TCONS_00054307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054307
Unique NameTCONS_00054307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054307 ID=TCONS_00054307|Name=TCONS_00054307|organism=Clytia hemisphaerica|type=transcript|length=853bp
AAAATTGCCTTGGAGATGTTTGAAAACTCAACGGTAACgttgaaatcaaa
gatgaatgGTTAAGACAAGAAAATTGGTagtgaaaagtaaataaaaaaat
aagaaaataagctGTTTAACGAACGAACGTGTTATTACAGAGCAAATTGG
CGTACTGTTAACACCATATCACACAATGATGTTCAAGATTCTCTTGCTGA
CTGCAGCAGTAGCTGTACAATCAAGCAGTGCATACTATAAAGATCCTCTA
TTGGAAGATTTTCATCCATCGGAATTTGAAGAGGAAGATTTCTCACAAGA
AGATATGACGAGCGATACAAGTCCACACGAGTTTTGTTATCCCAGAGTGA
TGTGCCCTAGAAGAACAACAGACATTGATGGTGTCAAAACTCACACATGC
AAAATATGTCTTCGAAAGTATAATGCTGCTCGTGGATCGTGTAGAATCTA
TCACTGTTTTGATTACTCAATCAAGCAAGATGCGTCTATGCGAACATATT
TGGAGAGTTTGACACGGAAATAGGACGGAGTATCATCTCCCATACGATTA
TTTTTAACAGATACAGTTCTATAACAAATTTTATGATGTTTTGATCAAAG
ATACCAAGGAATAATATTTTACGACGTATATGTATATCACCAATATCACG
AAAAATTTATGTCACAGTTTAATATACTTACTATTGATATTTTGttcatt
tcatttctttatttttaatattctattatttttatttcaatatttctaGA
TTCCCTGAAAGAAAAACGACGAAGAAAATTATAATTCTTACTTTTTATCT
AAAAGGGTTATGATTTGTTACTACGAGAAGAAAAGGTGATCTGGGGAGTC
CTA
Run BLAST on NCBI

transcript from alignment at scaffold_242:29591..32573-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054307 ID=TCONS_00054307|Name=TCONS_00054307|organism=Clytia hemisphaerica|type=transcript|length=2983bp|location=Sequence derived from alignment at scaffold_242:29591..32573- (Clytia hemisphaerica)
AAAATTGCCTTGGAGATGTTTGAAAACTCAACGGTAACGTTGAAATCAAA
GATGAATGGTTAAGACAAGAAAATTGGTAGTGAAAAGTAAATAAAAAAAT
AAGAAAATAAGCTGTTTAACGAACGAACGTGTTATTACAGAGCAAATTGG
CGTACTGTTAACACCATATCACACAATGATGTTCAAGATTCTCTTGCTGA
CTGCAGCAGTAGCTGTACAATCAAGCAGTAAGTATTTCTAATTATTACAC
CAGAGTATACAAAAATATAGATCTAGTAGGAGACACTGTATATAAACTGA
TAATCTGCTTTTTAAAAGCTAACTATATGACAAAAGGTTTTTCATCGTAT
TTTTATAGTTGACCTAAAGACCCTTACAAGGTTCAGACAGATATCAAAAA
ACTATTTGGAATAAAATATGGCTAACTTTTCCTGAAAAATTTGGGTCTGC
CTGAGCACTGCTTCATCGTATGATTCCAAATCAAACTCTTTAACCCCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCCGTCGGCCGTCAAGGTCAGGGGTGCCCCCCCCCCCGGGACTCAG
CTTCTCCAAGATTTTGAGAACCGTGACAGAACGAACTATACAAGCTATGA
TCCAAAATTGGTAAAGACAAGAATGGGCTGTTGCAACTCTGAAGACGTTT
AAATGAACAATAGAGAGAAATGATTGCATTACTTTTTTCTCAGAACCTTG
ACAAATAATAAGCCTACACAAAAAATTAAAAAGAATATTTCGAAATCAAA
ATAATATGAGGTGGCGTACGGGACTTCGTTATACTGATATACCAATCACT
TTTTAACCCAATTACCGATATACCGATAACTTTTTCGCTCAAATATCGAT
ACCGAACGATTATTTTGTACCAACATTAATGTAGATTTTCTAGATTCCCC
TTTCTTATTGAAAATTTCAATATTTTGTACCAACATTCAAATGGAGATTT
TCTAGAGTCTTGTACATCTGTTTAATGTATCTTTTAAAAATTTCATTGAT
GAAATACCGATTTACCGATCTAATAAAAGGCCAATACCGATGTACCGATA
TCACGTACGTCCCCCCAATAATATCTTTCCTTTCTTAGTGTTGCGACCAA
ATAATAAATAGAACAAATAAAATTGCCTTGGAGATGTTTGAAAACTCAAC
GGTAACGTTGAAATCAAAGATGAATGGTTAAGACAAGAAAATTGGTAGTG
AAAAGTAAATAAAAAAATGAAAAAAATAAGCTGTTTAACGAACGAACGTG
TTATTACAGAGCAAATTGGCGTACTGTTAACACCATATCACACAATGATG
TTCAAGATTCTCTTGCTGACTGCAGCAGTAGCTGTACAATCAAGCAGTAA
GTATTTCTAATTATTACACCAGAGTATACGAAAATATAATTCTAGTAGGA
GACACTGTATATAAACTGATAATCTGCTTTTTAAAAGCTAACTATGTGAC
AAAAGGTTTTTCATCGTATTTTTATAGTTGACCTAAAGACCCTTACAAGG
TTCAGACAGATATCAAGAAACTATTTGGAATAAAATATGGCTAACTTTCC
CTGAAAAATTTGGGTCTGCCTGAGCACTGCTTCATCGTATGATTCCAAAT
CAAACTCTTTAACCCCCCCTCCCCCTCTTAAGCGCATGTTTATAACTTTT
GTTATTTTCCTTGTGCGTTTATTAACTATGGCCTAAATTTTGAATCAACC
TTATGGATTTATACAAAGCTCAAAGAATTCTTGCGCTTTTTTATCAATTA
AATATTCCACTACACAATTTCCATATTTCACAATGAAGATTGTTAGGCTT
ACCTGCTGATGTGTATTATGTGTGTGTTCCAATAGCCGACCTGAAGAAAT
GTCCATTGTAGTAAATTCTGAATAGGATCAAAAATGAAAAATATAATTTT
ATCTTCATTCATTTATTCATTCATTAGGTGCATACTATAAAGATCCTCTA
TTGGAAGATTTTCATCCATCGGAATTTGAAGAGGAAGATTTCTCACAAGA
AGATATGACGAGCGGTGAGATGGGAGAATAAATTAAACTTCATATTTTCG
TGTTTTTTTTCTTAATGTCAGGCGATACAGAACACAGTGCGCGTCGACTT
CACGGCCTTTTTTATACAGTAACACCTATAGTCCCGCTTGCAACTTTTTC
GAATGTTTGAAGGCTTGGTTTTCAATTCTTTGACGTCACTTTTTAAACTT
TCGAAGCTCCTGCAATAGCGAAAAAACTGATTTTTTGGCGAGGTACTGGC
TATATCTCACCCTCTTAATGCCCTGATATTAACTCACCTTTTACTAACTT
GCATTTCTTTAAAGAAAGATAATTCTTCATCTGTTATTATTTAGATACAA
GTCCACACGAGTTTTGTTATCCCAGAGTGATGTGCCCTAGAAGAACAACA
GACATTGATGGTGTCAAAACTCACACATGCAAAATATGTCTTCGAAAGTA
TAATGCTGCTCGTGGATCGTGTAGAATCTATCACTGTTTTGATTACTCAA
TCAAGCAAGATGCGTCTATGCGAACATATTTGGAGAGTTTGACACGGAAA
TAGGACGGAGTATCATCTCCCATACGATTATTTTTAACAGATACAGTTCT
ATAACAAATTTTATGATGTTTTGATCAAAGATACCAAGGAATAATATTTT
ACGACGTATATGTATATCACCAATATCACGAAAAATTTATGTCACAGTTT
AATATACTTACTATTGATATTTTGTTCATTTCATTTCTTTATTTTTAATA
TTCTATTATTTTTATTTCAATATTTCTAGATTCCCTGAAAGAAAAACGAC
GAAGAAAATTATAATTCTTACTTTTTATCTAAAAGGGTTATGATTTGTTA
CTACGAGAAGAAAAGGTGATCTGGGGAGTCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034246XLOC_034246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054307-exon-scaffold_242-1575043694:32347..32573TCONS_00054307-exon-scaffold_242-1575043694:32347..32573Clytia hemisphaericaexon
TCONS_00054307-exon-scaffold_242-1575043694:30460..30546TCONS_00054307-exon-scaffold_242-1575043694:30460..30546Clytia hemisphaericaexon
TCONS_00054307-exon-scaffold_242-1575043694:29591..30129TCONS_00054307-exon-scaffold_242-1575043694:29591..30129Clytia hemisphaericaexon
TCONS_00054307-exon-scaffold_242-1510915933:32347..32573TCONS_00054307-exon-scaffold_242-1510915933:32347..32573Clytia hemisphaericaexon
TCONS_00054307-exon-scaffold_242-1510915933:30460..30546TCONS_00054307-exon-scaffold_242-1510915933:30460..30546Clytia hemisphaericaexon
TCONS_00054307-exon-scaffold_242-1510915933:29591..30129TCONS_00054307-exon-scaffold_242-1510915933:29591..30129Clytia hemisphaericaexon
TCONS_00054307-exon-scaffold_242-1491911889:32347..32573TCONS_00054307-exon-scaffold_242-1491911889:32347..32573Clytia hemisphaericaexon
TCONS_00054307-exon-scaffold_242-1491911889:30460..30546TCONS_00054307-exon-scaffold_242-1491911889:30460..30546Clytia hemisphaericaexon
TCONS_00054307-exon-scaffold_242-1491911889:29591..30129TCONS_00054307-exon-scaffold_242-1491911889:29591..30129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:29591..32573 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.297553	0	0.222874	0.117412	1.01361	2.21416	7.75092	3.01738	4.25999	17.8523	6.29204	6.71585	7.90895	5.12454	1.77553	2.02207	3.07296	6.13894	0.254088	0	0	0	0.236589	0	0.360348	0.384573	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top