TCONS_00054429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054429
Unique NameTCONS_00054429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054429 ID=TCONS_00054429|Name=TCONS_00054429|organism=Clytia hemisphaerica|type=transcript|length=1669bp
ttcaattgttttccGATTAGTTCAAGTTGATTTTAGATTTAAAGCGAAAA
AGCGAAGAAGAAAGTTTCTTCGGaagaattttgaatttgttcaACGGGAA
CGGTCGAATTTAGCTGGTTTTGGAAGAGTCGCCTAGTATCGTTTAAGgga
gatttcaaaatgagtttCCGTGTAGGTATTGGTGTCTTACTCATGGTATC
AATGACTTTCGCACTCACGGTCAAAGGTCCAAAGTCGCTACACGATAAAA
TCTGCATTGTCGGCGCCGGACCGTCAGGAATTCACATGGCGCTAAGTTTG
AAGGAGCGCGGTTTCACCAATATTGTCATTTTGGAGAAGAATTCTTTCGT
GGGTGGTAAATCATGGACTATCAACCACCGGGGCGTCGCCCATGAAATGG
GATCAGTTTATCTGGCACCTGATTACGAAGACAATGTTATCCCTTTGGTT
AATAAATACATGCCGAATGATTTAgtgattttacccccgtctgCTGTTTG
GATGGATGATTTGCCGGGACCGATTCCTTACGAGCAATATTTGATTGGTT
ATGCGATGAAGTTTTTCGGTACGAACGACATCAGAGTGGCAGGTGGAAAG
TTGGGGCAGACAATCGTGCAGTATATCGCCAAACATAATGAAATATTTGG
TGCTTATGAAGGTGACTTGATGCCTGAACCAACACCAGATAATAAAGTGA
AAATCCAAGGAACTTTTGTTGACTTTCTATCAAGAAACAATATGTTGGCC
ATGCAATGCATTCTGTACGCTTCCAGTTCCGTGCAAGGTTACGGTCGCCT
CGATGAAATTCCAGCATTGTATGGACTGATGTGGAATACACCGAAATTGA
TGGCATCCCTTCTCCAAAGGCTCTCAGGGAACACGAATGGCACAGGTTTG
TACATGTTGAGACATGGTTTCAAAACACTCTGGGAAAGAATCATTCAAGC
TGAAAATCTGGACGTGCGTTTCAGCAGTGAAATTTACCGACTGTATCGGA
GTAAAACCGAACCAAAAGTGTGGCTTGAAGTTGAGAGCAGTGGAACGAGA
AAATTCAATTCGTACGATTTCTTGATTTGGAGTCCAGAGATGAAAACGAG
TCTTCCATTATGGGATGCGAACGTTGAGGAAAGATTTTACTTTTCACGCT
CAAAACCTGCCTTCTTTACAACCGCCCTAGTTGACACGGATGGGGAATTA
AGGGCGCCATCGCCGATTGATTACTGGTTTGATAACATCAATAAGAAACG
CCAACACTCCCTTTGGGCGTTAAGAGATTCCTATGGCGCCCTTCATGGAT
ATTCAGGGGCAATGTATCAGTCGAAATTATACCCGAGCGGTAACGATGGC
AAGCAGACTAGATCACAAGTCACTTATCAAATGGGTGACGAAGCACCTGT
CTATACTGAGCTGAGACATACCTTGCTAAACGCTATGAAAACAGACCTTC
AAGCTAGTTCAGTTAATGTTCTGTATATGAAGACATGGCGATATTTTCCT
CGATTTTCGCATCAAGATCTCGCTGATGGCATGTTGTGGAGGATCTTGGA
GATGCAAGGCAATCACGGGATGTGGTATATCGGATCATCAGTGTCCTTCG
AAAGCGTCAAATCTGTTGTAGAGTATAATAAGCTACTCTTAAAACATTTC
ACTGTACCAACTAGCTGAG
Run BLAST on NCBI

protein sequence of TCONS_00054429-protein

>TCONS_00054429-protein ID=TCONS_00054429-protein|Name=TCONS_00054429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
MSFRVGIGVLLMVSMTFALTVKGPKSLHDKICIVGAGPSGIHMALSLKER
GFTNIVILEKNSFVGGKSWTINHRGVAHEMGSVYLAPDYEDNVIPLVNKY
MPNDLVILPPSAVWMDDLPGPIPYEQYLIGYAMKFFGTNDIRVAGGKLGQ
TIVQYIAKHNEIFGAYEGDLMPEPTPDNKVKIQGTFVDFLSRNNMLAMQC
ILYASSSVQGYGRLDEIPALYGLMWNTPKLMASLLQRLSGNTNGTGLYML
RHGFKTLWERIIQAENLDVRFSSEIYRLYRSKTEPKVWLEVESSGTRKFN
SYDFLIWSPEMKTSLPLWDANVEERFYFSRSKPAFFTTALVDTDGELRAP
SPIDYWFDNINKKRQHSLWALRDSYGALHGYSGAMYQSKLYPSGNDGKQT
RSQVTYQMGDEAPVYTELRHTLLNAMKTDLQASSVNVLYMKTWRYFPRFS
HQDLADGMLWRILEMQGNHGMWYIGSSVSFESVKSVVEYNKLLLKHFTVP
TS
Run BLAST on NCBI

transcript from alignment at scaffold_242:1703963..1706976-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054429 ID=TCONS_00054429|Name=TCONS_00054429|organism=Clytia hemisphaerica|type=transcript|length=3014bp|location=Sequence derived from alignment at scaffold_242:1703963..1706976- (Clytia hemisphaerica)
TTCAATTGTTTTCCGATTAGTTCAAGTTGATTTTAGATTTAAAGCGAAAA
AGCGAAGAAGAAAGTTTCTTCGGAAGAATTTTGAATTTGTTCAACGGGAA
CGGTCGAATTTAGCTGGTTTTGGAAGAGTCGCCTAGTATCGTTTAAGGTA
ATCACTTACATTTCTTTAAACAAGGCTGCAAAAAAGGTTAAAATCTTTTC
TTTGACACTATCAGCATTATCCGAAATGAACAAGGACAAATAATAATACC
CCAACTCTACTACAATATAAGACTATGTTTAATTGTACCAAATCAACCAA
CTTAAATTTCTATTTGTCGTCTTTATAGGGAGATTTCAAAATGAGTTTCC
GTGTAGGTATTGGTGTCTTACTCATGGTATCAATGACTTTCGCACTCACG
GTCAAAGGTCCAAAGTCGCTACACGATAAAATCTGCATTGTCGGCGCCGG
ACCGTCAGGAATTCACATGGCGCTAAGTTTGAAGGAGCGCGGTTTCACCA
ATATTGTCATTTTGGAGAAGAATTCTTTCGTGGGTGGTAAATCATGGACT
ATCAACCACCGGGGCGTCGCCCATGAAATGGGATCAGTTTATCTGGCACC
TGATTACGAAGACAATGTTATCCCTTTGGTTAATAAATACATGCCGAATG
ATTTAGTGATTTTACCCCCGTCTGCTGTTTGGATGGATGATTTGCCGGGA
CCGATTCCTTACGAGCAATATTTGATTGGTAAGTTTGTTTGTTAAGTTTC
CCAGTTTAGCGAAATTTTTGCAAACAAATTAAAGCATCTTACATAAGGTG
TTCTACTTGCGATATCCGACTAAACCATTGACTTTTTACCTTAAAATGGA
AGGTGCCGAAAATATTATTTATAGAAAGGCTCAGATAGGCTTTTTAACAA
AAATATCTGAGATATAATGAGAACTGAATTTAGAAATGCGTCATTTTTTC
AATAATAGGTTATGCGATGAAGTTTTTCGGTACGAACGACATCAGAGTGG
CAGGTGGAAAGTTGGGGCAGACAATCGTGCAGTATATCGCCAAACATAAT
GAAATATTTGGTGCTTATGAAGGTGACTTGATGCCTGAACCAACACCAGA
TGTACGTTTGTTTACACAGTTGATTCTCCGTAACTTGAACTAGCACGGGG
AACAAAAAGTTGTTCGAGTAAAGGGCTTTCGAGTTATGGAGTAAGGTTTA
TAAAGCATTGTTGACTGAAGGGACGAAAGTGAAAGTCTTTGTTAAGTTCC
GTAGCGTCTTATTTGAAAGAGTGTCCATTTTTCTGACAAACCAAAAATTA
AGGGGAGAAAAGGTGACAATAATCATGCTAAAATTAATCTATTTTCCTTC
CATAAAATTCAGAATAAAGTGAAAATCCAAGGAACTTTTGTTGACTTTCT
ATCAAGAAACAATATGTTGGCCATGCAATGCATTCTGTACGCTTCCAGTT
CCGTGCAAGGTTACGGTCGCCTCGATGAAATTCCAGCATTGTATGGACTG
ATGTGGAATACACCGAAATTGATGGCATCCCTTCTCCAAAGGCTCTCAGG
GAACACGAATGGCACAGGTAAGTTGGATGATTATCTGATATTCCGATGGC
GGATTGGCGGCCGCTCATGCTAAAGCTCTAAAAGAGCGGGTCAATTTCGC
ATCGTAGAGGAATGATAGTGGGCCTTTGATGTGCCGCATCCCCAGTCGAG
TTCAACTACCTCTGCGCGTAAGTTATCATTTGGACCCACCAGTCCCCGAA
AACAAGGGCTGGGTTCTCAGACCTCCCGTTGCAAAATCATTGACTCGGTC
TTGCAAAATTTCGTAATCTAAACCTTCCAGATGTTGAAAATTTTTCCGAC
CTTTAGAGCTTTAGCGTGTCGGATGAAAATTTCTGCATCTGGATGCCAGG
TAAGTTGGACGAGTGAATGTAGAAAGAGAGAGAGAGAGAACGAATAATTT
CATAAGTGAGTGAACGGACGAAATTGCGAGTTATGAAAGATGAAAAGAAC
AAGCACGATGAACAATAAAATCATTGAAATGGGCACGCAAGTATGCGGTT
CTAGACTTTATGTTAGTTAGTACAGTGGACTCCACGTAACGCGAAAACGT
ACGACACGGGAAAGTAAAATTTGTTCAAATTAAGGGAGTTTTGAGTTACG
GGGATTAAATTAAGGATTATAGAGCATCGATTCGAGTTAAGGAGACGTTC
ATATAGAGATTCAAGTTAATGAAACTTCACTGTATTTCAGGTTTGTACAT
GTTGAGACATGGTTTCAAAACACTCTGGGAAAGAATCATTCAAGCTGAAA
ATCTGGACGTGCGTTTCAGCAGTGAAATTTACCGACTGTATCGGAGTAAA
ACCGAACCAAAAGTGTGGCTTGAAGTTGAGAGCAGTGGAACGAGAAAATT
CAATTCGTACGATTTCTTGATTTGGAGTCCAGAGATGAAAACGAGTCTTC
CATTATGGGATGCGAACGTTGAGGAAAGATTTTACTTTTCACGCTCAAAA
CCTGCCTTCTTTACAACCGCCCTAGTTGACACGGATGGGGAATTAAGGGC
GCCATCGCCGATTGATTACTGGTTTGATAACATCAATAAGAAACGCCAAC
ACTCCCTTTGGGCGTTAAGAGATTCCTATGGCGCCCTTCATGGATATTCA
GGGGCAATGTATCAGTCGAAATTATACCCGAGCGGTAACGATGGCAAGCA
GACTAGATCACAAGTCACTTATCAAATGGGTGACGAAGCACCTGTCTATA
CTGAGCTGAGACATACCTTGCTAAACGCTATGAAAACAGACCTTCAAGCT
AGTTCAGTTAATGTTCTGTATATGAAGACATGGCGATATTTTCCTCGATT
TTCGCATCAAGATCTCGCTGATGGCATGTTGTGGAGGATCTTGGAGATGC
AAGGCAATCACGGGATGTGGTATATCGGATCATCAGTGTCCTTCGAAAGC
GTCAAATCTGTTGTAGAGTATAATAAGCTACTCTTAAAACATTTCACTGT
ACCAACTAGCTGAG

Coding sequence (CDS) from alignment at scaffold_242:1703963..1706976-

>TCONS_00054429 ID=TCONS_00054429|Name=TCONS_00054429|organism=Clytia hemisphaerica|type=CDS|length=6036bp|location=Sequence derived from alignment at scaffold_242:1703963..1706976- (Clytia hemisphaerica)
GTTTGTACATGTTGAGACATGGTTTCAAAACACTCTGGGAAAGAATCATT
CAAGCTGAAAATCTGGACGTGCGTTTCAGCAGTGAAATTTACCGACTGTA
TCGGAGTAAAACCGAACCAAAAGTGTGGCTTGAAGTTGAGAGCAGTGGAA
CGAGAAAATTCAATTCGTACGATTTCTTGATTTGGAGTCCAGAGATGAAA
ACGAGTCTTCCATTATGGGATGCGAACGTTGAGGAAAGATTTTACTTTTC
ACGCTCAAAACCTGCCTTCTTTACAACCGCCCTAGTTGACACGGATGGGG
AATTAAGGGCGCCATCGCCGATTGATTACTGGTTTGATAACATCAATAAG
AAACGCCAACACTCCCTTTGGGCGTTAAGAGATTCCTATGGCGCCCTTCA
TGGATATTCAGGGGCAATGTATCAGTCGAAATTATACCCGAGCGGTAACG
ATGGCAAGCAGACTAGATCACAAGTCACTTATCAAATGGGTGACGAAGCA
CCTGTCTATACTGAGCTGAGACATACCTTGCTAAACGCTATGAAAACAGA
CCTTCAAGCTAGTTCAGTTAATGTTCTGTATATGAAGACATGGCGATATT
TTCCTCGATTTTCGCATCAAGATCTCGCTGATGGCATGTTGTGGAGGATC
TTGGAGATGCAAGGCAATCACGGGATGTGGTATATCGGATCATCAGTGTC
CTTCGAAAGCGTCAAATCTGTTGTAGAGTATAATAAGCTACTCTTAAAAC
ATTTCACTGTACCAACTAGCTGAAATAAAGTGAAAATCCAAGGAACTTTT
GTTGACTTTCTATCAAGAAACAATATGTTGGCCATGCAATGCATTCTGTA
CGCTTCCAGTTCCGTGCAAGGTTACGGTCGCCTCGATGAAATTCCAGCAT
TGTATGGACTGATGTGGAATACACCGAAATTGATGGCATCCCTTCTCCAA
AGGCTCTCAGGGAACACGAATGGCACAGGTTATGCGATGAAGTTTTTCGG
TACGAACGACATCAGAGTGGCAGGTGGAAAGTTGGGGCAGACAATCGTGC
AGTATATCGCCAAACATAATGAAATATTTGGTGCTTATGAAGGTGACTTG
ATGCCTGAACCAACACCAGATATGAGTTTCCGTGTAGGTATTGGTGTCTT
ACTCATGGTATCAATGACTTTCGCACTCACGGTCAAAGGTCCAAAGTCGC
TACACGATAAAATCTGCATTGTCGGCGCCGGACCGTCAGGAATTCACATG
GCGCTAAGTTTGAAGGAGCGCGGTTTCACCAATATTGTCATTTTGGAGAA
GAATTCTTTCGTGGGTGGTAAATCATGGACTATCAACCACCGGGGCGTCG
CCCATGAAATGGGATCAGTTTATCTGGCACCTGATTACGAAGACAATGTT
ATCCCTTTGGTTAATAAATACATGCCGAATGATTTAGTGATTTTACCCCC
GTCTGCTGTTTGGATGGATGATTTGCCGGGACCGATTCCTTACGAGCAAT
ATTTGATTGGTTTGTACATGTTGAGACATGGTTTCAAAACACTCTGGGAA
AGAATCATTCAAGCTGAAAATCTGGACGTGCGTTTCAGCAGTGAAATTTA
CCGACTGTATCGGAGTAAAACCGAACCAAAAGTGTGGCTTGAAGTTGAGA
GCAGTGGAACGAGAAAATTCAATTCGTACGATTTCTTGATTTGGAGTCCA
GAGATGAAAACGAGTCTTCCATTATGGGATGCGAACGTTGAGGAAAGATT
TTACTTTTCACGCTCAAAACCTGCCTTCTTTACAACCGCCCTAGTTGACA
CGGATGGGGAATTAAGGGCGCCATCGCCGATTGATTACTGGTTTGATAAC
ATCAATAAGAAACGCCAACACTCCCTTTGGGCGTTAAGAGATTCCTATGG
CGCCCTTCATGGATATTCAGGGGCAATGTATCAGTCGAAATTATACCCGA
GCGGTAACGATGGCAAGCAGACTAGATCACAAGTCACTTATCAAATGGGT
GACGAAGCACCTGTCTATACTGAGCTGAGACATACCTTGCTAAACGCTAT
GAAAACAGACCTTCAAGCTAGTTCAGTTAATGTTCTGTATATGAAGACAT
GGCGATATTTTCCTCGATTTTCGCATCAAGATCTCGCTGATGGCATGTTG
TGGAGGATCTTGGAGATGCAAGGCAATCACGGGATGTGGTATATCGGATC
ATCAGTGTCCTTCGAAAGCGTCAAATCTGTTGTAGAGTATAATAAGCTAC
TCTTAAAACATTTCACTGTACCAACTAGCTGAAATAAAGTGAAAATCCAA
GGAACTTTTGTTGACTTTCTATCAAGAAACAATATGTTGGCCATGCAATG
CATTCTGTACGCTTCCAGTTCCGTGCAAGGTTACGGTCGCCTCGATGAAA
TTCCAGCATTGTATGGACTGATGTGGAATACACCGAAATTGATGGCATCC
CTTCTCCAAAGGCTCTCAGGGAACACGAATGGCACAGGTTATGCGATGAA
GTTTTTCGGTACGAACGACATCAGAGTGGCAGGTGGAAAGTTGGGGCAGA
CAATCGTGCAGTATATCGCCAAACATAATGAAATATTTGGTGCTTATGAA
GGTGACTTGATGCCTGAACCAACACCAGATATGAGTTTCCGTGTAGGTAT
TGGTGTCTTACTCATGGTATCAATGACTTTCGCACTCACGGTCAAAGGTC
CAAAGTCGCTACACGATAAAATCTGCATTGTCGGCGCCGGACCGTCAGGA
ATTCACATGGCGCTAAGTTTGAAGGAGCGCGGTTTCACCAATATTGTCAT
TTTGGAGAAGAATTCTTTCGTGGGTGGTAAATCATGGACTATCAACCACC
GGGGCGTCGCCCATGAAATGGGATCAGTTTATCTGGCACCTGATTACGAA
GACAATGTTATCCCTTTGGTTAATAAATACATGCCGAATGATTTAGTGAT
TTTACCCCCGTCTGCTGTTTGGATGGATGATTTGCCGGGACCGATTCCTT
ACGAGCAATATTTGATTGGTTTGTACATGTTGAGACATGGTTTCAAAACA
CTCTGGGAAAGAATCATTCAAGCTGAAAATCTGGACGTGCGTTTCAGCAG
TGAAATTTACCGACTGTATCGGAGTAAAACCGAACCAAAAGTGTGGCTTG
AAGTTGAGAGCAGTGGAACGAGAAAATTCAATTCGTACGATTTCTTGATT
TGGAGTCCAGAGATGAAAACGAGTCTTCCATTATGGGATGCGAACGTTGA
GGAAAGATTTTACTTTTCACGCTCAAAACCTGCCTTCTTTACAACCGCCC
TAGTTGACACGGATGGGGAATTAAGGGCGCCATCGCCGATTGATTACTGG
TTTGATAACATCAATAAGAAACGCCAACACTCCCTTTGGGCGTTAAGAGA
TTCCTATGGCGCCCTTCATGGATATTCAGGGGCAATGTATCAGTCGAAAT
TATACCCGAGCGGTAACGATGGCAAGCAGACTAGATCACAAGTCACTTAT
CAAATGGGTGACGAAGCACCTGTCTATACTGAGCTGAGACATACCTTGCT
AAACGCTATGAAAACAGACCTTCAAGCTAGTTCAGTTAATGTTCTGTATA
TGAAGACATGGCGATATTTTCCTCGATTTTCGCATCAAGATCTCGCTGAT
GGCATGTTGTGGAGGATCTTGGAGATGCAAGGCAATCACGGGATGTGGTA
TATCGGATCATCAGTGTCCTTCGAAAGCGTCAAATCTGTTGTAGAGTATA
ATAAGCTACTCTTAAAACATTTCACTGTACCAACTAGCTGAAATAAAGTG
AAAATCCAAGGAACTTTTGTTGACTTTCTATCAAGAAACAATATGTTGGC
CATGCAATGCATTCTGTACGCTTCCAGTTCCGTGCAAGGTTACGGTCGCC
TCGATGAAATTCCAGCATTGTATGGACTGATGTGGAATACACCGAAATTG
ATGGCATCCCTTCTCCAAAGGCTCTCAGGGAACACGAATGGCACAGGTTA
TGCGATGAAGTTTTTCGGTACGAACGACATCAGAGTGGCAGGTGGAAAGT
TGGGGCAGACAATCGTGCAGTATATCGCCAAACATAATGAAATATTTGGT
GCTTATGAAGGTGACTTGATGCCTGAACCAACACCAGATATGAGTTTCCG
TGTAGGTATTGGTGTCTTACTCATGGTATCAATGACTTTCGCACTCACGG
TCAAAGGTCCAAAGTCGCTACACGATAAAATCTGCATTGTCGGCGCCGGA
CCGTCAGGAATTCACATGGCGCTAAGTTTGAAGGAGCGCGGTTTCACCAA
TATTGTCATTTTGGAGAAGAATTCTTTCGTGGGTGGTAAATCATGGACTA
TCAACCACCGGGGCGTCGCCCATGAAATGGGATCAGTTTATCTGGCACCT
GATTACGAAGACAATGTTATCCCTTTGGTTAATAAATACATGCCGAATGA
TTTAGTGATTTTACCCCCGTCTGCTGTTTGGATGGATGATTTGCCGGGAC
CGATTCCTTACGAGCAATATTTGATTGGTTTGTACATGTTGAGACATGGT
TTCAAAACACTCTGGGAAAGAATCATTCAAGCTGAAAATCTGGACGTGCG
TTTCAGCAGTGAAATTTACCGACTGTATCGGAGTAAAACCGAACCAAAAG
TGTGGCTTGAAGTTGAGAGCAGTGGAACGAGAAAATTCAATTCGTACGAT
TTCTTGATTTGGAGTCCAGAGATGAAAACGAGTCTTCCATTATGGGATGC
GAACGTTGAGGAAAGATTTTACTTTTCACGCTCAAAACCTGCCTTCTTTA
CAACCGCCCTAGTTGACACGGATGGGGAATTAAGGGCGCCATCGCCGATT
GATTACTGGTTTGATAACATCAATAAGAAACGCCAACACTCCCTTTGGGC
GTTAAGAGATTCCTATGGCGCCCTTCATGGATATTCAGGGGCAATGTATC
AGTCGAAATTATACCCGAGCGGTAACGATGGCAAGCAGACTAGATCACAA
GTCACTTATCAAATGGGTGACGAAGCACCTGTCTATACTGAGCTGAGACA
TACCTTGCTAAACGCTATGAAAACAGACCTTCAAGCTAGTTCAGTTAATG
TTCTGTATATGAAGACATGGCGATATTTTCCTCGATTTTCGCATCAAGAT
CTCGCTGATGGCATGTTGTGGAGGATCTTGGAGATGCAAGGCAATCACGG
GATGTGGTATATCGGATCATCAGTGTCCTTCGAAAGCGTCAAATCTGTTG
TAGAGTATAATAAGCTACTCTTAAAACATTTCACTGTACCAACTAGCTGA
AATAAAGTGAAAATCCAAGGAACTTTTGTTGACTTTCTATCAAGAAACAA
TATGTTGGCCATGCAATGCATTCTGTACGCTTCCAGTTCCGTGCAAGGTT
ACGGTCGCCTCGATGAAATTCCAGCATTGTATGGACTGATGTGGAATACA
CCGAAATTGATGGCATCCCTTCTCCAAAGGCTCTCAGGGAACACGAATGG
CACAGGTTATGCGATGAAGTTTTTCGGTACGAACGACATCAGAGTGGCAG
GTGGAAAGTTGGGGCAGACAATCGTGCAGTATATCGCCAAACATAATGAA
ATATTTGGTGCTTATGAAGGTGACTTGATGCCTGAACCAACACCAGATAT
GAGTTTCCGTGTAGGTATTGGTGTCTTACTCATGGTATCAATGACTTTCG
CACTCACGGTCAAAGGTCCAAAGTCGCTACACGATAAAATCTGCATTGTC
GGCGCCGGACCGTCAGGAATTCACATGGCGCTAAGTTTGAAGGAGCGCGG
TTTCACCAATATTGTCATTTTGGAGAAGAATTCTTTCGTGGGTGGTAAAT
CATGGACTATCAACCACCGGGGCGTCGCCCATGAAATGGGATCAGTTTAT
CTGGCACCTGATTACGAAGACAATGTTATCCCTTTGGTTAATAAATACAT
GCCGAATGATTTAGTGATTTTACCCCCGTCTGCTGTTTGGATGGATGATT
TGCCGGGACCGATTCCTTACGAGCAATATTTGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034301XLOC_034301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054429-exon-scaffold_242-1575043694:1706830..1706976TCONS_00054429-exon-scaffold_242-1575043694:1706830..1706976Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1575043694:1706249..1706648TCONS_00054429-exon-scaffold_242-1575043694:1706249..1706648Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1575043694:1705876..1706018TCONS_00054429-exon-scaffold_242-1575043694:1705876..1706018Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1575043694:1705410..1705614TCONS_00054429-exon-scaffold_242-1575043694:1705410..1705614Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1575043694:1703963..1704736TCONS_00054429-exon-scaffold_242-1575043694:1703963..1704736Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1510915933:1706830..1706976TCONS_00054429-exon-scaffold_242-1510915933:1706830..1706976Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1510915933:1706249..1706648TCONS_00054429-exon-scaffold_242-1510915933:1706249..1706648Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1510915933:1705876..1706018TCONS_00054429-exon-scaffold_242-1510915933:1705876..1706018Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1510915933:1705410..1705614TCONS_00054429-exon-scaffold_242-1510915933:1705410..1705614Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1510915933:1703963..1704736TCONS_00054429-exon-scaffold_242-1510915933:1703963..1704736Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1491911889:1706830..1706976TCONS_00054429-exon-scaffold_242-1491911889:1706830..1706976Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1491911889:1706249..1706648TCONS_00054429-exon-scaffold_242-1491911889:1706249..1706648Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1491911889:1705876..1706018TCONS_00054429-exon-scaffold_242-1491911889:1705876..1706018Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1491911889:1705410..1705614TCONS_00054429-exon-scaffold_242-1491911889:1705410..1705614Clytia hemisphaericaexon
TCONS_00054429-exon-scaffold_242-1491911889:1703963..1704736TCONS_00054429-exon-scaffold_242-1491911889:1703963..1704736Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054429-proteinTCONS_00054429-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1703963..1706976 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0143279	0.38007	4.66066e-08	0.0396284	0.0933426	1.13122	0.725751	1.94198	1.26407	0.50383	2.70453	10.9933	10.4736	0.152102	0	3.05995	5.23044	47.1895	50.7552	19.6004	24.1071	4.27709	6.01625	13.4022	12.6369	0.353346	0	2.14173e-08	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
IPR002937Amino_oxidase
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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