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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054387 ID=TCONS_00054387|Name=TCONS_00054387|organism=Clytia hemisphaerica|type=transcript|length=811bp
TTATTTGGTTTTGACCAACAATGTGATACGTTCATCAATGCAGAATGTGG
CTTTTGGAAGGAATCTAACTTCAAAGGTTACATACCACATAAGATTAAAA
ACATTCCAAAGAAAATTGTACCAAGAGAGAGTAAACATTTGACTAAGAAT
GTCCTCTCAAACCAAACAAAGcaatatcaaaataaacaacTTGACACTTT
ATGGATCTATGGTGATTCCCAGGGACGTCGTTTTTATTGGTCACTCATAA
AGCATGAGTTGTGTACAAAATTATTTAAGAAGTGCGACCATACCTATACG
TGGACATACAaacattttaattcaaattcaCACGATGATAGATACAAATT
TACCGGTGACGATTTCAACGAAACGCGAATTCTTAACGACATCAATCTTC
GAGAAGCGTTGTACTGATAAATTTCGGTTTGCATATTGTATTATCAGTTG
GGCTTGAACGTGGTTTTAGATTATTTGATAGTTTCATAGACAtggttaaa
aaaaaacgtgtaaaccaCAGACCATACAAGGTACCTTTGATCATTTGGAA
GACGACAACACTACCAGTCCTTGAGAATGTCCCTTCAGTACTGAATTCAA
CCGGTCTACGTTTCATGACCAAACAGCGTATCGATGCATGGAACAGCTAC
ACTATTACTGCTGCATGCAAAGCCGACCTTCCCATTTTGGCAGTTCATAA
TCATCCACGTGCTTGTCCTTTCAAACCTGTTGATTGGGTTCATTTTGAAT
ATGAAGTCTTTCGCAAAGCAGAGGATGAATTGAAGACTTTTCTAATACAG
AAGTACGGAAT Run BLAST on NCBI protein sequence of TCONS_00054387-protein >TCONS_00054387-protein ID=TCONS_00054387-protein|Name=TCONS_00054387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
LFGFDQQCDTFINAECGFWKESNFKGYIPHKIKNIPKKIVPRESKHLTKN
VLSNQTKQYQNKQLDTLWIYGDSQGRRFYWSLIKHELCTKLFKKCDHTYT
WTYKHFNSNSHDDRYKFTGDDFNETRILNDINLREALY Run BLAST on NCBI transcript from alignment at scaffold_242:1126072..1128002- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054387 ID=TCONS_00054387|Name=TCONS_00054387|organism=Clytia hemisphaerica|type=transcript|length=1931bp|location=Sequence derived from alignment at scaffold_242:1126072..1128002- (Clytia hemisphaerica)
TTATTTGGTTTTGACCAACAATGTGATACGTTCATCAATGCAGAATGTGG
CTTTTGGAAGGAATCTAACTTCAAAGGTTACATACCACATAAGATTAAAA
ACATTCCAAAGAAAATTGTACCAAGAGAGAGTAAACATTTGACTAAGAAT
GTCCTCTCAAACCAAACAAAGCAATATCAAAATAAACAACTTGACACTTT
ATGGATCTATGGTGATTCCCAGGGACGTCGTTTTTATTGGTCACTCATAA
AGCATGAGTTGTGTACAAAATTATTTAAGAAGTGCGACCATACCTATACG
TGGACATACAAACATTTTAATTCAAATTCACACGATGATAGATACAAATT
TACCGGTGACGATTTCAACGAAACGCGAATTCTTAACGACATCAATCTTC
GAGAAGCGTTGTACTGATAAATTTCGGTTTGCATATTGTATTATCAGTTG
GGCTTGAACGTGGTTTTAGATTATTTGATAGTTTCATAGACATGGTTAAA
AAAAAACGTGTAAACCACAGACCATACAAGGTACCTTTGATCATTTGGAA
GACGACAACACTACCAGTCCTTGAGAATGTCCCTTCAGTACTGAATTCAA
CCGGTCTACGTTTCATGACCAAACAGGTAAGTGTTAAATTCTCTTTGTTA
TGCTCATCTCACCAAAAAACAATTACCCCTTTTCAATATATCATATGGTG
ATTTAACCTTCTATGGTTTTTTCATCGCTCTTGACTCCCGTCTGGGAGGT
CCGAGTTCGATTCCCACTATAGTACTACGGTTCACTTGGCAAGGGAACAC
TCCTTTTGCTGGGGGGATTTTTTTCAAGAAATTTTGCAAAAGGGGGGGGG
GGCAAAGGGAAAATGGAAATCCAGGGGGGATTTCATAAAGGTGCAACAAA
ATTTTTCTGGGGGGGAACTTTTCAACTTTTTGACAGAAAGTGTTCTGTCA
CCTTTTTAGGGGGGGTTGCTACTTCGTAAGGAGTAGGGCTCATTCCCAAA
TGGAGAGGGCTCATATCATATCAATTGTACTCAATGGTTTACGGTTTTTA
AAAAATTAGTTAGGTTGTTCCCCTACGGATTTTAGACTTTGATAATTAGT
TTTTTTCTTTAAAGGGAACGACGCATGGTATATTTATGAAATGCTGATCT
AGCATTGGCACAAACACCCATACGGAGGAGTATTTAGGAGTGCTGGATCA
TAACAAAAACCAAAAGTGACTTTATTCCAAAAAATATATTCAAAAAAGTG
AATATAATTTACTATAATGATCAACAACAACACAAAAAGACTTACATAAA
AATGAAAGAATAAAAGAATGTCTTTTTCTTTTGAATGAAATCGAGTGTTT
CTATTTTTAAATGAAGACATTCTATTGTGAATTTATTCGAAAACTTCTTT
GCAATCTTTTTGTTTACATTTTGTCTTCATTCACTTTCGTTTACTGTTGA
AAACATAACAAAGTTTTAGCTATACTCTCAAACCACGTATAACTGTCGGT
TAAGCCAATCAGCTTTCGGGCTGACATCAGCATGTATTTCAGAGTATACC
ATGGAAGTACCAGCAACTCCGACCCCTACTATAAGTATAGCGCTATTCCC
TTTAAAGAATTACACTTATGACGGAGACTGCTTTTGATCCATTCCTGGAA
ATCAACACACGACTCCCCTTCAGATCCGCCATTTCAAGTTATCACCAGGT
TGATTCTGTTATGGTCTAATAAAAGTCTCTCATTATAATTTTCTAGCGTA
TCGATGCATGGAACAGCTACACTATTACTGCTGCATGCAAAGCCGACCTT
CCCATTTTGGCAGTTCATAATCATCCACGTGCTTGTCCTTTCAAACCTGT
TGATTGGGTTCATTTTGAATATGAAGTCTTTCGCAAAGCAGAGGATGAAT
TGAAGACTTTTCTAATACAGAAGTACGGAAT Coding sequence (CDS) from alignment at scaffold_242:1126072..1128002- >TCONS_00054387 ID=TCONS_00054387|Name=TCONS_00054387|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_242:1126072..1128002- (Clytia hemisphaerica)
TTATTTGGTTTTGACCAACAATGTGATACGTTCATCAATGCAGAATGTGG
CTTTTGGAAGGAATCTAACTTCAAAGGTTACATACCACATAAGATTAAAA
ACATTCCAAAGAAAATTGTACCAAGAGAGAGTAAACATTTGACTAAGAAT
GTCCTCTCAAACCAAACAAAGCAATATCAAAATAAACAACTTGACACTTT
ATGGATCTATGGTGATTCCCAGGGACGTCGTTTTTATTGGTCACTCATAA
AGCATGAGTTGTGTACAAAATTATTTAAGAAGTGCGACCATACCTATACG
TGGACATACAAACATTTTAATTCAAATTCACACGATGATAGATACAAATT
TACCGGTGACGATTTCAACGAAACGCGAATTCTTAACGACATCAATCTTC
GAGAAGCGTTGTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054387-exon-scaffold_242-1575043694:1127377..1128002 | TCONS_00054387-exon-scaffold_242-1575043694:1127377..1128002 | Clytia hemisphaerica | exon |
| TCONS_00054387-exon-scaffold_242-1575043694:1126072..1126256 | TCONS_00054387-exon-scaffold_242-1575043694:1126072..1126256 | Clytia hemisphaerica | exon |
| TCONS_00054387-exon-scaffold_242-1510915933:1127377..1128002 | TCONS_00054387-exon-scaffold_242-1510915933:1127377..1128002 | Clytia hemisphaerica | exon |
| TCONS_00054387-exon-scaffold_242-1510915933:1126072..1126256 | TCONS_00054387-exon-scaffold_242-1510915933:1126072..1126256 | Clytia hemisphaerica | exon |
| TCONS_00054387-exon-scaffold_242-1491911889:1127377..1128002 | TCONS_00054387-exon-scaffold_242-1491911889:1127377..1128002 | Clytia hemisphaerica | exon |
| TCONS_00054387-exon-scaffold_242-1491911889:1126072..1126256 | TCONS_00054387-exon-scaffold_242-1491911889:1126072..1126256 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1126072..1128002 - |
Blast
The following BLAST results are available for this feature:
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