|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054424 ID=TCONS_00054424|Name=TCONS_00054424|organism=Clytia hemisphaerica|type=transcript|length=542bp
AAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGA
TGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTG
TCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAATC
AATTTTGTTACCGATGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGC
TGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAAC
CAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAG
GGAAAGAGAATCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGT
TGAAGATCTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAG
AAGATTCTGAATTGATGGATGCTGAATTCTTTTTCTCTGAATTATGGGAA
AAGGTGAAAACTGCAGCCAACAGATTGGTCGATTCAGtaaaagcaacaaa
acaaaaaatcatcgAACAATACAAACCTCAAATCCTTGCTGC Run BLAST on NCBI transcript from alignment at scaffold_242:1605389..1608069- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054424 ID=TCONS_00054424|Name=TCONS_00054424|organism=Clytia hemisphaerica|type=transcript|length=2681bp|location=Sequence derived from alignment at scaffold_242:1605389..1608069- (Clytia hemisphaerica)
AAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGA
TGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTG
TCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAATC
AATTTTGTTACCGATGGTAAGTTATTTTGACGATTCAAACTTGTTTTCCT
GTTAGTCTCTGTAATAAAGAAAATAATCAAAATAGATAAATTGCAAATAC
CTTTTTCAAAATCATAATACTAATTTCATCTTCAAATTTCAGCATGGAAG
AAAGTCACTGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAAC
CAGAGCTTTGATCGAGAAATATAAACCAAAAGTAACAGATGCTTTGACCA
GAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAATC
ATTGGTGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGAT
TGTTAGAGAGCTTGCTGCTCTTTCAGAAGATTCTGAATTGATGGATGCTG
AATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACACAAA
TCCTGCTCTCTTGATCTAAAGTTATTAGAATTACTCCGATTTTAAAGAGC
CAAAAAAACATTCCCAATGAGAAAAAATTATAGTAGTCTTGAAAACCTTT
CAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAATCT
GCAGCTAACAGATTGATCGACTCAGTAAAAGCAACAACACAAAAAATCAT
CGAACAGTACAAACCTCAAATCCTTGCTGCTTTGGAAAATGTCCAAAAAG
TTGTCATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATT
GTCAAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCA
CCCAGAGTTTGCTGTTGTCTCATTTTCAATCTATGAAGAAATTGATAGCT
CTTCCATTCCAAGAATCAATTTTGTTACCGATGGTAAGTTATTTTGACGA
TTCGAACTTGTTTTCCTGTTAGTCTCTGTAATAAAGAAAATAATCAAAAT
AGATCAATTGCAAATACCTTTTTCAAAATCATAATATTAATTTCATCTTC
AAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGAC
AAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAAAAGT
AACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAGA
GAATCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGAAGAT
CTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAGAAGATTC
TGAATTGATGGATGCTGAATTCTTTTTCTCTGAATGTAAGATAATATTTT
ATTCACAAAAACACAAATCCTATCCGGGGTCTAATATTTCTCAAATAATT
CCGGTTTTTAAAGAGCCAAAAAAACTTTCCCAATGAGAAAACGTTATAGT
AGTCTTTAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATG
GGAAAAGGTGAAAGCTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGCTA
CAACACAAAAAATCATCGAACAATACAAACCTCAAATCCTTGCTGCTTTG
GAAAATGTCCAAAAAGTTGTCATCAAAGGAGTCAAAGATTTGATCATCGA
AGTTGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACAT
CAGATGGCAAAGACCATCCAGAGTTTGCTATTGTCTCATTTTCAATCTTT
GAAGAGATTGATGGCTCTTCCATTCCAAGAATCAACTTTGTTACTGATGG
TAAGTTATTTTGACGATTCAAACTTGTTTTCCTGTTTGTCTGTGTAATAA
AGAAAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCATAT
AATATTAATTCCATCTTCAAATTTCAGCATGGAAAAAAGTCACTGATGCT
TTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGA
GAAATATAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGA
TCATTGACGAGGGAAAGAGAATCGTTATTGAAATCATTGGTGATATTGTC
AAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAGAGAGCTTGC
TGCTCTTTCAGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTCTG
AATGTAAGANGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATG
AGATTGTTAAAGAACTTGCTGCTCTTTCCGAAGATTCTGAATTGATGGAT
GCTGAATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACA
CAAATTCTATCCGGGTTCTGTTCTCTTAAATAATTCCGGTTTTTAAAGAG
CCAAAAAAACTTTCCCAATGAGAAAACGTTATAGTAGCCTTGAAAACCTT
TCAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAAAC
TGCAGCCAACAGATTGGTCGATTCAGTAAAAGCAACAAAACAAAAAATCA
TCGAACAATACAAACCTCAAATCCTTGCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054424-exon-scaffold_242-1575043694:1607904..1608069 | TCONS_00054424-exon-scaffold_242-1575043694:1607904..1608069 | Clytia hemisphaerica | exon |
| TCONS_00054424-exon-scaffold_242-1575043694:1606635..1606910 | TCONS_00054424-exon-scaffold_242-1575043694:1606635..1606910 | Clytia hemisphaerica | exon |
| TCONS_00054424-exon-scaffold_242-1575043694:1605389..1605488 | TCONS_00054424-exon-scaffold_242-1575043694:1605389..1605488 | Clytia hemisphaerica | exon |
| TCONS_00054424-exon-scaffold_242-1510915933:1607904..1608069 | TCONS_00054424-exon-scaffold_242-1510915933:1607904..1608069 | Clytia hemisphaerica | exon |
| TCONS_00054424-exon-scaffold_242-1510915933:1606635..1606910 | TCONS_00054424-exon-scaffold_242-1510915933:1606635..1606910 | Clytia hemisphaerica | exon |
| TCONS_00054424-exon-scaffold_242-1510915933:1605389..1605488 | TCONS_00054424-exon-scaffold_242-1510915933:1605389..1605488 | Clytia hemisphaerica | exon |
| TCONS_00054424-exon-scaffold_242-1491911889:1607904..1608069 | TCONS_00054424-exon-scaffold_242-1491911889:1607904..1608069 | Clytia hemisphaerica | exon |
| TCONS_00054424-exon-scaffold_242-1491911889:1606635..1606910 | TCONS_00054424-exon-scaffold_242-1491911889:1606635..1606910 | Clytia hemisphaerica | exon |
| TCONS_00054424-exon-scaffold_242-1491911889:1605389..1605488 | TCONS_00054424-exon-scaffold_242-1491911889:1605389..1605488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1605389..1608069 - |
Blast
The following BLAST results are available for this feature:
|
