TCONS_00054449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054449
Unique NameTCONS_00054449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054449 ID=TCONS_00054449|Name=TCONS_00054449|organism=Clytia hemisphaerica|type=transcript|length=319bp
CATTAAGATGAGGAAAATCAATGGTCCCAAAACACTCCCTTGTGGGACGC
CTGATATGACAGGTGTTGGGTTAGATGGAGTCCCATCCACTAGTACGGTT
AGATAGCGATTGGTTAAAAACGATTGTAACCATTTCAAGACTTTTCCACC
AATACCAAGATTTTGAACTTTGGTAAGAGCTGGTAAGAGCGAGGTTTAAG
TCCACTTTGTCGAATGCTTTGGAGAAATCAAGGTAGACAACATCTGCATT
CTTGCCTTGCTCGAGTAGAGATAAAATCTCATCGTAGTGTGACAAAAGTT
GACTGAGGCATGATCTGCN
Run BLAST on NCBI

transcript from alignment at scaffold_242:190571..190889

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054449 ID=TCONS_00054449|Name=TCONS_00054449|organism=Clytia hemisphaerica|type=transcript|length=319bp|location=Sequence derived from alignment at scaffold_242:190571..190889 (Clytia hemisphaerica)
NGCAGATCATGCCTCAGTCAACTTTTGTCACACTACGATGAGATTTTATC
TCTACTCGAGCAAGGCAAGAATGCAGATGTTGTCTACCTTGATTTCTCCA
AAGCATTCGACAAAGTGGACTTAAACCTCGCTCTTACCAGCTCTTACCAA
AGTTCAAAATCTTGGTATTGGTGGAAAAGTCTTGAAATGGTTACAATCGT
TTTTAACCAATCGCTATCTAACCGTACTAGTGGATGGGACTCCATCTAAC
CCAACACCTGTCATATCAGGCGTCCCACAAGGGAGTGTTTTGGGACCATT
GATTTTCCTCATCTTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034313XLOC_034313Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054449-exon-scaffold_242-1491911889:190571..190889TCONS_00054449-exon-scaffold_242-1491911889:190571..190889Clytia hemisphaericaexon
TCONS_00054449-exon-scaffold_242-1510915933:190571..190889TCONS_00054449-exon-scaffold_242-1510915933:190571..190889Clytia hemisphaericaexon
TCONS_00054449-exon-scaffold_242-1575043694:190571..190889TCONS_00054449-exon-scaffold_242-1575043694:190571..190889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:190571..190889 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35682	3.28535	2.86078	3.67758	0	1.24932	2.7108	1.64412	0.815243	2.27642	0.326716	0.800153	1.63184	0.494179	1.30749	0.569647	1.56637	2.71007	1.57718	0.776179	2.17757	1.32347	0	0	2.42363	2.43204	0.623829	4.74496	3.22353	2.91737
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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