31219 | TCONS_00054306-exon-scaffold_242-1575043694:31128..31219 | Clytia hemisphaerica | exon |
| TCONS_00054306-exon-scaffold_242-1575043694:30460..30546 | TCONS_00054306-exon-scaffold_242-1575043694:30460..30546 | Clytia hemisphaerica | exon |
| TCONS_00054306-exon-scaffold_242-1575043694:29591..30129 | TCONS_00054306-exon-scaffold_242-1575043694:29591..30129 | Clytia hemisphaerica | exon |
| TCONS_00054306-exon-scaffold_242-1510915933:31128..31219 | TCONS_00054306-exon-scaffold_242-1510915933:31128..31219 | Clytia hemisphaerica | exon |
| TCONS_00054306-exon-scaffold_242-1510915933:30460..30546 | TCONS_00054306-exon-scaffold_242-1510915933:30460..30546 | Clytia hemisphaerica | exon |
| TCONS_00054306-exon-scaffold_242-1510915933:29591..30129 | TCONS_00054306-exon-scaffold_242-1510915933:29591..30129 | Clytia hemisphaerica | exon |
| TCONS_00054306-exon-scaffold_242-1491911889:31128..31219 | TCONS_00054306-exon-scaffold_242-1491911889:31128..31219 | Clytia hemisphaerica | exon |
| TCONS_00054306-exon-scaffold_242-1491911889:30460..30546 | TCONS_00054306-exon-scaffold_242-1491911889:30460..30546 | Clytia hemisphaerica | exon |
| TCONS_00054306-exon-scaffold_242-1491911889:29591..30129 | TCONS_00054306-exon-scaffold_242-1491911889:29591..30129 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:29591..31219 - |
Blast
The following BLAST results are available for this feature:
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