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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054410 ID=TCONS_00054410|Name=TCONS_00054410|organism=Clytia hemisphaerica|type=transcript|length=2796bp gaaataagaattttaatcGAATTCTATATCAATTTTATACGAATcggaaa gattttaaaagtcaGTATCATAACCAAAAGAGCGTTTGCACGGAAAGTTT TCTGGtcaattttggtattttttgaaaatgtgtgtGGTtttatgaagaag aaaatgtctGCTACCATGTTGAAGATTTGGTTCTACACATCCCTGCTACT TTTTGTCGCCGTTGCTTCAtcaaaagGCAACAAGAGACATTTGGGTTTAC CACACGATCTTCCAGACattttgaaaaacgatAAAGTTGATGCAAATGAT TTGAAATATGCAACAGACGATTTTCGTGTTGATACTCATCCGAATCAAGG AGTCATCATTGAAAGTGAAGGCGTCGGAGGGTCTCATAAGAAAAGCCAAA CTCAAGAATCAAAAGACGCAACGTTTGACAAGAGACAGTTGGGCTCGCCA CGTGATCTTCCAGACATTTTGAAGAACGATAAAGTTGATGCAAATGATTT GAAATATGCAACAGACGATTTTCGTGTTGATACTCATCCGAATCAAGGAG TCATCATCGAAAGTGAAGGCGTCGGAGGACCTCATAAGAAAAGCCAAACC CTTCAGCCCAAAAAGAAGGGTAAAGAAATGACAGGAGTGAAGAAGCAATT TGGCACGGACTTAAACATGATGCCCGAATTACCGTTAGTTGGTCCACAAC CGGAAGAACATCTTACCGTAGAACCTCCTGCACCGATCGAACCTATCGAG CCGGTACACCCGATTGAACCGGTACCGATAGAACCGATGCCGGAACCAAT CATATCACATGTATCTGAACCAGTCCCTATTATCCAACAAGAGCCACCTC CAATTGTACACCACGAGGAACCTATCATTCATCATGAGCCTGTTCTCCTC CCAGTCCCCATCGCCGCCCCTGCTCCTCCACCGCCACCGCCCTGCACCGT ACATATCCCGGTTACCGTTCATTTGAAAGGAAAGCTTGCTATCAAGATGA AACATTGTCAGAAATGtgatttttcaaagaatatcgagTCTATTGGTCCT TTGAAAATCTCCTCTCTGAATCAATTAGAAGACAAACTAAAGGAACGTTT GGACAAATCGTTCAAAGTCAATGCTAAACGAGGAGGTAAAAAGAGAGGGA AATTACATAAAGCACATCACAAGAAATCAAAAGATATTAAAGGCACTAAA CGTGATCACCCGCCTGTTATTGATTACGACCGCCTAGACCGCGCGAACGA ACGCTTCATTTTTGGTAGCGATGGCGAGGAGGGCGAGGAAACTGACGTTC AAGGGAGCAAGAAAGATCAAGTGGATGAACCAGGACAAGACGCTTTCTTC AGGAAAGCTGTCaacattccaaagGTGTTTATCCCATCAGCTGCTTACAA ACGCGGTGTCATCATCAGTCTACCCAAAGGGAAAGCCATGTTGAAATGTG TTGTCCCCaaagatgaaaacaaaaaatcttctaaaaaagaaaagatagat GACAATTCATCTTTTATTTCGTTTATTACCAAGCCAACTGAAGCTCCAGC AGGCGAGAAGAAAGTTATTTCTCCGAGTCTTGCTGATTTTTCTAACAATG TGGAGCCACCAGAAGAGGCGGCGCCAGCCATAGCAAGCTTCACCAAAACA GCCACTGAGAAGGAATCACCATTACCTCAAAGCGGTGTTAGTGGTGTAAC CAAGTCTGAAAACACTGCTGTTGCGAAAGACAAGCAAGACGTAACCGATA CTAATAGTGATGTTGTGACGCTTTCAACCGAGCCGGCAGCTGAAGCGGCG CCAAAACCACAAGCCAATCTAAAGGAGCACATAGAATCAGCTATACAAAA TATCAAATTCCCTTCCACCGAAGAAAAAGCACCAACGGCCGGTGTGACAC AACAATCTTCAATAAGTGAAGCAAGTGCAGCAAAGCAACCGTCACCtgaa acacaaaacaaaaaatttgctgATAATTTTATGAAAGTCTTGGATAAAGA TATGCTTGTTTCTCTTTACAAAATGGCTGTTCATGATATTATGAGTGAAC TGCAAAACGCCAAAACAGTCGCTCATAACGAGGAAGCACCTTCAATGACT GAAACTTCGAACCTCCAAAATAAGATGAAAATGATCAGCAATGAACGAAC AGCTTTGGAGCAACAATATCCAGGGATTGCAGCCACTTTGATTGCACCAC CAGATTCTGCTTTTAATATGCAGCAACAGAGAGCTGTAAAGAGATCGGAA ACTCCTTCGAAGAGAGTAAAACTGATTGATACTGATCGTCCAAAGATTCG TGCATCGCGACACGGAAACGTAAAGCAATTCGTAGCAGCTGATGAAAGCG GATTCTTTGGTGATTTGGATCCTTCCAAACTTATTGATGATCATGAGAAA GATTGCATTGAACCTACTTGCCAAAAGCAAAAAGACTTCATGAAAGGGGC TTCTAAATATTTCGAAAGCTTGGATACTCTTGCCTTAGCTCCATATCAAA ACTTCATGGGGAAGACTTTACAGAACAAACGAGAATCAATCGAAGTCGGT CAAACACAACAACCAAGTACTATTGTGGAGCTGTTCGGTAAATTACCCAG GGTTCCActcaaaattactttaaatCCCAAAGGACCGTTAGCCAAgctga aagaaccaatcacgaTTGATTTGAAACCTCCAGATGGTAAACGATCAAAC TCCAGAGCTGTTGCCATAACCAACAACCCTGCTGTTGCAGTGACTATCGC AGATCGTATCTTTAAGGACGAACCAATGACTAAGGAAGACCAAAAC Run BLAST on NCBI transcript from alignment at scaffold_242:1547742..1554083- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054410 ID=TCONS_00054410|Name=TCONS_00054410|organism=Clytia hemisphaerica|type=transcript|length=6342bp|location=Sequence derived from alignment at scaffold_242:1547742..1554083- (Clytia hemisphaerica) GAAATAAGAATTTTAATCGAATTCTATATCAATTTTATACGAATCGGAAA
GATTTTAAAAGTCAGTATCATAACCAAAAGAGCGTTTGCACGGAAAGTTT
TCTGGTCAATTTTGGTATTTTTTGAAAATGTGTGTGGTTTTATGAAGAAG
AAAATGTCTGCTACCATGTTGAAGGTGAGGTCAAACTTTTGTTTTCTTTT
GTTTTCTTTTGTTCTTGCTATATATTTGTGGTACGTTTTGTTTGGAGCTC
TCGCATGGAAACGAAACACTAATAAAATTGTCAAATTTTATGTGATTATC
TTCCTGACTTAAATCCAACTATCCGAAAATTACCTCTCCTACGTCCTAGA
TAGAAACTTTTCGTGTGTTCATGATAAAGCTATGCACATGTTGTTCTAGC
TGTGTAAGAAAGCACAAAAATATGTTGATACCAATATACTATCTCCCCTT
GTGGGTAATCTCTGTGCCAGGGCGAATCTTACGTAAAACGTACCGTGGGG
AAGGGGGTTGTACTTTTGCGGTGTAAAGGGATTGGCCCTTTTTTAGTATG
GTATTACGGGACTTGACAAAAAAGAGACGGGAAAACAGATTTCCATAGAT
ATTGGGTCTCTGGCCCTGGCAGTGTTCTTTTTTACATACCTACACTCTGT
TCCGTTCTCAAAAGGAAAGTATAATTAATACACCATGCGATTCCTACTTT
TAGATTTGGTTCTACACATCCCTGCTACTTTTTGTCGCCGTTGCTTCATC
AAAAGGTAATTATTTTCAATTTGGGCTAAAGTCCTCAGGATCTCAGGATC
TCAAAAGCTCATAATTCGTATTCCAATAAGGCTGAGAATATAGCCTAGAA
GCCACTGAACCCCTCCAAAATCGAAATATCCAATGAAATAAAGTGGAACT
AGCCGACTGATAGTGTGAAGGTTTCGATCACAAACTTACACTGCAATGGA
CTGTGTTCGAATCCCAAGCACTTTCAGGCAGGGTGCTAGGGGAATATGGT
GATAGACTCTCACTCATTAAGTGGAATTACTAAATTGGCAATTCTCACCC
GAACTTTAAATTCTGAGCAACGTTAAAATGCACAAAATTCTCAATATATT
TTGACCAAGATTGCAGAAACAATACATTTAAGTTTTTTATTATCAGGCAA
CAAGAGACATTTGGGTTTACCACACGATCTTCCAGACATTTTGAAGAACG
ATAAAGTTGATGCAAATGATTTGAAATATGCAACAGACGATTTTCGTGTT
GATACTCATCCGAATCAAGGAGTCATCATCGAAAGTGAAGGCGTCGGAGG
GCCTCATAAGAAAAGCCAAACTCAAAAGTTAAAAGGTTTATCCATGTTTT
TGTTTAACCCTTTAACTGCAGTTACTTGTTTGCTACCAAACTGAGGTCGT
GCGCAGACCAGGGAGATACTAGGATTCAGAGCTGACGGGTGCGTGTCGCC
CGACTTCTGCCGCGCCTACTTCGCCGACCATAAAATGCTGAGTGGGTAGT
GGCCTTTAGTGAGACTAAAAAGTAGGGAAACCTTTGTGAAATTTACAACC
CTGCTTGGGACTAATTTGACCTAATTTTGATCTTTCAAGGAGCAAATCCT
TGAAATTTTCCGATTTCTCCGACCCTTAGTGGGACTGAGATTTAATTTTC
TGACCTTCTCAATCTTAATAGGAACTGCCAGGTTCCAAAAAGACACCCTT
AAGGATGGCACATACCTGTACCCTTCACTTGCCTTGGAACCCCTCTGGGC
TCAGCTATGCGTGTTGGCACATTATCATATGTAGGTCTTCAAGTTCCGTT
TGCGTATGTGTGGTTTTTTGACAAGCCTCCACTATCTAGATTAAAGGACC
ACCCCCGTAACAGAATATCTTTCTTTTTATTTCTTTCGTAGAAATCACAG
GCAACAAGAGACATTTTGGAATGCCACACGATCTTCCAAATATTTTGAAG
AACGATAAAGTTGATGCAAATGATTTGAAATATGCAACAGACGATTTTCG
TGTTGATACTCATCCGAATCAAGGAGTCATCATAGAAAGTGAAGGTGTCG
GAGGACCTCATAAGAAAAGCCAAACTCGGAAATCAAAAGGTACGTTTTTC
TGTAGTTTGTTTTGGCTTTCGTACAGTGTCCTCTTTTTATGGAACATTAG
ACGCTTCCTGGTCTAGGATGGGCGGAAAATCTGGTGGCTCAAATAGTGAT
TACCTGAAGGCGTTTTAAAGCATCGGCCCGTAAAAACTTAAAATGTTATC
AATCGCGTGTGAATGTGAGTATTTTGTTGAAATTCCACGATCTATAAGTT
CAAAGACCCTAAAATCCATCGAATCATCACAGAATACGGTCAAAGAAAAA
TTACTTTGATAATATCTGCGAAATTGGTTTAACCTCGACTTTCCAACTAA
TATCTGAATCCTTTCTTTAAATTCAAAATTTAACTTTTTGGCTATTTTGT
AGATGTCACGTTCAACAAGAGACATTTGGGAATGCCTCACGATCTTCCAG
ACATTTTGAAAAACGATAAAGTTGATGCAAATGATTTGAAATATGCAACA
GACGATTTTCGTGTTGATACTCATCCGAATCAAGGAGTCATCATTGAAAG
TGAAGGCGTCGGAGGGTCTCATAAGAAAAGCCAAACTCAAGAATCAAAAG
GTATTTTCACATCTTTTTGTCGTTTATTTTGGCTTTCGTTTTAGAAGATT
AGCTAGTTCGCACTTTGAAACTGCTATTTTTGATACCGCCTGATAAAGGA
CGGGCAGGAAAAGCGGTAAAAGCGGTAAAAGTTATAATATTATCGGTCGT
GTGTGTATGTGGGTATTTTGTTAAAGCTCGAGGCTCGAAATTCGAGAATC
CTAAAATCTCTATCCAATTTTCATCGAATTTGGTCAGAGAACAATTACTT
TCATTATGGTCTTTGTGAATTTTGTTTAACCTCAACTTTCCGTCATAGTA
TCTAAATCCTTTATACTATTTCCAGATTTTTCCTCTTTGACCGTTCTTTT
TCGTAGACGCAACGTTTGACAAGAGACAGTTGGGCTCGCCACGTGATCTT
CCAGACATTTTGAAGAACGATAAAGTTGATGCAAATGATTTGAAATATGC
AACAGACGATTTTCGTGTTGATACTCATCCGAATCAAGGAGTCATCATCG
AAAGTGAAGGCGTCGGAGGACCTCATAAGAAAAGCCAAACCCTTCAGCCC
AAAAAGAAGGGTAAGTTTACATTTCTTTAACGACAGACGTTCGTAGTGCT
AAAACACTGAAGAACATGCTTTCAAAATGCTTGTCTGAAAGATTCTAGCA
TCAGGTTCAAATTTCTGGCCAGATGATTGGAGAAATTGTTCTCGAAACGT
AGCCGAAAGTAACTCTCGTGATTCAAGTCGTGCTAAACCTTCAATATAGA
TATTAGCTCTGTCTTCTAAAATAAGTACCATTTAATTTCGCGATTTAGCC
ATTTTGGTGTGTTTCGCGGAATTTAATTTCGCGAATTACGCCCAAATTCG
CGAAATTAAATTCCGCGAAAATTTCTTCCGCAAAAATTTCTTCCCTTAAG
GTAATAGTTATCGGACAATTGCGAGTACAATATGAGAAATATTTTACGAG
TTCCGAGATTTTTCCGTATAATATTTTCCGAGTCTTTAGAGGAGGAAAAT
ATACGGAAAATCTGGAACGCGTGAAATAATTCTATATTGTACGAGCAATA
GACGATATCGGCTTAACGAAATTCTCTCCGAATGATTACCCATGATGCAT
TGCGCAAAAAAATTCAGTAAGTCAATATTGTCCGTGAATTTTTTTGCGCA
ATGCATTATGGGTAATCATTCGGGGAGAATTCAGAAAGCCGATATCGTCT
ATTGTCTAATAACTATTTTTCTATGACCTTAGGTAAAGAAATGACAGGAG
TGAAGAAGCAATTTGGCACGGACTTAAACATGATGCCCGAATTACCGTTA
GTTGGTCCACAACCGGAAGAACATCTTACCGTAGAACCTCCTGCACCGAT
CGAACCTATCGAGCCGGTACACCCGATTGAACCGGTACCGATAGAACCGA
TGCCGGAACCAATCATATCACATGTATCTGAACCAGTCCCTATTATCCAA
CAAGAGCCACCTCCAATTGTACACCACGAGGAACCTATCATTCATCATGA
GCCTGTTCTCCTCCCAGTCCCCATCGCCGCCCCTGCTCCTCCACCGCCAC
CGCCCTGCACCGTACATATCCCGGTTACCGTTCATTTGAAAGGAAAGCTT
GCTATCAAGATGAAACATTGTCAGAAATGTGATTTTTCAAAGAATATCGA
GTCTATTGGTCCTTTGAAAATCTCCTCTCTGAATCAATTAGAAGACAAAC
TAAAGGAACGTTTGGACAAATCGTTCAAAGTCAATGCTAAACGAGGAGGT
AAAAAGAGAGGGAAATTACATAAAGCACATCACAAGAAATCAAAAGATAT
TAAAGGCACTAAACGTGATCACCCGCCTGTTATTGATTACGACCGCCTAG
ACCGCGCGAACGAACGCTTCATTTTTGGTAGCGATGGCGAGGAGGGCGAG
GAAACTGACGTTCAAGGGAGCAAGAAAGATCAAGTGGATGAACCAGGACA
AGACGCTTTCTTCAGGAAAGCTGTCAACATTCCAAAGGTATTTCTACCTT
ATACATACTTTTTGTCTTCGGCTTAAGTTTGCTTTCACCCACTGGAACCT
TAGTAATTCAAACTAATCATAACTCGTTGGATAGATTGTTTTCCTTAAAT
TTCCAGTTATCATGGTCTTTGTGCGAAGAGCTTACGATTTCAGAATTTAT
GCGTATTTAGACCTGTAAGTGTAGGATCTAGTCAGATAAATTTTAGCCTT
CTAGGGCGTCATGATTTTCTTGATATTGATTACTATGTAGTTTCATCACT
TATCTGATTATTTATTTCAGGTGTTTATCCCATCAGCTGCTTACAAACGC
GGTGTCATCATCAGTCTACCCAAAGGGAAAGCCATGTTGAAATGTGTTGT
CCCCAAAGATGAAAACAAAAAATCTTCTAAAAAAGAAAAGATAGATGACA
ATTCATCTTTTATTTCGTTTATTACCAAGCCAACTGAAGCTCCAGCAGGC
GAGAAGAAAGTTATTTCTCCGAGTCTTGCTGATTTTTCTAACAATGTGGA
GCCACCAGAAGAGGCGGCGCCAGCCATAGCAAGCTTCACCAAAACAGCCA
CTGAGAAGGAATCACCATTACCTCAAAGCGGTGTTAGTGGTGTAACCAAG
TCTGAAAACACTGCTGTTGCGAAAGACAAGCAAGACGTAACCGATACTAA
TAGTGATGTTGTGACGCTTTCAACCGAGCCGGCAGCTGAAGCGGCGCCAA
AACCACAAGCCAATCTAAAGGAGCACATAGAATCAGCTATACAAAATATC
AAATTCCCTTCCACCGAAGAAAAAGCACCAACGGCCGGTGTGACACAACA
ATCTTCAATAAGTGAAGCAAGTGCAGCAAAGCAACCGTCACCTGAAACAC
AAAACAAAAAATTTGCTGATAATTTTATGAAAGTCTTGGATAAAGATATG
CTTGTTTCTCTTTACAAAATGGCTGTTCATGATATTATGAGTGAACTGCA
AAACGCCAAAACAGTCGCTCATAACGAGGAAGCACCTTCAATGACTGAAA
CTTCGAACCTCCAAAATAAGATGAAAATGATCAGCAATGAACGAACAGCT
TTGGAGCAACAATATCCAGGGATTGCAGCCACTTTGATTGCACCACCAGA
TTCTGCTTTTAATATGCAGCAACAGAGAGCTGTAAAGAGATCGGAAACTC
CTTCGAAGAGAGTAAAACTGATTGATACTGATCGTCCAAAGATTCGTGCA
TCGCGACACGGAAACGTAAAGCAATTCGTAGCAGCTGATGAAAGCGGATT
CTTTGGTGATTTGGATCCTTCCAAACTTATTGATGATCATGAGAAAGATT
GCATTGAACCTACTTGCCAAAAGCAAAAAGACTTCATGAAAGGGGCTTCT
AAATATTTCGAAAGCTTGGATACTCTTGCCTTAGCTCCATATCAAAACTT
CATGGGGAAGACTTTACAGAACAAACGAGAATCAATCGAAGTCGGTCAAA
CACAACAACCAAGTACTATTGTGGAGCTGTTCGGTAAATTACCCAGGGTT
CCACTCAAAATTACTTTAAATCCCAAAGGACCGTTAGCCAAGCTGAAAGA
ACCAATCACGATTGATTTGAAACCTCCAGATGGTAAACGATCAAACTCCA
GAGCTGTTGCCATAACCAACAACCCTGCTGTTGCAGTGACTATCGCAGAT
CGTATCTTTAAGGACGAACCAATGACTAAGGAAGACCAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00054410-exon-scaffold_242-1575043694:1553910..1554083 | TCONS_00054410-exon-scaffold_242-1575043694:1553910..1554083 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1575043694:1553329..1553380 | TCONS_00054410-exon-scaffold_242-1575043694:1553329..1553380 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1575043694:1552897..1552937 | TCONS_00054410-exon-scaffold_242-1575043694:1552897..1552937 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1575043694:1551434..1551581 | TCONS_00054410-exon-scaffold_242-1575043694:1551434..1551581 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1575043694:1550874..1551077 | TCONS_00054410-exon-scaffold_242-1575043694:1550874..1551077 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1575043694:1549447..1550201 | TCONS_00054410-exon-scaffold_242-1575043694:1549447..1550201 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1575043694:1547742..1549163 | TCONS_00054410-exon-scaffold_242-1575043694:1547742..1549163 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1510915933:1553910..1554083 | TCONS_00054410-exon-scaffold_242-1510915933:1553910..1554083 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1510915933:1553329..1553380 | TCONS_00054410-exon-scaffold_242-1510915933:1553329..1553380 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1510915933:1552897..1552937 | TCONS_00054410-exon-scaffold_242-1510915933:1552897..1552937 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1510915933:1551434..1551581 | TCONS_00054410-exon-scaffold_242-1510915933:1551434..1551581 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1510915933:1550874..1551077 | TCONS_00054410-exon-scaffold_242-1510915933:1550874..1551077 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1510915933:1549447..1550201 | TCONS_00054410-exon-scaffold_242-1510915933:1549447..1550201 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1510915933:1547742..1549163 | TCONS_00054410-exon-scaffold_242-1510915933:1547742..1549163 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1491911889:1553910..1554083 | TCONS_00054410-exon-scaffold_242-1491911889:1553910..1554083 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1491911889:1553329..1553380 | TCONS_00054410-exon-scaffold_242-1491911889:1553329..1553380 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1491911889:1552897..1552937 | TCONS_00054410-exon-scaffold_242-1491911889:1552897..1552937 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1491911889:1551434..1551581 | TCONS_00054410-exon-scaffold_242-1491911889:1551434..1551581 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1491911889:1550874..1551077 | TCONS_00054410-exon-scaffold_242-1491911889:1550874..1551077 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1491911889:1549447..1550201 | TCONS_00054410-exon-scaffold_242-1491911889:1549447..1550201 | Clytia hemisphaerica | exon |
TCONS_00054410-exon-scaffold_242-1491911889:1547742..1549163 | TCONS_00054410-exon-scaffold_242-1491911889:1547742..1549163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_242 | supercontig | scaffold_242:1547742..1554083 - |
Blast
The following BLAST results are available for this feature:
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