|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054408 ID=TCONS_00054408|Name=TCONS_00054408|organism=Clytia hemisphaerica|type=transcript|length=2552bp gaaagattttaaaagtcaGTATCATAACCAAAAGAGCGTTTGCACGGAAA GTTTTCTGGtcaattttggtattttttgaaaatgtgtgtGGTtttatgaa gaagaaaatgtctGCTACCATGTTGAAGATTTGGTTCTACACATCCCTGC TACTTTTTGTCGCCGTTGCTTCAtcaaaagGCAACAAGAGACATTTGGGT TTACCACACGATCTTCCAGACattttgaaaaacgatAAAGTTGATGCAAA TGATTTGAAATATGCAACAGACGATTTTCGTGTTGATACTCATCCGAATC AAGGAGTCATCATTGAAAGTGAAGGCGTCGGAGGACCTCATAAGAAAAGC CAAACCCTTCAGCCCAAAAAGAAGGGTAAAGAAATGACAGGAGTGAAGAA GCAATTTGGCACGGACTTAAACATGATGCCCGAATTACCGTTAGTTGGTC CACAACCGGAAGAACATCTTACCGTAGAACCTCCTGCACCGATCGAACCT ATCGAGCCGGTACACCCGATTGAACCGGTACCGATAGAACCGATGCCGGA ACCAATCATATCACATGTATCTGAACCAGTCCCTATTATCCAACAAGAGC CACCTCCAATTGTACACCACGAGGAACCTATCATTCATCATGAGCCTGTT CTCCTCCCAGTCCCCATCGCCGCCCCTGCTCCTCCACCGCCACCGCCCTG CACCGTACATATCCCGGTTACCGTTCATTTGAAAGGAAAGCTTGCTATCA AGATGAAACATTGTCAGAAATGtgatttttcaaagaatatcgagTCTATT GGTCCTTTGAAAATCTCCTCTCTGAATCAATTAGAAGACAAACTAAAGGA ACGTTTGGACAAATCGTTCAAAGTCAATGCTAAACGAGGAGGTAAAAAGA GAGGGAAATTACATAAAGCACATCACAAGAAATCAAAAGATATTAAAGGC ACTAAACGTGATCACCCGCCTGTTATTGATTACGACCGCCTAGACCGCGC GAACGAACGCTTCATTTTTGGTAGCGATGGCGAGGAGGGCGAGGAAACTG ACGTTCAAGGGAGCAAGAAAGATCAAGTGGATGAACCAGGACAAGACGCT TTCTTCAGGAAAGCTGTCaacattccaaagGTGTTTATCCCATCAGCTGC TTACAAACGCGGTGTCATCATCAGTCTACCCAAAGGGAAAGCCATGTTGA AATGTGTTGTCCCCaaagatgaaaacaaaaaatcttctaaaaaagaaaag atagatGACAATTCATCTTTTATTTCGTTTATTACCAAGCCAACTGAAGC TCCAGCAGGCGAGAAGAAAGTTATTTCTCCGAGTCTTGCTGATTTTTCTA ACAATGTGGAGCCACCAGAAGAGGCGGCGCCAGCCATAGCAAGCTTCACC AAAACAGCCACTGAGAAGGAATCACCATTACCTCAAAGCGGTGTTAGTGG TGTAACCAAGTCTGAAAACACTGCTGTTGCGAAAGACAAGCAAGACGTAA CCGATACTAATAGTGATGTTGTGACGCTTTCAACCGAGCCGGCAGCTGAA GCGGCGCCAAAACCACAAGCCAATCTAAAGGAGCACATAGAATCAGCTAT ACAAAATATCAAATTCCCTTCCACCGAAGAAAAAGCACCAACGGCCGGTG TGACACAACAATCTTCAATAAGTGAAGCAAGTGCAGCAAAGCAACCGTCA CCtgaaacacaaaacaaaaaatttgctgATAATTTTATGAAAGTCTTGGA TAAAGATATGCTTGTTTCTCTTTACAAAATGGCTGTTCATGATATTATGA GTGAACTGCAAAACGCCAAAACAGTCGCTCATAACGAGGAAGCACCTTCA ATGACTGAAACTTCGAACCTCCAAAATAAGATGAAAATGATCAGCAATGA ACGAACAGCTTTGGAGCAACAATATCCAGGGATTGCAGCCACTTTGATTG CACCACCAGATTCTGCTTTTAATATGCAGCAACAGAGAGCTGTAAAGAGA TCGGAAACTCCTTCGAAGAGAGTAAAACTGATTGATACTGATCGTCCAAA GATTCGTGCATCGCGACACGGAAACGTAAAGCAATTCGTAGCAGCTGATG AAAGCGGATTCTTTGGTGATTTGGATCCTTCCAAACTTATTGATGATCAT GAGAAAGATTGCATTGAACCTACTTGCCAAAAGCAAAAAGACTTCATGAA AGGGGCTTCTAAATATTTCGAAAGCTTGGATACTCTTGCCTTAGCTCCAT ATCAAAACTTCATGGGGAAGACTTTACAGAACAAACGAGAATCAATCGAA GTCGGTCAAACACAACAACCAAGTACTATTGTGGAGCTGTTCGGTAAATT ACCCAGGGTTCCActcaaaattactttaaatCCCAAAGGACCGTTAGCCA AgctgaaagaaccaatcacgaTTGATTTGAAACCTCCAGATGGTAAACGA TCAAACTCCAGAGCTGTTGCCATAACCAACAACCCTGCTGTTGCAGTGAC TATCGCAGATCGTATCTTTAAGGACGAACCAATGACTAAGGAAGACCAAA AC Run BLAST on NCBI transcript from alignment at scaffold_242:1547742..1554037- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054408 ID=TCONS_00054408|Name=TCONS_00054408|organism=Clytia hemisphaerica|type=transcript|length=6296bp|location=Sequence derived from alignment at scaffold_242:1547742..1554037- (Clytia hemisphaerica) GAAAGATTTTAAAAGTCAGTATCATAACCAAAAGAGCGTTTGCACGGAAA
GTTTTCTGGTCAATTTTGGTATTTTTTGAAAATGTGTGTGGTTTTATGAA
GAAGAAAATGTCTGCTACCATGTTGAAGGTGAGGTCAAACTTTTGTTTTC
TTTTGTTTTCTTTTGTTCTTGCTATATATTTGTGGTACGTTTTGTTTGGA
GCTCTCGCATGGAAACGAAACACTAATAAAATTGTCAAATTTTATGTGAT
TATCTTCCTGACTTAAATCCAACTATCCGAAAATTACCTCTCCTACGTCC
TAGATAGAAACTTTTCGTGTGTTCATGATAAAGCTATGCACATGTTGTTC
TAGCTGTGTAAGAAAGCACAAAAATATGTTGATACCAATATACTATCTCC
CCTTGTGGGTAATCTCTGTGCCAGGGCGAATCTTACGTAAAACGTACCGT
GGGGAAGGGGGTTGTACTTTTGCGGTGTAAAGGGATTGGCCCTTTTTTAG
TATGGTATTACGGGACTTGACAAAAAAGAGACGGGAAAACAGATTTCCAT
AGATATTGGGTCTCTGGCCCTGGCAGTGTTCTTTTTTACATACCTACACT
CTGTTCCGTTCTCAAAAGGAAAGTATAATTAATACACCATGCGATTCCTA
CTTTTAGATTTGGTTCTACACATCCCTGCTACTTTTTGTCGCCGTTGCTT
CATCAAAAGGTAATTATTTTCAATTTGGGCTAAAGTCCTCAGGATCTCAG
GATCTCAAAAGCTCATAATTCGTATTCCAATAAGGCTGAGAATATAGCCT
AGAAGCCACTGAACCCCTCCAAAATCGAAATATCCAATGAAATAAAGTGG
AACTAGCCGACTGATAGTGTGAAGGTTTCGATCACAAACTTACACTGCAA
TGGACTGTGTTCGAATCCCAAGCACTTTCAGGCAGGGTGCTAGGGGAATA
TGGTGATAGACTCTCACTCATTAAGTGGAATTACTAAATTGGCAATTCTC
ACCCGAACTTTAAATTCTGAGCAACGTTAAAATGCACAAAATTCTCAATA
TATTTTGACCAAGATTGCAGAAACAATACATTTAAGTTTTTTATTATCAG
GCAACAAGAGACATTTGGGTTTACCACACGATCTTCCAGACATTTTGAAG
AACGATAAAGTTGATGCAAATGATTTGAAATATGCAACAGACGATTTTCG
TGTTGATACTCATCCGAATCAAGGAGTCATCATCGAAAGTGAAGGCGTCG
GAGGGCCTCATAAGAAAAGCCAAACTCAAAAGTTAAAAGGTTTATCCATG
TTTTTGTTTAACCCTTTAACTGCAGTTACTTGTTTGCTACCAAACTGAGG
TCGTGCGCAGACCAGGGAGATACTAGGATTCAGAGCTGACGGGTGCGTGT
CGCCCGACTTCTGCCGCGCCTACTTCGCCGACCATAAAATGCTGAGTGGG
TAGTGGCCTTTAGTGAGACTAAAAAGTAGGGAAACCTTTGTGAAATTTAC
AACCCTGCTTGGGACTAATTTGACCTAATTTTGATCTTTCAAGGAGCAAA
TCCTTGAAATTTTCCGATTTCTCCGACCCTTAGTGGGACTGAGATTTAAT
TTTCTGACCTTCTCAATCTTAATAGGAACTGCCAGGTTCCAAAAAGACAC
CCTTAAGGATGGCACATACCTGTACCCTTCACTTGCCTTGGAACCCCTCT
GGGCTCAGCTATGCGTGTTGGCACATTATCATATGTAGGTCTTCAAGTTC
CGTTTGCGTATGTGTGGTTTTTTGACAAGCCTCCACTATCTAGATTAAAG
GACCACCCCCGTAACAGAATATCTTTCTTTTTATTTCTTTCGTAGAAATC
ACAGGCAACAAGAGACATTTTGGAATGCCACACGATCTTCCAAATATTTT
GAAGAACGATAAAGTTGATGCAAATGATTTGAAATATGCAACAGACGATT
TTCGTGTTGATACTCATCCGAATCAAGGAGTCATCATAGAAAGTGAAGGT
GTCGGAGGACCTCATAAGAAAAGCCAAACTCGGAAATCAAAAGGTACGTT
TTTCTGTAGTTTGTTTTGGCTTTCGTACAGTGTCCTCTTTTTATGGAACA
TTAGACGCTTCCTGGTCTAGGATGGGCGGAAAATCTGGTGGCTCAAATAG
TGATTACCTGAAGGCGTTTTAAAGCATCGGCCCGTAAAAACTTAAAATGT
TATCAATCGCGTGTGAATGTGAGTATTTTGTTGAAATTCCACGATCTATA
AGTTCAAAGACCCTAAAATCCATCGAATCATCACAGAATACGGTCAAAGA
AAAATTACTTTGATAATATCTGCGAAATTGGTTTAACCTCGACTTTCCAA
CTAATATCTGAATCCTTTCTTTAAATTCAAAATTTAACTTTTTGGCTATT
TTGTAGATGTCACGTTCAACAAGAGACATTTGGGAATGCCTCACGATCTT
CCAGACATTTTGAAAAACGATAAAGTTGATGCAAATGATTTGAAATATGC
AACAGACGATTTTCGTGTTGATACTCATCCGAATCAAGGAGTCATCATTG
AAAGTGAAGGCGTCGGAGGGTCTCATAAGAAAAGCCAAACTCAAGAATCA
AAAGGTATTTTCACATCTTTTTGTCGTTTATTTTGGCTTTCGTTTTAGAA
GATTAGCTAGTTCGCACTTTGAAACTGCTATTTTTGATACCGCCTGATAA
AGGACGGGCAGGAAAAGCGGTAAAAGCGGTAAAAGTTATAATATTATCGG
TCGTGTGTGTATGTGGGTATTTTGTTAAAGCTCGAGGCTCGAAATTCGAG
AATCCTAAAATCTCTATCCAATTTTCATCGAATTTGGTCAGAGAACAATT
ACTTTCATTATGGTCTTTGTGAATTTTGTTTAACCTCAACTTTCCGTCAT
AGTATCTAAATCCTTTATACTATTTCCAGATTTTTCCTCTTTGACCGTTC
TTTTTCGTAGACGCAACGTTTGACAAGAGACAGTTGGGCTCGCCACGTGA
TCTTCCAGACATTTTGAAGAACGATAAAGTTGATGCAAATGATTTGAAAT
ATGCAACAGACGATTTTCGTGTTGATACTCATCCGAATCAAGGAGTCATC
ATCGAAAGTGAAGGCGTCGGAGGACCTCATAAGAAAAGCCAAACCCTTCA
GCCCAAAAAGAAGGGTAAGTTTACATTTCTTTAACGACAGACGTTCGTAG
TGCTAAAACACTGAAGAACATGCTTTCAAAATGCTTGTCTGAAAGATTCT
AGCATCAGGTTCAAATTTCTGGCCAGATGATTGGAGAAATTGTTCTCGAA
ACGTAGCCGAAAGTAACTCTCGTGATTCAAGTCGTGCTAAACCTTCAATA
TAGATATTAGCTCTGTCTTCTAAAATAAGTACCATTTAATTTCGCGATTT
AGCCATTTTGGTGTGTTTCGCGGAATTTAATTTCGCGAATTACGCCCAAA
TTCGCGAAATTAAATTCCGCGAAAATTTCTTCCGCAAAAATTTCTTCCCT
TAAGGTAATAGTTATCGGACAATTGCGAGTACAATATGAGAAATATTTTA
CGAGTTCCGAGATTTTTCCGTATAATATTTTCCGAGTCTTTAGAGGAGGA
AAATATACGGAAAATCTGGAACGCGTGAAATAATTCTATATTGTACGAGC
AATAGACGATATCGGCTTAACGAAATTCTCTCCGAATGATTACCCATGAT
GCATTGCGCAAAAAAATTCAGTAAGTCAATATTGTCCGTGAATTTTTTTG
CGCAATGCATTATGGGTAATCATTCGGGGAGAATTCAGAAAGCCGATATC
GTCTATTGTCTAATAACTATTTTTCTATGACCTTAGGTAAAGAAATGACA
GGAGTGAAGAAGCAATTTGGCACGGACTTAAACATGATGCCCGAATTACC
GTTAGTTGGTCCACAACCGGAAGAACATCTTACCGTAGAACCTCCTGCAC
CGATCGAACCTATCGAGCCGGTACACCCGATTGAACCGGTACCGATAGAA
CCGATGCCGGAACCAATCATATCACATGTATCTGAACCAGTCCCTATTAT
CCAACAAGAGCCACCTCCAATTGTACACCACGAGGAACCTATCATTCATC
ATGAGCCTGTTCTCCTCCCAGTCCCCATCGCCGCCCCTGCTCCTCCACCG
CCACCGCCCTGCACCGTACATATCCCGGTTACCGTTCATTTGAAAGGAAA
GCTTGCTATCAAGATGAAACATTGTCAGAAATGTGATTTTTCAAAGAATA
TCGAGTCTATTGGTCCTTTGAAAATCTCCTCTCTGAATCAATTAGAAGAC
AAACTAAAGGAACGTTTGGACAAATCGTTCAAAGTCAATGCTAAACGAGG
AGGTAAAAAGAGAGGGAAATTACATAAAGCACATCACAAGAAATCAAAAG
ATATTAAAGGCACTAAACGTGATCACCCGCCTGTTATTGATTACGACCGC
CTAGACCGCGCGAACGAACGCTTCATTTTTGGTAGCGATGGCGAGGAGGG
CGAGGAAACTGACGTTCAAGGGAGCAAGAAAGATCAAGTGGATGAACCAG
GACAAGACGCTTTCTTCAGGAAAGCTGTCAACATTCCAAAGGTATTTCTA
CCTTATACATACTTTTTGTCTTCGGCTTAAGTTTGCTTTCACCCACTGGA
ACCTTAGTAATTCAAACTAATCATAACTCGTTGGATAGATTGTTTTCCTT
AAATTTCCAGTTATCATGGTCTTTGTGCGAAGAGCTTACGATTTCAGAAT
TTATGCGTATTTAGACCTGTAAGTGTAGGATCTAGTCAGATAAATTTTAG
CCTTCTAGGGCGTCATGATTTTCTTGATATTGATTACTATGTAGTTTCAT
CACTTATCTGATTATTTATTTCAGGTGTTTATCCCATCAGCTGCTTACAA
ACGCGGTGTCATCATCAGTCTACCCAAAGGGAAAGCCATGTTGAAATGTG
TTGTCCCCAAAGATGAAAACAAAAAATCTTCTAAAAAAGAAAAGATAGAT
GACAATTCATCTTTTATTTCGTTTATTACCAAGCCAACTGAAGCTCCAGC
AGGCGAGAAGAAAGTTATTTCTCCGAGTCTTGCTGATTTTTCTAACAATG
TGGAGCCACCAGAAGAGGCGGCGCCAGCCATAGCAAGCTTCACCAAAACA
GCCACTGAGAAGGAATCACCATTACCTCAAAGCGGTGTTAGTGGTGTAAC
CAAGTCTGAAAACACTGCTGTTGCGAAAGACAAGCAAGACGTAACCGATA
CTAATAGTGATGTTGTGACGCTTTCAACCGAGCCGGCAGCTGAAGCGGCG
CCAAAACCACAAGCCAATCTAAAGGAGCACATAGAATCAGCTATACAAAA
TATCAAATTCCCTTCCACCGAAGAAAAAGCACCAACGGCCGGTGTGACAC
AACAATCTTCAATAAGTGAAGCAAGTGCAGCAAAGCAACCGTCACCTGAA
ACACAAAACAAAAAATTTGCTGATAATTTTATGAAAGTCTTGGATAAAGA
TATGCTTGTTTCTCTTTACAAAATGGCTGTTCATGATATTATGAGTGAAC
TGCAAAACGCCAAAACAGTCGCTCATAACGAGGAAGCACCTTCAATGACT
GAAACTTCGAACCTCCAAAATAAGATGAAAATGATCAGCAATGAACGAAC
AGCTTTGGAGCAACAATATCCAGGGATTGCAGCCACTTTGATTGCACCAC
CAGATTCTGCTTTTAATATGCAGCAACAGAGAGCTGTAAAGAGATCGGAA
ACTCCTTCGAAGAGAGTAAAACTGATTGATACTGATCGTCCAAAGATTCG
TGCATCGCGACACGGAAACGTAAAGCAATTCGTAGCAGCTGATGAAAGCG
GATTCTTTGGTGATTTGGATCCTTCCAAACTTATTGATGATCATGAGAAA
GATTGCATTGAACCTACTTGCCAAAAGCAAAAAGACTTCATGAAAGGGGC
TTCTAAATATTTCGAAAGCTTGGATACTCTTGCCTTAGCTCCATATCAAA
ACTTCATGGGGAAGACTTTACAGAACAAACGAGAATCAATCGAAGTCGGT
CAAACACAACAACCAAGTACTATTGTGGAGCTGTTCGGTAAATTACCCAG
GGTTCCACTCAAAATTACTTTAAATCCCAAAGGACCGTTAGCCAAGCTGA
AAGAACCAATCACGATTGATTTGAAACCTCCAGATGGTAAACGATCAAAC
TCCAGAGCTGTTGCCATAACCAACAACCCTGCTGTTGCAGTGACTATCGC
AGATCGTATCTTTAAGGACGAACCAATGACTAAGGAAGACCAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054408-exon-scaffold_242-1575043694:1553910..1554037 | TCONS_00054408-exon-scaffold_242-1575043694:1553910..1554037 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1575043694:1553329..1553380 | TCONS_00054408-exon-scaffold_242-1575043694:1553329..1553380 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1575043694:1552897..1552937 | TCONS_00054408-exon-scaffold_242-1575043694:1552897..1552937 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1575043694:1551479..1551581 | TCONS_00054408-exon-scaffold_242-1575043694:1551479..1551581 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1575043694:1550874..1550924 | TCONS_00054408-exon-scaffold_242-1575043694:1550874..1550924 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1575043694:1549447..1550201 | TCONS_00054408-exon-scaffold_242-1575043694:1549447..1550201 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1575043694:1547742..1549163 | TCONS_00054408-exon-scaffold_242-1575043694:1547742..1549163 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1510915933:1553910..1554037 | TCONS_00054408-exon-scaffold_242-1510915933:1553910..1554037 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1510915933:1553329..1553380 | TCONS_00054408-exon-scaffold_242-1510915933:1553329..1553380 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1510915933:1552897..1552937 | TCONS_00054408-exon-scaffold_242-1510915933:1552897..1552937 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1510915933:1551479..1551581 | TCONS_00054408-exon-scaffold_242-1510915933:1551479..1551581 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1510915933:1550874..1550924 | TCONS_00054408-exon-scaffold_242-1510915933:1550874..1550924 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1510915933:1549447..1550201 | TCONS_00054408-exon-scaffold_242-1510915933:1549447..1550201 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1510915933:1547742..1549163 | TCONS_00054408-exon-scaffold_242-1510915933:1547742..1549163 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1491911889:1553910..1554037 | TCONS_00054408-exon-scaffold_242-1491911889:1553910..1554037 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1491911889:1553329..1553380 | TCONS_00054408-exon-scaffold_242-1491911889:1553329..1553380 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1491911889:1552897..1552937 | TCONS_00054408-exon-scaffold_242-1491911889:1552897..1552937 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1491911889:1551479..1551581 | TCONS_00054408-exon-scaffold_242-1491911889:1551479..1551581 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1491911889:1550874..1550924 | TCONS_00054408-exon-scaffold_242-1491911889:1550874..1550924 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1491911889:1549447..1550201 | TCONS_00054408-exon-scaffold_242-1491911889:1549447..1550201 | Clytia hemisphaerica | exon |
TCONS_00054408-exon-scaffold_242-1491911889:1547742..1549163 | TCONS_00054408-exon-scaffold_242-1491911889:1547742..1549163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_242 | supercontig | scaffold_242:1547742..1554037 - |
Blast
The following BLAST results are available for this feature:
|