TCONS_00054369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054369
Unique NameTCONS_00054369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054369 ID=TCONS_00054369|Name=TCONS_00054369|organism=Clytia hemisphaerica|type=transcript|length=2266bp
ttTACATATATTATTTTATACTTTTATTCTCTTAGATATCGACCATTCGT
GCCGATTGACTGTTTGTTGGTTCCCTCCACAAGATAGCGCAATAGCAATA
CACTTGAGGTACTGATCCAGATATACATCTGCTGCCCTTCATTTTACACC
CTGGAAAGTCAGTTAGTCCAGCAAATTTTGTGGAGATGCCACCAAAGACT
GACACGATTGCCACTGCTAAAGGATGGATAATCACACCTCCCTTTCGCCA
CTGGATTGAATAAGTCCTTGTAATTTTTGATGGTCACAGTACCCACATCA
CTTATGAAGCTTCCCAATAATTgccagaaaaatgaaattgaactTCTTTG
TCTGCTATTTCACGCTTCTCATATACTCCAGCCGCTGGATATTGGAATTT
TCTGGCCAATGAAAGGATATTTCCGCAAAAGATGTGACAACTATCTACAA
CCAGAGCAACTGCCCTCTTGCCAACCAGAACCAACCACCCCATCAACCAG
AGCAACCACCCCATCAACCAGAGCAACCACCCCATCAACCAGGGCAACCA
CCCCATCAACCAGAGCAACCACCCCACCAACCAGAACAACCAACAGTACA
GAGTAGCCACCACACCAACCAGATAAAACAACCTACCAATCATCCATTGA
ATCAGAACAACTAGACAACAGTGTTCATTTTCAAATCGTAAACCAAAATA
GTTCCTTACCCTCAACATCCGATTGTGTTATCCCAACGCCACTAACAAGC
TTCACACTGGATACCtcaaacattattttttcatctccCATTAAAAACAT
CAAGACTCTATGCTAGTGAAGGAACTTTTGCATTTAGAAACATTTTTGAC
AAAAGACCAATCATCCATCTTGCTCAACAAGAGATTTGAGCATGGGTACG
AACCTGATAATGATGACTTTTTGTTTAAGTCTTTGCATGTTTCGAAAGAG
GGGGTAGAAATGGAAAGATCAAAACTCCTCAACCTCATTAAAGAAAGGTG
CCAAGCAACAAACTCAACAAATAAGGCACAAAAAGCAATTTTAACAAtgc
caaaaattcaaaaaaaaatgtcccaaaaaaaggcTCCCTTAGTATCATCT
TACTTCTGATGATGCATTGAAAATCTTAGAAGAGGATTACATAAAGAAAC
GACAAAAGGAAGAAGGAAAACAGTTTAAACTGACGgtcaaacaaaataaa
caagaattgaaaatgtaaacagcaatcgaaaaaataacaaaaaaggaaAA
GCAAATCTCAGAAACCagcaaagaaaaaacaaaaattaataaacgaaatt
taaaaagaaaaccaacCAACAACAAGGCAATCAACAACCAACCAATAGCA
AACAGATCAAAGCGACAGCAAAAAAGGGTCAATTACGCTCTAATGATTAA
CCAAGGAAGTGATATTGAGGATGGAAGTGTTATTGAAGAAAGAAATGAGA
ATGAGGGACAAGATGAGTGTAATAAGTGCAAGAGACAGTTGGAGGGAGGC
AAGGATGAGTCTGAGTGGATTTAATGTGAAAAATGTGATCAGTGGATGCA
TGAACACTGCACTCATTTGGCACTCATGTTTCCAAAAATGACACTGACAC
AGGTCCacgatttcaattttgaatatgATGAATGTGCTTATAACTTTTAC
CCTAAGAGTTCGAGAGGTTGGTGCCATTTTTAAAAGGTAACTCAAGTTAA
CACAATCAGCACCTTAATAATTGAAATCATGCACCTGTTTTAGTCAGATA
AAAGCTTTATTTATTACCCCCATTTTTGCAACACACACAGTAGCATAGta
aagaggggcgcaaaatttgtgtagtagagcagatttttatgccaTTATGA
TTATCTTTTAATACCATAAatagataattactgtgtcataaaaatctgct
ctcctacacaaatttgaCGCCCCTCCTGCCTACGCTACTGACACGAGGAA
AAGATTTATTAACCAGCAATGaatgaaaagtaaaaacattATCCAAAAAT
CTTGTAACGATGGTTCTTATTTCAATCAATATTCAAGCCAATCAGAATGC
TaactttcttttgaaagaaaacccTGGTGCAAACTTCTTTTTGAATGAGA
ATGAAATCTCAATACAGCATACAAACCATGGCTTGATTCGAGGGGAGATT
TAAAATCTCAAGCGCAAGGTTGACTAAAAATGATATTGTTTTCttgctaa
aagtcaaaaacttttgagattttgctcagaatcattaaaaatcattaaat
cttTAAGCCAAAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00054369-protein

>TCONS_00054369-protein ID=TCONS_00054369-protein|Name=TCONS_00054369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MVTVPTSLMKLPNNCQKNEIELLCLLFHASHILQPLDIGIFWPMKGYFRK
RCDNYLQPEQLPSCQPEPTTPSTRATTPSTRATTPSTRATTPSTRATTPP
TRTTNSTE
Run BLAST on NCBI

transcript from alignment at scaffold_242:939208..941598-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054369 ID=TCONS_00054369|Name=TCONS_00054369|organism=Clytia hemisphaerica|type=transcript|length=2391bp|location=Sequence derived from alignment at scaffold_242:939208..941598- (Clytia hemisphaerica)
TTTACATATATTATTTTATACTTTTATTCTCTTAGATATCGACCATTCGT
GCCGATTGACTGTTTGTTGGTTCCCTCCACAAGATAGCGCAATAGCAATA
CACTTGAGGTACACGTTTTTATCAATTACAGAATTTTTCTCATCAAGAGG
ACTTGGAAAATGGCCTTATTATTCTCATTATATTTGTTCAGGTACTGATC
CAGATATACATCTGCTGCCCTTCATTTTACACCCTGGAAAGTCAGTTAGT
CCAGCAAATTTTGTGGAGATGCCACCAAAGACTGACACGATTGCCACTGC
TAAAGGATGGATAATCACACCTCCCTTTCGCCACTGGATTGAATAAGTCC
TTGTAATTTTTGATGGTCACAGTACCCACATCACTTATGAAGCTTCCCAA
TAATTGCCAGAAAAATGAAATTGAACTTCTTTGTCTGCTATTTCACGCTT
CTCATATACTCCAGCCGCTGGATATTGGAATTTTCTGGCCAATGAAAGGA
TATTTCCGCAAAAGATGTGACAACTATCTACAACCAGAGCAACTGCCCTC
TTGCCAACCAGAACCAACCACCCCATCAACCAGAGCAACCACCCCATCAA
CCAGAGCAACCACCCCATCAACCAGGGCAACCACCCCATCAACCAGAGCA
ACCACCCCACCAACCAGAACAACCAACAGTACAGAGTAGCCACCACATCA
ACCAGTGCCAATTCCCCACAGTACAGAGTAGCCACCACACCAACCAGATA
AAACAACCTACCAATCATCCATTGAATCAGAACAACTAGACAACAGTGTT
CATTTTCAAATCGTAAACCAAAATAGTTCCTTACCCTCAACATCCGATTG
TGTTATCCCAACGCCACTAACAAGCTTCACACTGGATACCTCAAACATTA
TTTTTTCATCTCCCATTAAAAACATCAAGACTCTATGCTAGTGAAGGAAC
TTTTGCATTTAGAAACATTTTTGACAAAAGACCAATCATCCATCTTGCTC
AACAAGAGATTTGAGCATGGGTACGAACCTGATAATGATGACTTTTTGTT
TAAGTCTTTGCATGTTTCGAAAGAGGGGGTAGAAATGGAAAGATCAAAAC
TCCTCAACCTCATTAAAGAAAGGTGCCAAGCAACAAACTCAACAAATAAG
GCACAAAAAGCAATTTTAACAATGCCAAAAATTCAAAAAAAAATGTCCCA
AAAAAAGGCTCCCTTAGTATCATCTTACTTCTGATGATGCATTGAAAATC
TTAGAAGAGGATTACATAAAGAAACGACAAAAGGAAGAAGGAAAACAGTT
TAAACTGACGGTCAAACAAAATAAACAAGAATTGAAAATGTAAACAGCAA
TCGAAAAAATAACAAAAAAGGAAAAGCAAATCTCAGAAACCAGCAAAGAA
AAAACAAAAATTAATAAACGAAATTTAAAAAGAAAACCAACCAACAACAA
GGCAATCAACAACCAACCAATAGCAAACAGATCAAAGCGACAGCAAAAAA
GGGTCAATTACGCTCTAATGATTAACCAAGGAAGTGATATTGAGGATGGA
AGTGTTATTGAAGAAAGAAATGAGAATGAGGGACAAGATGAGTGTAATAA
GTGCAAGAGACAGTTGGAGGGAGGCAAGGATGAGTCTGAGTGGATTTAAT
GTGAAAAATGTGATCAGTGGATGCATGAACACTGCACTCATTTGGCACTC
ATGTTTCCAAAAATGACACTGACACAGGTCCACGATTTCAATTTTGAATA
TGATGAATGTGCTTATAACTTTTACCCTAAGAGTTCGAGAGGTTGGTGCC
ATTTTTAAAAGGTAACTCAAGTTAACACAATCAGCACCTTAATAATTGAA
ATCATGCACCTGTTTTAGTCAGATAAAAGCTTTATTTATTACCCCCATTT
TTGCAACACACACAGTAGCATAGTAAAGAGGGGCGCAAAATTTGTGTAGT
AGAGCAGATTTTTATGCCATTATGATTATCTTTTAATACCATAAATAGAT
AATTACTGTGTCATAAAAATCTGCTCTCCTACACAAATTTGACGCCCCTC
CTGCCTACGCTACTGACACGAGGAAAAGATTTATTAACCAGCAATGAATG
AAAAGTAAAAACATTATCCAAAAATCTTGTAACGATGGTTCTTATTTCAA
TCAATATTCAAGCCAATCAGAATGCTAACTTTCTTTTGAAAGAAAACCCT
GGTGCAAACTTCTTTTTGAATGAGAATGAAATCTCAATACAGCATACAAA
CCATGGCTTGATTCGAGGGGAGATTTAAAATCTCAAGCGCAAGGTTGACT
AAAAATGATATTGTTTTCTTGCTAAAAGTCAAAAACTTTTGAGATTTTGC
TCAGAATCATTAAAAATCATTAAATCTTTAAGCCAAAAAAC

Coding sequence (CDS) from alignment at scaffold_242:939208..941598-

>TCONS_00054369 ID=TCONS_00054369|Name=TCONS_00054369|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_242:939208..941598- (Clytia hemisphaerica)
ATGGTCACAGTACCCACATCACTTATGAAGCTTCCCAATAATTGCCAGAA
AAATGAAATTGAACTTCTTTGTCTGCTATTTCACGCTTCTCATATACTCC
AGCCGCTGGATATTGGAATTTTCTGGCCAATGAAAGGATATTTCCGCAAA
AGATGTGACAACTATCTACAACCAGAGCAACTGCCCTCTTGCCAACCAGA
ACCAACCACCCCATCAACCAGAGCAACCACCCCATCAACCAGAGCAACCA
CCCCATCAACCAGGGCAACCACCCCATCAACCAGAGCAACCACCCCACCA
ACCAGAACAACCAACAGTACAGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034279XLOC_034279Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054369-exon-scaffold_242-1575043694:941491..941598TCONS_00054369-exon-scaffold_242-1575043694:941491..941598Clytia hemisphaericaexon
TCONS_00054369-exon-scaffold_242-1575043694:940903..941407TCONS_00054369-exon-scaffold_242-1575043694:940903..941407Clytia hemisphaericaexon
TCONS_00054369-exon-scaffold_242-1575043694:939208..940860TCONS_00054369-exon-scaffold_242-1575043694:939208..940860Clytia hemisphaericaexon
TCONS_00054369-exon-scaffold_242-1510915933:941491..941598TCONS_00054369-exon-scaffold_242-1510915933:941491..941598Clytia hemisphaericaexon
TCONS_00054369-exon-scaffold_242-1510915933:940903..941407TCONS_00054369-exon-scaffold_242-1510915933:940903..941407Clytia hemisphaericaexon
TCONS_00054369-exon-scaffold_242-1510915933:939208..940860TCONS_00054369-exon-scaffold_242-1510915933:939208..940860Clytia hemisphaericaexon
TCONS_00054369-exon-scaffold_242-1491911889:941491..941598TCONS_00054369-exon-scaffold_242-1491911889:941491..941598Clytia hemisphaericaexon
TCONS_00054369-exon-scaffold_242-1491911889:940903..941407TCONS_00054369-exon-scaffold_242-1491911889:940903..941407Clytia hemisphaericaexon
TCONS_00054369-exon-scaffold_242-1491911889:939208..940860TCONS_00054369-exon-scaffold_242-1491911889:939208..940860Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054369-proteinTCONS_00054369-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:939208..941598 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.639453	0.645364	0.514427	0.196325	5.41894	3.69737	4.52821	4.55448	2.24127	3.3759	3.06416	2.4526	2.25708	2.05416	0.926672	1.88599	1.75698	1.90889	1.6124	1.86593	1.45265	1.06737	0.830568	1.5352	2.88615	3.61624	1.2239	0.869729	0.922948	0.786192
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004875DDE_SF_endonuclease_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top