TCONS_00054443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054443
Unique NameTCONS_00054443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054443 ID=TCONS_00054443|Name=TCONS_00054443|organism=Clytia hemisphaerica|type=transcript|length=993bp
NAACAATCTATAGGAAATGCTAGTAAAGggcaTGGTCTAACTCACAAAGC
AAGAATTTTGAGTCGCTTCAAGAAGCGTTTTCTCTCGAAAAGGAAGcaga
aaaaagaaacattacATATCAAGCCTTTGGCTGAAGATATCAAAAGAGAA
CCAATACACTCACAAGCGGATCTAACTGAAAGtaACACGTCTGGCCTATC
GTCCCTCGCAATCGATGAATCTCCTACTCATAAAGGAAGGCTCACagaaa
tcaaaaaagaagaagtttttGTTCTCAAACCAAGCCCAATAAAAGCAGAA
AGCCCAAAAATATTATTCCAAAGAAAACAACAGGGCCCTAGATTGACTAG
TTCCAAATTAGCTTCTTCCAAGAACTCTAAATTTGATAATTCTGTTGTGA
AAAGGACTCACTCTGTGAATAATAAACGTGCGACAGACTCTATTGATGGG
AACGATAATAAAAACAACACAGTCCAACCGAAAAAGCACTTCAAGAAGAA
TCCCCTTGGAAGGAGTAATGACGACCTTTTGAAGATCGATTATCATGCCA
TAGAAGAGGAAAGACAGAAAGAAGTTTTGaaaatccaaaGTAAGAAGTTA
TCAGAAGAATACCACAAAAAGTTGAACAGCAATATCCAACAACGAAAATC
TGTCAGTAAGAATTTGAAACAACGAAGCAAGAGGGGTCAACCTATCATGT
CTAATCAAATTGAACACATCctggaaaaagtgaaaaagaacaATGGATTA
TGATATGTAAAAATCAGGGTTTGTTAAACTGTCCTGTCTAAACCTAGCGT
TACGTTTAATACTTTTAAAGGCTATAGAGTTTGTTAAGAATTGTCCTCTC
TAATGTTTGTATCAAACTTTAAAGCCTGCCGtccactacacgtttttttt
tataagaacgtcaaaaattttcgaagccttcggatgttcttagttttttg
gatttgaagccaaaaatgttcttaaaatattcttattttcagc
Run BLAST on NCBI

transcript from alignment at scaffold_242:1790332..1792661-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054443 ID=TCONS_00054443|Name=TCONS_00054443|organism=Clytia hemisphaerica|type=transcript|length=2330bp|location=Sequence derived from alignment at scaffold_242:1790332..1792661- (Clytia hemisphaerica)
NAACAATCTATAGGAAATGCTAGTAAAGGTATGTATTGCAATTTGCTTGT
ACTTTATTTTAGTCTATTGAAATCAAGTTTCTTTTTGTATAAATTGTCAT
AAAATTCATTCATTTATTTTTACTTTTTAAATTTTTCATTCAATTGTTGT
ATTTCATATCTTTATATGAATAATCTTTCTGATATTTTCACTTTTTCTAG
AATGTAAATTTTTCTTTTTAAAAGTTAAAACCATTGAATTTTTATTGTTT
TTTTTTTTCAGGGCATGGTCTAACTCACAAAGCAAGAATTTTGAGTCGCT
TCAAGAAGCGTTTTCTCTCGAAAAGGAAGCAGAAAAAAGAAACATTACAT
ATCAAGCCTTTGGCTGAAGATATCAAAAGAGAACCAATACACTCACAAGC
GGATCTAACTGAAAGGTAACACACAGTATGCTTCAAGAAATTGTCGTGAG
TCCGGGGGTTGCAATACTACTGTAGTACTGAAAGGTAAAAGCTTTTTGAC
TTTTAAAAAGGCATTAAAGGATAAAAATATGCCGAAAATTTGATATTTAT
TACAATTTTGAGGTTTTTTTTGAGTTTTTCGCGAGCATAATATACTTTCA
CAAATTACCCTGCTAAGAATTTTCAAAGACATTTACTTTTGCAAAAGGGG
CCAAAATTCGCGAAAATCGCAAAAGTTTGTGCACAGTATACTTTTTAAAG
AAATTGTCATGAGTCCAGGGCAGGGGTTGCAATACTGTAGTTTTTCTATA
CCACACACATAAGCTGGGTCGCCCTCCCTCTCCCACACATAAAAAGAGTT
GAATCAAAATGATTAAATTAATGAGCAACACTAGTCCTTTAAATGTCTTA
GAAGTTCTCATTTCTCGGAAGATGTCGTAAATGCCATTGTCCCTGCAAAA
AGATTGAATTATTAAAATAAACTACAAAATAATAAAAATAATACAATAAA
AGATTATTTCAAGCCTTGCCCACTGCACCCTTTTATCTGTCTTATCCAAG
CTTCATTGACTTTCACTCCCACCACGTGTCAAATGTTAATCCTCTTGTTT
GTTTTGATATTTAGTAACACGTCTGGCCTATCGTCCCTCGCAATCGATGA
ATCTCCTACTCATAAAGGAAGGCTCACAGAAATCAAAAAAGAAGAAGTTT
TTGTTCTCAAACCAAGCCCAATAAAAGCAGAAAGCCCAAAAATATTATTC
CAAAGAAAACAACAGGGCCCTAGATTGACTAGTTCCAAATTAGCTTCTTC
CAAGAACTCTAAATTTGATAATTCTGTTGTGAAAAGGACTCACTCTGTGA
ATAATAAACGTGCGACAGACTCTATTGATGGGAACGATAATAAAAACAAC
ACAGTCCAACCGAAAAAGCACTTCAAGAAGAATCCCCTTGGAAGGAGTAA
TGACGACCTTTTGAAGATCGATTATCATGCCATAGAAGAGGAAAGACAGA
AAGAAGTTTTGGTAGGTTTCAAAGTATATTTATCTTTCCATGGCTATTTA
AAGCAACTTTGACAAGGCTTATTTCATTCTACCAGCAGCAGAACAGAGTA
TCAATAAACGTTTTTTATAAGAACATGTTCTTAACTTTTTGAGTTTCAAG
CCTAAAAGTATTCTTAACATGTTCCTATTTTCACCATTTTGTGAGTGTTT
TTGCCATATTTCCTAAGAAATCGGTTGGTTTAGAGTCCACTACAAAGACT
TCAAATGATCTTACCTTGTTCTTAGTATTTTGATCATCGAAGCCTTGTGT
TCTTATATAGTTTGTTCTTATAAAAACGTTTACGGCTTAAAATAGAGCTA
TGAATAAGAAACTGATNAGCCTTGTGTTCTTATATAGTTTGTTCTTATAA
AAACGTTTACGGCTTAAAATAGAGCTCTGAATAAGTAACTGATTTTTTTC
TTTTCTTTCATTTTAGAAAATCCAAAGTAAGAAGTTATCAGAAGAATACC
ACAAAAAGTTGAACAGCAATATCCAACAACGAAAATCTGTCAGTAAGAAT
TTGAAACAACGAAGCAAGAGGGGTCAACCTATCATGTCTAATCAAATTGA
ACACATCCTGGAAAAAGTGAAAAAGAACAATGGATTATGATATGTAAAAA
TCAGGGTTTGTTAAACTGTCCTGTCTAAACCTAGCGTTACGTTTAATACT
TTTAAAGGCTATAGAGTTTGTTAAGAATTGTCCTCTCTAATGTTTGTATC
AAACTTTAAAGCCTGCCGTCCACTACACGTTTTTTTTTATAAGAACGTCA
AAAATTTTCGAAGCCTTCGGATGTTCTTAGTTTTTTGGATTTGAAGCCAA
AAATGTTCTTAAAATATTCTTATTTTCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034306XLOC_034306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054443-exon-scaffold_242-1575043694:1792634..1792661TCONS_00054443-exon-scaffold_242-1575043694:1792634..1792661Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1575043694:1792247..1792400TCONS_00054443-exon-scaffold_242-1575043694:1792247..1792400Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1575043694:1791201..1791597TCONS_00054443-exon-scaffold_242-1575043694:1791201..1791597Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1575043694:1790332..1790745TCONS_00054443-exon-scaffold_242-1575043694:1790332..1790745Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1510915933:1792634..1792661TCONS_00054443-exon-scaffold_242-1510915933:1792634..1792661Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1510915933:1792247..1792400TCONS_00054443-exon-scaffold_242-1510915933:1792247..1792400Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1510915933:1791201..1791597TCONS_00054443-exon-scaffold_242-1510915933:1791201..1791597Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1510915933:1790332..1790745TCONS_00054443-exon-scaffold_242-1510915933:1790332..1790745Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1491911889:1792634..1792661TCONS_00054443-exon-scaffold_242-1491911889:1792634..1792661Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1491911889:1792247..1792400TCONS_00054443-exon-scaffold_242-1491911889:1792247..1792400Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1491911889:1791201..1791597TCONS_00054443-exon-scaffold_242-1491911889:1791201..1791597Clytia hemisphaericaexon
TCONS_00054443-exon-scaffold_242-1491911889:1790332..1790745TCONS_00054443-exon-scaffold_242-1491911889:1790332..1790745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1790332..1792661 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.86685	0.714792	0.379418	0.74065	18.4142	12.5004	11.9058	13.5597	5.70143	9.35445	0.851291	3.01144	4.03207	2.0959	0.93313	0.891541	2.18636	1.02931	0.452099	1.31342	2.18287	2.94316	4.11368	3.46201	12.6544	12.7422	1.12922	0.909462	3.76022	2.80411
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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