|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054419 ID=TCONS_00054419|Name=TCONS_00054419|organism=Clytia hemisphaerica|type=transcript|length=1357bp
AAAAGGTGAAAACTGCAGCCAACAGATTGTTCGATTCAGTAAAAGcaaca
acacaaaaaatcaTCGAACTATACAAACCTCAAATCCTTGCTGCTttgga
aaatgtccaaaaagtTGTCATCAAAGGAGCAAAAGATTTGATCATCGAAG
TTGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACATCA
GATGGCAAAGATCACCCAGAGTTTGCTGTTGTCTCATTTTCAATCTATGA
AGAAATTGATAGCTCTTCCATTCCAAGAATCAATTTTGTTACCGATGCAT
GGAAAAAAGTCACAGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAAC
CAAACCAGAGCTTTGATCGAGAAATACAAACCAAAAGTAACAGATGCTTT
GACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTG
AAATCATAGGTGATATTGTCAAAATTGTTGTTGGAGATCTTTCAGAGGAC
AAAATTGTGTTGGccaaaagaaacattttaaccGATTTATGGCAAAAAGT
GAAATCCGCAGCTCAACACTTATCATCTCAAATCAGAACATACGCCGAAA
AGATGCTTCAGAAATACCGACCACAGATCATGACCACCTTAAAGGTTGTT
GGTGAAGTCGTCATCGATCAAGTCCGCAAAATCATCATTCGCATTATCAA
AGATGGTATTGTAGGTATTTTCGTGAACGGTGAGGCAGTGACATCTGATG
GCAGTGCTTTTATGTTGCCAGAGAAAAGGATTTACGCTGTTTTGGATCAA
TCACCACCTCAAATCAACATCTTCAAGGATGCTTGGTCAAAGGTCAAGGC
TTTCGTTGAAGACAAGGTGAACAAGATCAGCTCAAGCGTGAAAGCCATCA
TCGAGAAATATCGTCCACAGATTGAAGAAGGTTTGGAGAAAGCCAAGAAG
ATCGTCATCAAACACGGAAAATTGATCATTATCGAAATCATTGGTGTCGT
CATCTCCATCATCGTTCTTTAAACGTCCTGATAACGTccataacgttaga
tgaatgttgaaacaacgtcctGCTAACGTCCATCTCTTCTTATCAATACC
GATTCTATTGGAGAAGAAgatggaaagaaattttgatttatttttaaata
tatttttgtgttttttagtATTCTTGTCGATTCTATTTGAAGATTCGTCA
CTTTTTTAGGAACAAAAAAGAGAAATAGTCTTGTTAAATAAATGGTGTTC
GGTAGTAATCTCCCAACTCCCAATATTTTTCCAACAACTTCAACTTTTAC
CTCAAGTTAAtgtaaattttcccttttttcgaGTGTCGCGTATAGAATTT
GTCGTca Run BLAST on NCBI transcript from alignment at scaffold_242:1602410..1609935- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054419 ID=TCONS_00054419|Name=TCONS_00054419|organism=Clytia hemisphaerica|type=transcript|length=7526bp|location=Sequence derived from alignment at scaffold_242:1602410..1609935- (Clytia hemisphaerica)
AAAAGGTGAAAACTGCAGCCAACAGATTGTTCGATTCAGTAAAAGCAACA
ACACAAAAAATCATCGAACTATACAAACCTCAAATCCTTGCTGCTTTGGA
AAATGTCCAAAAAGTTGTCATCAAAGGAGCAAAAGATTTGATCATCGAAG
TTGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACATCA
GATGGCAAAGATCACCCAGAGTTTGCTGTTGTCTCATTTTCAATCTATGA
AGAAATTGATAGCTCTTCCATTCCAAGAATCAATTTTGTTACCGATGGTA
AGTTATTTTGACGATTCGAACTTGTTTTCCTGTTAGTCTCTGTAATAAAG
AAAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCATAATA
TTAATTTTATCTTCAAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCG
AAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAA
TACAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATAAT
TGACGAGGGAAAGAGAATCGTTATTGAAATCATCGGAGATATTGTCAAGA
TTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAAAGAGCTTGCTGCT
CTTTCCGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTCTGAATG
TAAGATAATATTTTATTCACAAAAACACAAATCCTATCCGGGGTCTAAGA
TTTCTCAAATAATTCCGGTTTTTAAAGAGCCAAAAAAAACTTTCCCAATG
AGAAAACGTTATAGTAGTCTTTAAAACCTTTCAAAGAAATCTCTATCAAT
TTTCTCTTTAGTATGGGAAAAGGTGAAAGCTGCAGCCAACAGCTTGGTCG
ATTCAGTAAAAGCTACAACACAAAAAATCATCGAACAATACAAACCTCAA
ATCCTTGCTGCTTTGGAAAATGTCCAAAAAGTTGTCATCAAAGGAGTCAA
AGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGATG
GTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTGTT
TCATTTTCAATCTTTGAAGTAATTGATGGCTCTTCCATTCCAAGAATCAA
CTTTGTTACCGATGGTAAGTTATTTTGACGATTCAAACTTGTTTTCCTGT
TTGTCTCTGTAATAAAGAAAATAATCAAAATAGATCAATTGCAAATACCT
TTTTCAAAATCATATAATATTAATTCCATGTTCAAATTTCAGCATGGAAG
AAAGTCACCGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAAC
CAGAGCTTTGGTCGAGAAATACAAACCAAAAGTAACAGATGCTTTGACCA
GAGTCAAGAAAGTGATCATTGACGAGGGAAAAAGAATCGTTATTGAAATC
ATTGGTGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGAT
TGTTAGAGAGCTTGCTGCTCTTCCAGAAGATTCTGAATTGATGGATGCTG
AATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACACAAA
TCCTATCCGGGGTCTAAGATTACTCAAATAATTCCGGTTTTTAAAGAGCC
AAAAAAACTTTCTCAATTAGAAAACGTTATAGTAGTCTTGAAAACCTTTC
AAATAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAAACTG
CAGCCAACAGCTTGGTCGATTCAGTAAAAGCAACAACACAAAAAATCATC
GAACAATACAAACCTCAAATACTTGCTGCTTTGGAAAATGTCCAGAAAGT
TATCATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATTG
TCAAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCAC
CCAGAGTTTGCTGTTGTCTCATTTTCAATCTATGAAGAAATTGATAGCTC
TTCCATTCCAAGAATCAATTTTGTTACCGATGGTAAGTTATTTTGACGAT
TCAAACTTGTTTTCCTGTTAGTCTCTGTAATAAAGAAAATAATCAAAATA
GATAAATTGCAAATACCTTTTTCAAAATCATAATACTAATTTCATCTTCA
AATTTCAGCATGGAAGAAAGTCACTGATGCTTTCGAAAAAGCTGGAGACA
AGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATATAAACCAAAAGTA
ACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAGAG
AATCGTTATTGAAATCATTGGTGATATTGTCAAGATTGTTGTTGAAGATC
TTCAAGAGGATGAGATTGTTAGAGAGCTTGCTGCTCTTTCAGAAGATTCT
GAATTGATGGATGCTGAATTCTTCTTCTCTGAATGTAAGATAATATTTTA
TTCACAAAAACACAAATCCTGCTCTCTTGATCTAAAGTTATTAGAATTAC
TCCGATTTTAAAGAGCCAAAAAAACATTCCCAATGAGAAAAAATTATAGT
AGTCTTGAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATG
GGAAAAGGTGAAATCTGCAGCTAACAGATTGATCGACTCAGTAAAAGCAA
CAACACAAAAAATCATCGAACAGTACAAACCTCAAATCCTTGCTGCTTTG
GAAAATGTCCAAAAAGTTGTCATCAAAGGAGCAAAAGATTTGATCATCGA
AGTTGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACAT
CAGATGGCAAAGATCACCCAGAGTTTGCTGTTGTCTCATTTTCAATCTAT
GAAGAAATTGATAGCTCTTCCATTCCAAGAATCAATTTTGTTACCGATGG
TAAGTTATTTTGACGATTCGAACTTGTTTTCCTGTTAGTCTCTGTAATAA
AGAAAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCATAA
TATTAATTTCATCTTCAAATTTCAGCATGGAAGAAAGTCACCGATGCTTT
CGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGA
AATACAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATC
ATTGACGAGGGAAAGAGAATCGTTATTGAAATCATCGGAGATATTGTCAA
GATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAAAGAACTTGCTG
CTCTTTCAGAAGATTCTGAATTGATGGATGCTGAATTCTTTTTCTCTGAA
TGTAAGATAATATTTTATTCACAAAAACACAAATCCTATCCGGGGTCTAA
TATTTCTCAAATAATTCCGGTTTTTAAAGAGCCAAAAAAACTTTCCCAAT
GAGAAAACGTTATAGTAGTCTTTAAAACCTTTCAAAGAAATCTCTATCAA
TTTTCTCTTTAGTATGGGAAAAGGTGAAAGCTGCAGCCAACAGCTTGGTC
GATTCAGTAAAAGCTACAACACAAAAAATCATCGAACAATACAAACCTCA
AATCCTTGCTGCTTTGGAAAATGTCCAAAAAGTTGTCATCAAAGGAGTCA
AAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGAT
GGTGTATCTTCAACATCAGATGGCAAAGACCATCCAGAGTTTGCTATTGT
CTCATTTTCAATCTTTGAAGAGATTGATGGCTCTTCCATTCCAAGAATCA
ACTTTGTTACTGATGGTAAGTTATTTTGACGATTCAAACTTGTTTTCCTG
TTTGTCTGTGTAATAAAGAAAATAATCAAAATAGATCAATTGCAAATACC
TTTTTCAAAATCATATAATATTAATTCCATCTTCAAATTTCAGCATGGAA
AAAAGTCACTGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAA
CCAGAGCTTTGATCGAGAAATATAAACCAAAAGTAACAGATGCTTTGACC
AGAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAAT
CATTGGTGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGA
TTGTTAGAGAGCTTGCTGCTCTTTCAGAAGATTCTGAATTGATGGATGCT
GAATTCTTCTTCTCTGAATGTAAGANGATATTGTCAAGATTGTTGTTGAA
GATCTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCCGAAGA
TTCTGAATTGATGGATGCTGAATTCTTCTTCTCTGAATGTAAGATAATAT
TTTATTCACAAAAACACAAATTCTATCCGGGTTCTGTTCTCTTAAATAAT
TCCGGTTTTTAAAGAGCCAAAAAAACTTTCCCAATGAGAAAACGTTATAG
TAGCCTTGAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTAT
GGGAAAAGGTGAAAACTGCAGCCAACAGATTGGTCGATTCAGTAAAAGCA
ACAAAACAAAAAATCATCGAACAATACAAACCTCAAATCCTTGCTGCTTT
GAAAAATGTCCAGAAAGTTATCATCAAAGGAGCAAAAGATTTGATCATCG
AAGTTGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACA
TCAGATGGCAAAGATCACCCAGAGTTTGCTGTTGTTTCATTTTCAATCTT
TGAAGTAATTGATGGCTCTTCCATTCCAAGAATCAACTTTGTTACCGATG
GTAAGTTATTTTGACGATTCAAACTTGTTTTCCTGTTTGTCTCTGTAATA
AAGAAAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCATA
TAATATTAATTCCATGTTCAAATTTCAGCATGGAAGAAAGTCACCGATGC
TTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGGTCG
AGAAATACAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTG
ATCATTGACGAGGGAAAAAGAATCGTTATTGAAATCATTGGTGATATTGT
CAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAGAGAGCTTG
CTGCTCTTCCAGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTCT
GAATGTAAGATAATATTTTATTCACAAAAACACAAATCCTATCCGGGGTC
TAAGATTACTCAAATAATTCCGGTTTTTAAAGAGCCAAAAAAACTTTCTC
AATTAGAAAACGTTATAGTAGTCTTGAAAACCTTTCAAAGAAATCTCTAT
CAATTTTCTCTTTAGTATGGGAAAAGGTGAAAACTGCAGCCAACAGCTTG
GTCGATTCAGTAAAAGCAACAACACAAAAAATCATCGAACAATACAAACC
TCAAATACTTGCTGCTTTGGAAAATGTCCAGAAAGTTATCATCAAAGGAG
CAAAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACT
GATGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGT
TGTCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAA
TCAATTTTGTTACCGATGGTAAGTTATTTTGACGATTCAAACTTGTTTTC
CTGTTAGTCTCTGTAATAAAGAAAATAATCAAAATAGATCAATTGCAAAT
ACCTTTTTCAAAATCATAATATTAATTTCATCTTCAAATTTCAGCATGGA
AAAAAGTCACAGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAA
ACCAGAGCTTTGATCGAGAAATACAAACCAAAAGTAACAGATGCTTTGAC
CAGAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAA
TCATAGGTGATATTGTCAAAATTGTTGTTGGAGATCTTTCAGAGGACAAA
ATTGTGTTGGCCAAAAGAAACATTTTAACCGATTGTGAGTACTACATAAT
CCTAACATTTAAATAATATCTAAAGTAATATTCCAAACTAGATACCATCT
TCAAATTGAGTTGATTCTTTGACAACATCTTTGAGTATAAATCTAATAAT
TTCAGAAAATTACAGTCGAATCTCCATAACTCGAACCTCCATCCTTTGAA
TGTCTCCTTAACTCGAACCAGTTTACCGTTCCTTTCAGATAAGAAACCCC
AGTAAACAATTCACCATAACTCGAACTTTCCATAACTCGAACTAATTTGC
TTGCCCTGTGCGTGTTCGAGTTATGAAGAATCAAAAGACCTTTTTATAAA
TTACGTCACAAACAACACTTGCCTCGTTTTAAAATTATTGCCATGGTGAT
TAACTCCCAGCGGATTTTATTAAAACTAATTTCTATTCATAAAAGGATCA
CCACGGTAATTATTTGAATACGAGGCAAGTGATGTTCCTGAGGTAATTTA
TGAAAAAGTCTATTGTATCTAGAAAAATATGTTCTTAAGCTAAAATAATG
TGTCCTTTAATTTTGTAGTATGGCAAAAAGTGAAATCCGCAGCTCAACAC
TTATCATCTCAAATCAGAACATACGCCGAAAAGATGCTTCAGAAATACCG
ACCACAGATCATGACCACCTTAAAGGTTGTTGGTGAAGTCGTCATCGATC
AAGTCCGCAAAATCATCATTCGCATTATCAAAGATGGTATTGTAGGTATT
TTCGTGAACGGTGAGGCAGTGACATCTGATGGCAGTGCTTTTATGTTGCC
AGAGAAAAGGATTTACGCTGTTTTGGATCAATCACCACCTCAAATCAACA
TCTTCAAGGATGGTAAGTGTTTATAACTTTCACAAAAAATCGATGGGGAT
CGATGGTCGATAAAGACATAAATGTTGTCATCAATTTCATAACTGTTCAA
TTTAATCTCCCAGATTTAATTAGAAGCAGTTCAACGAGTACCAACTATAT
AGTTACCATTAAATGCCAACAAGTTTTGAATCCATTTCACTTTCTTCCAG
CTTGGTCAAAGGTCAAGGCTTTCGTTGAAGACAAGGTGAACAAGATCAGC
TCAAGCGTGAAAGCCATCATCGAGAAATATCGTCCACAGATTGAAGAAGG
TTTGGAGAAAGCCAAGAAGATCGTCATCAAACACGGAAAATTGATCATTA
TCGAAATCATTGGTGTCGTCATCTCCATCATCGTTCTTTAAACGTCCTGA
TAACGTCCATAACGTTAGATGAATGTTGAAACAACGTCCTGCTAACGTCC
ATCTCTTCTTATCAATACCGATTCTATTGGAGAAGAAGATGGAAAGAAAT
TTTGATTTATTTTTAAATATATTTTTGTGTTTTTTAGTATTCTTGTCGAT
TCTATTTGAAGATTCGTCACTTTTTTAGGAACAAAAAAGAGAAATAGTCT
TGTTAAATAAATGGTGTTCGGTAGTAATCTCCCAACTCCCAATATTTTTC
CAACAACTTCAACTTTTACCTCAAGTTAATGTAAATTTTCCCTTTTTTCG
AGTGTCGCGTATAGAATTTGTCGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054419-exon-scaffold_242-1575043694:1609639..1609935 | TCONS_00054419-exon-scaffold_242-1575043694:1609639..1609935 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1575043694:1603952..1604191 | TCONS_00054419-exon-scaffold_242-1575043694:1603952..1604191 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1575043694:1603124..1603417 | TCONS_00054419-exon-scaffold_242-1575043694:1603124..1603417 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1575043694:1602410..1602935 | TCONS_00054419-exon-scaffold_242-1575043694:1602410..1602935 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1510915933:1609639..1609935 | TCONS_00054419-exon-scaffold_242-1510915933:1609639..1609935 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1510915933:1603952..1604191 | TCONS_00054419-exon-scaffold_242-1510915933:1603952..1604191 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1510915933:1603124..1603417 | TCONS_00054419-exon-scaffold_242-1510915933:1603124..1603417 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1510915933:1602410..1602935 | TCONS_00054419-exon-scaffold_242-1510915933:1602410..1602935 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1491911889:1609639..1609935 | TCONS_00054419-exon-scaffold_242-1491911889:1609639..1609935 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1491911889:1603952..1604191 | TCONS_00054419-exon-scaffold_242-1491911889:1603952..1604191 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1491911889:1603124..1603417 | TCONS_00054419-exon-scaffold_242-1491911889:1603124..1603417 | Clytia hemisphaerica | exon |
| TCONS_00054419-exon-scaffold_242-1491911889:1602410..1602935 | TCONS_00054419-exon-scaffold_242-1491911889:1602410..1602935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1602410..1609935 - |
Blast
The following BLAST results are available for this feature:
|
