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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054321 ID=TCONS_00054321|Name=TCONS_00054321|organism=Clytia hemisphaerica|type=transcript|length=8474bp transcript from alignment at scaffold_242:198560..222177- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054321 ID=TCONS_00054321|Name=TCONS_00054321|organism=Clytia hemisphaerica|type=transcript|length=23618bp|location=Sequence derived from alignment at scaffold_242:198560..222177- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00054321 vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4) HSP 1 Score: 172.94 bits (437), Expect = 3.865e-43 Identity = 104/280 (37.14%), Postives = 148/280 (52.86%), Query Frame = 3
Query: 483 VCQCKAGFVGRRCETDVDECSSVKPCKCAVSSPGCSAKCSNTIGSFSCSCNKGFELKYNGQICADVNECERAKARKNKICHHNCINSIGNYYCTCNKGFHLDRDQKTCKDTNECSTLNGGCNQICRNKVGSYGCLCNHGYRLSIANQKTCLDINECLEQKP-CDEKHGICTNLLGTFRCSCKTGYYLMPDKKTCRDRDECARISTNGCQQICYNTVGSYTCSCTNGFRLNEDGRKCGDIDECSVKADNCQHFCHNTIGLFTCSCKPGFKLNKDGHTCQAL 1319
VC+CK G++ + D+ + CA+ C C N GSF C C G+ L +G+ C V+ C A +N C H C+N+ G+Y C C++GF L+ D+KTC + C++ N GC C N SY C C G+ L+ ++KTC IN C KP C+ + C N+ ++ C C GY L P+ KTC D CA+ +GC+Q+C NT S+ C C+ GF +NED + C +D C + C++ C N F C C G L DG TC L
Sbjct: 261 VCRCKQGYI-----LNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYC----ASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLN-PDKKTCRRINYCALNKPGCEHE---CVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQ-QDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKL 526 HSP 2 Score: 159.458 bits (402), Expect = 6.425e-39 Identity = 109/330 (33.03%), Postives = 152/330 (46.06%), Query Frame = 3
Query: 441 CNPGCINGKCAQPNVCQCKAGFVGRRCETDVDECSSVKPCKCAVSSPGCSAKCSNTIGSFSCSCNKGFELKYNGQICADVNECERAKARKNKICHHNCINSIGNYYCTCNKGFHLDRDQKTCKDTNECSTLNGGCNQICRNKVGSYGCLCNHGYRLSIANQKTCLDINECLEQK----------------PCDEKHGI-----------------------CTNLLGTFRCSCKTGYYLMPDKKTCRDRDECARISTNGCQQICYNTVGSYTCSCTNGFRLNEDGRKCGDIDECSVKADNCQHFCHNTIGLFTCSCKPGFKLNKDGHTCQ 1313
C C+N + +CQC GF + D+ + K CA S+ GC +C NT S+SC C KGF L + + C +N C A C H C+N +YYC C++G+ LD + KTC + C+ + GC Q+C N S+ C C+ G+ ++ + KTC ++ CL C E H + C + +F C C GY L D KTCR +D C I +GC+ IC N+ SYTC C GFRL EDG++C D C C+H C N + C C GF L +DG C+
Sbjct: 331 CEHECVNADGSY--LCQCHEGFA-----LNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYC----ALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLIN-EDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQAID-HGCEHICVNSDDSYTCECLEGFRLAEDGKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGRRCK 647 HSP 3 Score: 111.694 bits (278), Expect = 3.462e-24 Identity = 71/176 (40.34%), Postives = 91/176 (51.70%), Query Frame = 3
Query: 795 QKTCKDTNECSTLNGGCNQICRNKVGSYGCLCNHGYRLSIANQKTCLDINEC-LEQKPCDEKHGICTNLLGTFRCSCKTGYYLMPDKKTCRDRDECARISTNGCQQICYNTVGSYTCSCTNGFRLNEDGRKCGDIDECSVKADNCQHFCHNTIGLFTCSCKPGFKLNKDGHTCQAL 1319
QK + CSTL C C N GSY C C GY L+ ++Q TC + C +E C++ +C N+ G+F C C +GY L D K C D CA +GC+ C N GSY C C GF LN D + C ID C+ CQH C NT ++C C GF LN D TC+ +
Sbjct: 233 QKKLCTAHMCSTLEHNCAHFCINIPGSYVCRCKQGYILN-SDQTTCRIQDLCAMEDHNCEQ---LCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCAS-ENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRI 403 HSP 4 Score: 97.4413 bits (241), Expect = 7.056e-20 Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 3
Query: 840 GCNQICRNKVGSYGCLCNHGYRLSIANQKTCLDINECLEQKPCDE------KHG---ICTNLLGTFRCSCKTGYYLMPDKKTCRDRDECARISTNGCQQICYNTVGSYTCSCTNGFRLNEDGRKCGDIDECSVKADNCQHFCHNTIGLFTCSCKPGFKLNKDGHTCQAL 1319
G Q+ N + S G + + +AN + ++K C +H C N+ G++ C CK GY L D+ TCR +D CA + + C+Q+C N GS+ C C +G+ L EDG++C +D C+ + C+H C N G + C C GF LN D TC +
Sbjct: 195 GVGQVDFNTLKSIGSEPHEDHVFLVANFSQIETLTSVFQKKLCTAHMCSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTTCRIQDLCA-MEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKI 362 The following BLAST results are available for this feature:
BLAST of TCONS_00054321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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