TCONS_00054438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054438
Unique NameTCONS_00054438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1195

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054438 ID=TCONS_00054438|Name=TCONS_00054438|organism=Clytia hemisphaerica|type=transcript|length=1195bp
ACGGTTGTTGACAACCTGCTTGATCTTAAAGATTTCCTTTCAATTGAAGA
CTAAACTTTTTTGATAGTGAttataattaaaataaaaagaaaagacaatA
TTGTTATGGGGAAGCCAGTCAAAAAGAATCAAACTGAAACACAGCCAGAT
GGTGCATTGAAATCTCAAAAGAGCAGCGCTGGTAAACGATTCAGGAACTT
CAAAAAAGGCGGAGGACTCCAACAATCTATAGGAAATGCTAGTAAAGGAC
ATGGTCTAACTCACAAAGCAAGAATTTTGAGTCGTTTCAAGAAGCGTTTT
CTCTCAAAAAGGAAGcagaaaaaagaaacattacATATCAAGCCTTTGGC
TGAAGATATCAAAAGAGAACCAATACACTCACAAGCGGATCTAACTGAAA
GTAACACGACTGGCCTATCGTCCCTTGCAATCGATGAATCTCCTACTCAT
AAAGGAAGGCTCacagaaattaaaaaagaagaagtttttGTTCTCAAACC
AAGCCCAATAAAAACAGAAAGCCCAAAAACATTATTCCAAAGAAAACAAC
AGGGCCCTAGATTGACTAGTTCCAAATTAGCTTCTTCCAAGAACTCTAAA
TTTGATAATTCTGTTGTGAAAAGGACTCACTCTGTGAATAATAAACGTGC
GACAGACTCTATTGATGGGAACGATAATAAAAACAACACAGTCCAACCGA
AAAAGCACTTCAAGAAGAACCCCCTTGGAAGGAGTAATGATGACCTTTTG
AAGATAGATTATCATGCCATAGAAGAGGAAAGACAGAAAGAAGTTTTGaa
aatccaaaGTAAGAAGTTATCAGAAGAATACCACAAAAAGTTGAACAGCA
ATATCCAACAACGAAAATCTGTCAGTAAGAATTTGAAACAACGAAGCAAG
AGGGGTCAACCTATCATGTCTAATCAAATTGAACACATCctggaaaaagt
gaaaaagaacaATGGATTATGATATGTAAAAATCAGGGTTTGTTAAACTG
TCCTGTCTAAACCTAGCGTTACGTTTAATACTTTTAAAGACTACAGAGTT
TGTTAAGAATTGTCCTCTCTAATGTTGTAATGTATCAAACTTTAAAGCCT
GCCGTCCACTAGGCTATTTTTAGCTATCGCGAAATAATCATCTATAAATA
ACACTGTCTATCGCGAAATAAACCTGTCCATCGCGTCATTTTATT
Run BLAST on NCBI

protein sequence of TCONS_00054438-protein

>TCONS_00054438-protein ID=TCONS_00054438-protein|Name=TCONS_00054438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MGKPVKKNQTETQPDGALKSQKSSAGKRFRNFKKGGGLQQSIGNASKGHG
LTHKARILSRFKKRFLSKRKQKKETLHIKPLAEDIKREPIHSQADLTESN
TTGLSSLAIDESPTHKGRLTEIKKEEVFVLKPSPIKTESPKTLFQRKQQG
PRLTSSKLASSKNSKFDNSVVKRTHSVNNKRATDSIDGNDNKNNTVQPKK
HFKKNPLGRSNDDLLKIDYHAIEEERQKEVLKIQSKKLSEEYHKKLNSNI
QQRKSVSKNLKQRSKRGQPIMSNQIEHILEKVKKNNGL
Run BLAST on NCBI

transcript from alignment at scaffold_242:1776731..1779481-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054438 ID=TCONS_00054438|Name=TCONS_00054438|organism=Clytia hemisphaerica|type=transcript|length=2751bp|location=Sequence derived from alignment at scaffold_242:1776731..1779481- (Clytia hemisphaerica)
ACGGTTGTTGACAACCTGCTTGATCTTAAAGATTTCCTTTCAATTGAAGA
CTAAACTTTTTTGATAGTGATTATAATTAAAATAAAAAGAAAAGACAATA
TTGTTATGGGGAAGCCAGTCAAAAAGAATCAAACTGAAACACAGCCAGAT
GGTGCATTGAAATCTCAAAAGAGCAGCGCTGGTAAACGATTCAGGAACTT
CAAAAAAGGCGGAGGACTCCAACAATCTATAGGAAATGCTAGTAAAGGTA
TGTATTGCAATTTGCTTGTACTTTATTTTAGTCCATTGAAATCAAGTTTC
TTTTTGTATAATTGTCATAAAATTCATTCATTTATTTTTACTTTTTAGAT
TTTTCATTCAATTGTTGTATTTCATATCTTTATAATAATCTTTCTGATAT
TTTCACTTTTTCTAGAATGTAAATTTTTCTTTTTAAAAGTTAAAACCATT
GAATTCTTATTGTTTTTTTTTTCAGGACATGGTCTAACTCACAAAGCAAG
AATTTTGAGTCGTTTCAAGAAGCGTTTTCTCTCAAAAAGGAAGCAGAAAA
AAGAAACATTACATATCAAGCCTTTGGCTGAAGATATCAAAAGAGAACCA
ATACACTCACAAGCGGATCTAACTGAAAGGTAACACACAGTATACTTCAA
GAAATTGTCATGAGTCCGTGGGGGTTGCAATACTACTGTAGTACTCTGTA
GTACTGAGAGGTAAAAGCTTTTTGACTTTAAAAGGTATTTAAAGAATAAA
AATATGCCAAATATTTGATATTTATTACGATTTTGAGGTTTCATAGATTT
CCAATTTTTTGAGAGTTTTTAGCGAACATAATATACTTTCGCAAATTGCC
ATGTTAAGAATTTTCAAAGACATTTACTTTTGCAAAACAGGCCAAAATTC
GTGAAAATCACAAAAGTTTCTGCACAGTATATTTTTTAAAGAAATTGTCA
TGAGTCCAGGGCAGGGGTTGCAATACTGAAGTTTTTCTATACCACCACAT
AAAGATGGGTTGCCCCCTCTCCCACACATAAAAAAGTTTAATCGAAATAC
GTTATCAATTTGATGAGCAGCACCAGTTCTTAATGCCTTACAAGTTCTCA
TTTCTCTGAAGATGTCGTAAATGCCATTGTCCCTGCAAAAAGCTTGAAAT
TTAATGATTTTAAGTAGTTCAGACAAAAAGTTTAGCCTGAGAAGTATGAC
TTTTAGGTCGGACAAGGAACTAAGGACGGTTGGAATTTCTGATGGAAACT
ATTTTTATTTGCTTAGCGATCAGAGAGAAAAAAATCTATCAACGATTCCG
ACCTTCCTATGATTACCTTCTCTAAAGAAGGTTGTCGAAATTAGAAAGGG
ATGATGTCAACATTAGACCAACTTACAGTATTTGTTGGGTGAGTGAATGT
CTGATATCTGACTGTTATTTCAAGCCTTGACCACTGCACCCTTTTATCTG
TCTTATCCAACCTTCGTTGACTTTCACGTCCACCACGTGTCACATGTTAA
TCCTCTTGTTTGTTCTATTTGATATTTAGTAACACGACTGGCCTATCGTC
CCTTGCAATCGATGAATCTCCTACTCATAAAGGAAGGCTCACAGAAATTA
AAAAAGAAGAAGTTTTTGTTCTCAAACCAAGCCCAATAAAAACAGAAAGC
CCAAAAACATTATTCCAAAGAAAACAACAGGGCCCTAGATTGACTAGTTC
CAAATTAGCTTCTTCCAAGAACTCTAAATTTGATAATTCTGTTGTGAAAA
GGACTCACTCTGTGAATAATAAACGTGCGACAGACTCTATTGATGGGAAC
GATAATAAAAACAACACAGTCCAACCGAAAAAGCACTTCAAGAAGAACCC
CCTTGGAAGGAGTAATGATGACCTTTTGAAGATAGATTATCATGCCATAG
AAGAGGAAAGACAGAAAGAAGTTTTGGTAGGTTTCAAAGTATATTTATCT
TTCCATAGATATTTAAAGCAACTTTGACAAGGTTTATTTCATTCTACCAG
CAGCAGGACAGAGTATCAATAAACGTTTTTTTATAAGAACATGTTCTTAA
CTTTTTGAGTTTCAAGCCTAAAAGTATTCTTAACATGTTCCTATTTTCAC
CATTTTGTGAGTGTTTTTGCCATATTTCCTAAGAAATCGGTTGGTTTAGA
GTCCACCACAAAGACTTAAAATGATCTTAACTTGTTCTTAATATTTTGAT
CATCGAAGCCTTGTGTTCTTATATAGTTTGTTCTTATAAAAACGTTTACG
GCTTAAAATAGAGCTCTGAATAAGTAACTGATTTTTTTCTTTTCTTTCAT
TTTAGAAAATCCAAAGTAAGAAGTTATCAGAAGAATACCACAAAAAGTTG
AACAGCAATATCCAACAACGAAAATCTGTCAGTAAGAATTTGAAACAACG
AAGCAAGAGGGGTCAACCTATCATGTCTAATCAAATTGAACACATCCTGG
AAAAAGTGAAAAAGAACAATGGATTATGATATGTAAAAATCAGGGTTTGT
TAAACTGTCCTGTCTAAACCTAGCGTTACGTTTAATACTTTTAAAGGCTA
TAGAGTTTGTTAAGAATTGTCCNGTTACGTTTAATACTTTTAAAGACTAC
AGAGTTTGTTAAGAATTGTCCTCTCTAATGTTGTAATGTATCAAACTTTA
AAGCCTGCCGTCCACTAGGCTATTTTTAGCTATCGCGAAATAATCATCTA
TAAATAACACTGTCTATCGCGAAATAAACCTGTCCATCGCGTCATTTTAT
T

Coding sequence (CDS) from alignment at scaffold_242:1776731..1779481-

>TCONS_00054438 ID=TCONS_00054438|Name=TCONS_00054438|organism=Clytia hemisphaerica|type=CDS|length=3468bp|location=Sequence derived from alignment at scaffold_242:1776731..1779481- (Clytia hemisphaerica)
AAAATCCAAAGTAAGAAGTTATCAGAAGAATACCACAAAAAGTTGAACAG
CAATATCCAACAACGAAAATCTGTCAGTAAGAATTTGAAACAACGAAGCA
AGAGGGGTCAACCTATCATGTCTAATCAAATTGAACACATCCTGGAAAAA
GTGAAAAAGAACAATGGATTATGATAACACGACTGGCCTATCGTCCCTTG
CAATCGATGAATCTCCTACTCATAAAGGAAGGCTCACAGAAATTAAAAAA
GAAGAAGTTTTTGTTCTCAAACCAAGCCCAATAAAAACAGAAAGCCCAAA
AACATTATTCCAAAGAAAACAACAGGGCCCTAGATTGACTAGTTCCAAAT
TAGCTTCTTCCAAGAACTCTAAATTTGATAATTCTGTTGTGAAAAGGACT
CACTCTGTGAATAATAAACGTGCGACAGACTCTATTGATGGGAACGATAA
TAAAAACAACACAGTCCAACCGAAAAAGCACTTCAAGAAGAACCCCCTTG
GAAGGAGTAATGATGACCTTTTGAAGATAGATTATCATGCCATAGAAGAG
GAAAGACAGAAAGAAGTTTTGGACATGGTCTAACTCACAAAGCAAGAATT
TTGAGTCGTTTCAAGAAGCGTTTTCTCTCAAAAAGGAAGCAGAAAAAAGA
AACATTACATATCAAGCCTTTGGCTGAAGATATCAAAAGAGAACCAATAC
ACTCACAAGCGGATCTAACTGAAAGATGGGGAAGCCAGTCAAAAAGAATC
AAACTGAAACACAGCCAGATGGTGCATTGAAATCTCAAAAGAGCAGCGCT
GGTAAACGATTCAGGAACTTCAAAAAAGGCGGAGGACTCCAACAATCTAT
AGGAAATGCTAGTAAAGAAAATCCAAAGTAAGAAGTTATCAGAAGAATAC
CACAAAAAGTTGAACAGCAATATCCAACAACGAAAATCTGTCAGTAAGAA
TTTGAAACAACGAAGCAAGAGGGGTCAACCTATCATGTCTAATCAAATTG
AACACATCCTGGAAAAAGTGAAAAAGAACAATGGATTATGATAACACGAC
TGGCCTATCGTCCCTTGCAATCGATGAATCTCCTACTCATAAAGGAAGGC
TCACAGAAATTAAAAAAGAAGAAGTTTTTGTTCTCAAACCAAGCCCAATA
AAAACAGAAAGCCCAAAAACATTATTCCAAAGAAAACAACAGGGCCCTAG
ATTGACTAGTTCCAAATTAGCTTCTTCCAAGAACTCTAAATTTGATAATT
CTGTTGTGAAAAGGACTCACTCTGTGAATAATAAACGTGCGACAGACTCT
ATTGATGGGAACGATAATAAAAACAACACAGTCCAACCGAAAAAGCACTT
CAAGAAGAACCCCCTTGGAAGGAGTAATGATGACCTTTTGAAGATAGATT
ATCATGCCATAGAAGAGGAAAGACAGAAAGAAGTTTTGGACATGGTCTAA
CTCACAAAGCAAGAATTTTGAGTCGTTTCAAGAAGCGTTTTCTCTCAAAA
AGGAAGCAGAAAAAAGAAACATTACATATCAAGCCTTTGGCTGAAGATAT
CAAAAGAGAACCAATACACTCACAAGCGGATCTAACTGAAAGATGGGGAA
GCCAGTCAAAAAGAATCAAACTGAAACACAGCCAGATGGTGCATTGAAAT
CTCAAAAGAGCAGCGCTGGTAAACGATTCAGGAACTTCAAAAAAGGCGGA
GGACTCCAACAATCTATAGGAAATGCTAGTAAAGAAAATCCAAAGTAAGA
AGTTATCAGAAGAATACCACAAAAAGTTGAACAGCAATATCCAACAACGA
AAATCTGTCAGTAAGAATTTGAAACAACGAAGCAAGAGGGGTCAACCTAT
CATGTCTAATCAAATTGAACACATCCTGGAAAAAGTGAAAAAGAACAATG
GATTATGATAACACGACTGGCCTATCGTCCCTTGCAATCGATGAATCTCC
TACTCATAAAGGAAGGCTCACAGAAATTAAAAAAGAAGAAGTTTTTGTTC
TCAAACCAAGCCCAATAAAAACAGAAAGCCCAAAAACATTATTCCAAAGA
AAACAACAGGGCCCTAGATTGACTAGTTCCAAATTAGCTTCTTCCAAGAA
CTCTAAATTTGATAATTCTGTTGTGAAAAGGACTCACTCTGTGAATAATA
AACGTGCGACAGACTCTATTGATGGGAACGATAATAAAAACAACACAGTC
CAACCGAAAAAGCACTTCAAGAAGAACCCCCTTGGAAGGAGTAATGATGA
CCTTTTGAAGATAGATTATCATGCCATAGAAGAGGAAAGACAGAAAGAAG
TTTTGGACATGGTCTAACTCACAAAGCAAGAATTTTGAGTCGTTTCAAGA
AGCGTTTTCTCTCAAAAAGGAAGCAGAAAAAAGAAACATTACATATCAAG
CCTTTGGCTGAAGATATCAAAAGAGAACCAATACACTCACAAGCGGATCT
AACTGAAAGATGGGGAAGCCAGTCAAAAAGAATCAAACTGAAACACAGCC
AGATGGTGCATTGAAATCTCAAAAGAGCAGCGCTGGTAAACGATTCAGGA
ACTTCAAAAAAGGCGGAGGACTCCAACAATCTATAGGAAATGCTAGTAAA
GAAAATCCAAAGTAAGAAGTTATCAGAAGAATACCACAAAAAGTTGAACA
GCAATATCCAACAACGAAAATCTGTCAGTAAGAATTTGAAACAACGAAGC
AAGAGGGGTCAACCTATCATGTCTAATCAAATTGAACACATCCTGGAAAA
AGTGAAAAAGAACAATGGATTATGATAACACGACTGGCCTATCGTCCCTT
GCAATCGATGAATCTCCTACTCATAAAGGAAGGCTCACAGAAATTAAAAA
AGAAGAAGTTTTTGTTCTCAAACCAAGCCCAATAAAAACAGAAAGCCCAA
AAACATTATTCCAAAGAAAACAACAGGGCCCTAGATTGACTAGTTCCAAA
TTAGCTTCTTCCAAGAACTCTAAATTTGATAATTCTGTTGTGAAAAGGAC
TCACTCTGTGAATAATAAACGTGCGACAGACTCTATTGATGGGAACGATA
ATAAAAACAACACAGTCCAACCGAAAAAGCACTTCAAGAAGAACCCCCTT
GGAAGGAGTAATGATGACCTTTTGAAGATAGATTATCATGCCATAGAAGA
GGAAAGACAGAAAGAAGTTTTGGACATGGTCTAACTCACAAAGCAAGAAT
TTTGAGTCGTTTCAAGAAGCGTTTTCTCTCAAAAAGGAAGCAGAAAAAAG
AAACATTACATATCAAGCCTTTGGCTGAAGATATCAAAAGAGAACCAATA
CACTCACAAGCGGATCTAACTGAAAGATGGGGAAGCCAGTCAAAAAGAAT
CAAACTGAAACACAGCCAGATGGTGCATTGAAATCTCAAAAGAGCAGCGC
TGGTAAACGATTCAGGAACTTCAAAAAAGGCGGAGGACTCCAACAATCTA
TAGGAAATGCTAGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034306XLOC_034306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054438-exon-scaffold_242-1575043694:1779235..1779481TCONS_00054438-exon-scaffold_242-1575043694:1779235..1779481Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1575043694:1778853..1779006TCONS_00054438-exon-scaffold_242-1575043694:1778853..1779006Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1575043694:1777556..1777952TCONS_00054438-exon-scaffold_242-1575043694:1777556..1777952Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1575043694:1776936..1777176TCONS_00054438-exon-scaffold_242-1575043694:1776936..1777176Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1575043694:1776731..1776886TCONS_00054438-exon-scaffold_242-1575043694:1776731..1776886Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1510915933:1779235..1779481TCONS_00054438-exon-scaffold_242-1510915933:1779235..1779481Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1510915933:1778853..1779006TCONS_00054438-exon-scaffold_242-1510915933:1778853..1779006Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1510915933:1777556..1777952TCONS_00054438-exon-scaffold_242-1510915933:1777556..1777952Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1510915933:1776936..1777176TCONS_00054438-exon-scaffold_242-1510915933:1776936..1777176Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1510915933:1776731..1776886TCONS_00054438-exon-scaffold_242-1510915933:1776731..1776886Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1491911889:1779235..1779481TCONS_00054438-exon-scaffold_242-1491911889:1779235..1779481Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1491911889:1778853..1779006TCONS_00054438-exon-scaffold_242-1491911889:1778853..1779006Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1491911889:1777556..1777952TCONS_00054438-exon-scaffold_242-1491911889:1777556..1777952Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1491911889:1776936..1777176TCONS_00054438-exon-scaffold_242-1491911889:1776936..1777176Clytia hemisphaericaexon
TCONS_00054438-exon-scaffold_242-1491911889:1776731..1776886TCONS_00054438-exon-scaffold_242-1491911889:1776731..1776886Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054438-proteinTCONS_00054438-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1776731..1779481 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.22591	4.7387	2.79894	3.16205	22.9315	14.7646	12.904	13.4548	9.9721	8.62912	7.33037	7.21887	5.54427	4.42229	7.71907	10.1252	15.4004	14.757	6.24245	4.4425	12.3303	10.8991	19.9211	20.7281	6.24771	5.42373	7.00332	4.4123	13.3087	13.6296
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013730Fyv7/TAP26
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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