TCONS_00054423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054423
Unique NameTCONS_00054423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054423 ID=TCONS_00054423|Name=TCONS_00054423|organism=Clytia hemisphaerica|type=transcript|length=642bp
CGACTCAGTAAAAGcaacaacacaaaaaatcaTCGAACAGTACAAACCTC
AAATCCTTGCTGCTttggaaaatgtccaaaaagtTGTCATCAAAGGAGCA
AAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGA
TGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTG
TCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAATC
AATTTTGTTACCGATGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGC
TGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAAC
CAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAG
GGAAAGAGAATCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGT
TGAAGATCTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAG
AAGATTCTGAATTGATGGATGCTGAATTCTTTTTCTCTGAATTATGGGAA
AAGGTGAAAACTGCAGCCAACAGATTGGTCGATTCAGtaaaagcaacaaa
acaaaaaatcatcgAACAATACAAACCTCAAATCCTTGCTGC
Run BLAST on NCBI

transcript from alignment at scaffold_242:1605389..1607302-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054423 ID=TCONS_00054423|Name=TCONS_00054423|organism=Clytia hemisphaerica|type=transcript|length=1914bp|location=Sequence derived from alignment at scaffold_242:1605389..1607302- (Clytia hemisphaerica)
CGACTCAGTAAAAGCAACAACACAAAAAATCATCGAACAGTACAAACCTC
AAATCCTTGCTGCTTTGGAAAATGTCCAAAAAGTTGTCATCAAAGGAGCA
AAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGA
TGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTG
TCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAATC
AATTTTGTTACCGATGGTAAGTTATTTTGACGATTCGAACTTGTTTTCCT
GTTAGTCTCTGTAATAAAGAAAATAATCAAAATAGATCAATTGCAAATAC
CTTTTTCAAAATCATAATATTAATTTCATCTTCAAATTTCAGCATGGAAG
AAAGTCACCGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAAC
CAGAGCTTTGATCGAGAAATACAAACCAAAAGTAACAGATGCTTTGACCA
GAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAATC
ATCGGAGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGAT
TGTTAAAGAACTTGCTGCTCTTTCAGAAGATTCTGAATTGATGGATGCTG
AATTCTTTTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACACAAA
TCCTATCCGGGGTCTAATATTTCTCAAATAATTCCGGTTTTTAAAGAGCC
AAAAAAACTTTCCCAATGAGAAAACGTTATAGTAGTCTTTAAAACCTTTC
AAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAAGCTG
CAGCCAACAGCTTGGTCGATTCAGTAAAAGCTACAACACAAAAAATCATC
GAACAATACAAACCTCAAATCCTTGCTGCTTTGGAAAATGTCCAAAAAGT
TGTCATCAAAGGAGTCAAAGATTTGATCATCGAAGTTGTCAATGGAATTG
TCAAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGACCAT
CCAGAGTTTGCTATTGTCTCATTTTCAATCTTTGAAGAGATTGATGGCTC
TTCCATTCCAAGAATCAACTTTGTTACTGATGGTAAGTTATTTTGACGAT
TCAAACTTGTTTTCCTGTTTGTCTGTGTAATAAAGAAAATAATCAAAATA
GATCAATTGCAAATACCTTTTTCAAAATCATATAATATTAATTCCATCTT
CAAATTTCAGCATGGAAAAAAGTCACTGATGCTTTCGAAAAAGCTGGAGA
CAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATATAAACCAAAAG
TAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAG
AGAATCGTTATTGAAATCATTGGTGATATTGTCAAGATTGTTGTTGAAGA
TCTTCAAGAGGATGAGATTGTTAGAGAGCTTGCTGCTCTTTCAGAAGATT
CTGAATTGATGGATGCTGAATTCTTCTTCTCTGAATGTAAGANGATATTG
TCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAAAGAACTT
GCTGCTCTTTCCGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTC
TGAATGTAAGATAATATTTTATTCACAAAAACACAAATTCTATCCGGGTT
CTGTTCTCTTAAATAATTCCGGTTTTTAAAGAGCCAAAAAAACTTTCCCA
ATGAGAAAACGTTATAGTAGCCTTGAAAACCTTTCAAAGAAATCTCTATC
AATTTTCTCTTTAGTATGGGAAAAGGTGAAAACTGCAGCCAACAGATTGG
TCGATTCAGTAAAAGCAACAAAACAAAAAATCATCGAACAATACAAACCT
CAAATCCTTGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034299XLOC_034299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054423-exon-scaffold_242-1575043694:1607037..1607302TCONS_00054423-exon-scaffold_242-1575043694:1607037..1607302Clytia hemisphaericaexon
TCONS_00054423-exon-scaffold_242-1575043694:1606635..1606910TCONS_00054423-exon-scaffold_242-1575043694:1606635..1606910Clytia hemisphaericaexon
TCONS_00054423-exon-scaffold_242-1575043694:1605389..1605488TCONS_00054423-exon-scaffold_242-1575043694:1605389..1605488Clytia hemisphaericaexon
TCONS_00054423-exon-scaffold_242-1510915933:1607037..1607302TCONS_00054423-exon-scaffold_242-1510915933:1607037..1607302Clytia hemisphaericaexon
TCONS_00054423-exon-scaffold_242-1510915933:1606635..1606910TCONS_00054423-exon-scaffold_242-1510915933:1606635..1606910Clytia hemisphaericaexon
TCONS_00054423-exon-scaffold_242-1510915933:1605389..1605488TCONS_00054423-exon-scaffold_242-1510915933:1605389..1605488Clytia hemisphaericaexon
TCONS_00054423-exon-scaffold_242-1491911889:1607037..1607302TCONS_00054423-exon-scaffold_242-1491911889:1607037..1607302Clytia hemisphaericaexon
TCONS_00054423-exon-scaffold_242-1491911889:1606635..1606910TCONS_00054423-exon-scaffold_242-1491911889:1606635..1606910Clytia hemisphaericaexon
TCONS_00054423-exon-scaffold_242-1491911889:1605389..1605488TCONS_00054423-exon-scaffold_242-1491911889:1605389..1605488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1605389..1607302 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.557042	0.383107	0	0	0	0	0	0.0740583	0	0.0490902	0.0311671	0.29883	0.0798593	0.125841	0	0.215427	1.11722	1.69044	2.41433	3.69268	12.2367	9.57737	59.0659	91.6746	122.493	133.892	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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