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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054311 ID=TCONS_00054311|Name=TCONS_00054311|organism=Clytia hemisphaerica|type=transcript|length=2159bp
TTCAGAGATTATCAGAGATTATTGCAAAAGTAATTGAATTTAGAGAATAA
GGCttgcaaaaacaaaaagaaattgctGGAAATTGTGTGTTGTGTTATAG
TTTAGCTGAGCGAAAAAAATGGATAATACTGTGAGAAATTAATAgaacat
aaatattaaaatacATATATTGAAATGCTTTTGCTAGGAAATAGgttaat
taaaattaaatagAAAATATAGGTAGATGGGATTCTGGCTTAAATTCTAG
TTACTTGGGTATTATAGTTAGATGAGTTGAGTGAAGTAAGAGCTTGGAGC
TTAGAGCGAAAAAGAGGTCCTAGGTGTGAAGTTAATCAAGAGGGGGATAT
CCTAAGTATGATGATAatcaataataaataaaatctagGTCACGTGCATC
TCCAACGGTGCCAAATTTTATGCGATCTAAAATATCCGATTTTTTAAGAG
CATCTTTAAATGAGTCATATGAATCACATGCTTTAAGTTTTGGTGTCAGA
TTGTTCAAAATTGACACAACTCGAACACGAAATGATCTCTTATAATCAAC
ATATTTTGATGGTGGTACGTGAAGACGCCAGTCATTtcgattcttctttt
tttagtcACATCTGTCAATCAAGTTAAGAAGCAGTGGTGAATACTGTGCT
TTATATATAAAGTTtagtagtgtcgactgcgcacgcatccaaacaatttt
ccatagttttgattttagcgatcgCTCTCTCTCGTAAAAAAAAGGTAGGT
AAAATTCCAGTTCTTGTAAGGAAACCTAGcagtaggtaaagaactccttt
taatcataacttcttttcctcttgatgcaatttttgtgaaattttcagga
gagatccataaaattatcattgatatcattttcaaatatctaaatcattc
tctttaaagaaaaggaaacaaaatgaaatgtttacattcctctaaccttc
cacagtactaaagtgcatATTTTTAACCTACCGTTTTTACAGTGGAACAC
GGTggagatagcgagactcctaaatgGTGTATTAATCTATTGATCTCTCT
TATAACCAATGTCCAAAAATGTCATAAATAACATAAATAACATGCCAATA
ACTGGGAAGCCTTGGGCGTGGATAGATTTCATAAATTGCTGTTaatgaaa
tcaattttttgtcttttttgaaaaactataGAAGAACTGATTTGGTagaa
tttttatttaaccattGATTAATGCTGACTAATATTCTGTTTAGAAATGA
AATGGCTACAAATAAAGTAGATCTGAAGAGAGATTCATTGAAATTTCTCT
ATGAGACCCCTTCAAAGACAGAAGTTAAGACTAATGCCCAATTATTGGAA
GAATATCTAAAAGAAAATGCAATAAACAGTAACCACTCtgatattgaaaa
attgaaagaaagattGCGGTTCAAACCCTTGCTGTTAGAGAAATCACTTG
TTGGTAATAAGGATAAAAAGAAAAGgatagaaaaaaggaaaaacaccaAA
CTTGGCAGAGTggcaattaaaaaattgaatctctacaaaatatcaaaaga
tgaaCAAAAGTATGATAGTTTTTTACCTCTACACAATCTTTGGAAAAACT
ATGTacgaaatttatttttgcataaaaacGGAAAAGTGATGATAAGAGCT
GAAGAAAGAGTCCTGAAAATAGACTATCATGGTGCTAAAATTGAGGTGAA
GAAATGTAAATGTGAGTCATTTGTTGGAATCTCTGGAATCATTGTCAAAG
AGacaaaaaatatgtttgaaattatAACACAACAGAACGAACTTAAAGCC
TTACCAAAGAGGGAGACGTTGTTTGAATTTCTTATTCATGGACATAAAAT
CAGCATATATGGAAATGCTATTGTTGGACGACCTGGCGAGAGGATGGTCA
AACGATTTAAGAATACTTATGAATCAGATATGATTTTAGATAATttgtaa
taattttttatttttaacttatttattatttgaagatattttgaatTGGA
ATTCctttcttgttttatttttgctcTTGATCAATGAAAGCTTTTGTTGG
AATTGTCACCATTTTATTCTTTAAaggtttaaccctattcatactaggct
tttaggggcagTTCATACTAGGGGGCTGTTCCTGTACCACTCATTAACTT
TTGATTTAG Run BLAST on NCBI transcript from alignment at scaffold_242:60792..62950- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054311 ID=TCONS_00054311|Name=TCONS_00054311|organism=Clytia hemisphaerica|type=transcript|length=2159bp|location=Sequence derived from alignment at scaffold_242:60792..62950- (Clytia hemisphaerica)
TTCAGAGATTATCAGAGATTATTGCAAAAGTAATTGAATTTAGAGAATAA
GGCTTGCAAAAACAAAAAGAAATTGCTGGAAATTGTGTGTTGTGTTATAG
TTTAGCTGAGCGAAAAAAATGGATAATACTGTGAGAAATTAATAGAACAT
AAATATTAAAATACATATATTGAAATGCTTTTGCTAGGAAATAGGTTAAT
TAAAATTAAATAGAAAATATAGGTAGATGGGATTCTGGCTTAAATTCTAG
TTACTTGGGTATTATAGTTAGATGAGTTGAGTGAAGTAAGAGCTTGGAGC
TTAGAGCGAAAAAGAGGTCCTAGGTGTGAAGTTAATCAAGAGGGGGATAT
CCTAAGTATGATGATAATCAATAATAAATAAAATCTAGGTCACGTGCATC
TCCAACGGTGCCAAATTTTATGCGATCTAAAATATCCGATTTTTTAAGAG
CATCTTTAAATGAGTCATATGAATCACATGCTTTAAGTTTTGGTGTCAGA
TTGTTCAAAATTGACACAACTCGAACACGAAATGATCTCTTATAATCAAC
ATATTTTGATGGTGGTACGTGAAGACGCCAGTCATTTCGATTCTTCTTTT
TTTAGTCACATCTGTCAATCAAGTTAAGAAGCAGTGGTGAATACTGTGCT
TTATATATAAAGTTTAGTAGTGTCGACTGCGCACGCATCCAAACAATTTT
CCATAGTTTTGATTTTAGCGATCGCTCTCTCTCGTAAAAAAAAGGTAGGT
AAAATTCCAGTTCTTGTAAGGAAACCTAGCAGTAGGTAAAGAACTCCTTT
TAATCATAACTTCTTTTCCTCTTGATGCAATTTTTGTGAAATTTTCAGGA
GAGATCCATAAAATTATCATTGATATCATTTTCAAATATCTAAATCATTC
TCTTTAAAGAAAAGGAAACAAAATGAAATGTTTACATTCCTCTAACCTTC
CACAGTACTAAAGTGCATATTTTTAACCTACCGTTTTTACAGTGGAACAC
GGTGGAGATAGCGAGACTCCTAAATGGTGTATTAATCTATTGATCTCTCT
TATAACCAATGTCCAAAAATGTCATAAATAACATAAATAACATGCCAATA
ACTGGGAAGCCTTGGGCGTGGATAGATTTCATAAATTGCTGTTAATGAAA
TCAATTTTTTGTCTTTTTTGAAAAACTATAGAAGAACTGATTTGGTAGAA
TTTTTATTTAACCATTGATTAATGCTGACTAATATTCTGTTTAGAAATGA
AATGGCTACAAATAAAGTAGATCTGAAGAGAGATTCATTGAAATTTCTCT
ATGAGACCCCTTCAAAGACAGAAGTTAAGACTAATGCCCAATTATTGGAA
GAATATCTAAAAGAAAATGCAATAAACAGTAACCACTCTGATATTGAAAA
ATTGAAAGAAAGATTGCGGTTCAAACCCTTGCTGTTAGAGAAATCACTTG
TTGGTAATAAGGATAAAAAGAAAAGGATAGAAAAAAGGAAAAACACCAAA
CTTGGCAGAGTGGCAATTAAAAAATTGAATCTCTACAAAATATCAAAAGA
TGAACAAAAGTATGATAGTTTTTTACCTCTACACAATCTTTGGAAAAACT
ATGTACGAAATTTATTTTTGCATAAAAACGGAAAAGTGATGATAAGAGCT
GAAGAAAGAGTCCTGAAAATAGACTATCATGGTGCTAAAATTGAGGTGAA
GAAATGTAAATGTGAGTCATTTGTTGGAATCTCTGGAATCATTGTCAAAG
AGACAAAAAATATGTTTGAAATTATAACACAACAGAACGAACTTAAAGCC
TTACCAAAGAGGGAGACGTTGTTTGAATTTCTTATTCATGGACATAAAAT
CAGCATATATGGAAATGCTATTGTTGGACGACCTGGCGAGAGGATGGTCA
AACGATTTAAGAATACTTATGAATCAGATATGATTTTAGATAATTTGTAA
TAATTTTTTATTTTTAACTTATTTATTATTTGAAGATATTTTGAATTGGA
ATTCCTTTCTTGTTTTATTTTTGCTCTTGATCAATGAAAGCTTTTGTTGG
AATTGTCACCATTTTATTCTTTAAAGGTTTAACCCTATTCATACTAGGCT
TTTAGGGGCAGTTCATACTAGGGGGCTGTTCCTGTACCACTCATTAACTT
TTGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054311-exon-scaffold_242-1575043694:60792..62950 | TCONS_00054311-exon-scaffold_242-1575043694:60792..62950 | Clytia hemisphaerica | exon |
| TCONS_00054311-exon-scaffold_242-1510915933:60792..62950 | TCONS_00054311-exon-scaffold_242-1510915933:60792..62950 | Clytia hemisphaerica | exon |
| TCONS_00054311-exon-scaffold_242-1491911889:60792..62950 | TCONS_00054311-exon-scaffold_242-1491911889:60792..62950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:60792..62950 - |
Blast
BLAST of TCONS_00054311 vs. Swiss-Prot (Human)
Match: RPP29 (Ribonuclease P protein subunit p29 OS=Homo sapiens GN=POP4 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 5.157e-27 Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 1
Query: 1519 KKLNLYKISKDEQKYDSFLPLHNLWKNYVRNL---FLHKNGKVMIRAEERVLKIDYHGAKIEVKKCKCESFVGISGIIVKETKNMFEIITQQNELKALPKRETLFEFLIHGHKISIYGNAIVGRPGERMVKRFKNTYESDM 1932
++L L+ I ++Q+Y FLPLH LWK Y+R+L MI+A ++LK D HGA I V K KC S+VGI+GI+++ETK++F+IIT+++ LK +PK +F G IYG+ R ER K+FK D+
Sbjct: 82 RELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQA--KLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL 220
The following BLAST results are available for this feature:
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