TCONS_00054452 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054452
Unique NameTCONS_00054452
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054452 ID=TCONS_00054452|Name=TCONS_00054452|organism=Clytia hemisphaerica|type=transcript|length=1299bp
CttaataaaacatgaaaaaaagcAACTGTAATTGAGAAATATCAGAAAGA
GGTATAATGTTTAAAAGTAGAAATAGAGGAGAAATCAGATGTGATACGTA
GTTGTCGGGGAAAgctgaaatatttttggaagAAATTTAAACGATGAGCA
GGGTTGCAATCATTGGAGGAGGACCATGTGCTATGTCAGCAATGGTCGCT
TTTTCGAAAGCAGAACTCGAGGGAGAAGCTATACCAGAGATCGTATGTTT
TGAAAAGCAAGCTAAGTTAGGAGGACAATGGAACTTCACTTGGCACTCTG
GAGTCGATGAGCACGGTGTGCCAATATCAAATTCAATGTACGAAGGCTTA
TTTTCAAATAGTCCAAAAGAGTTGAAAGAATTTTACGATTACACGTTCGA
TGAACATTTTGGAAAAGCAATTCCTTCCTATATCCGTCGGGAATCGGTGC
TTGAATACCTCATGGGAAGAGCTGCAAAATATAACATAGATCGGTTTGTG
AAAAGCTCAACTCTGGTGCGAGATGTTAAAAGTTTAAACAAAGACCAGTT
CAAAGTGAACTATGAGGATCTGGTAACTAATGAGATCAACGAAGAGATTT
TCGATTACATAATCGTTGCCAGTGGTAGATTCACAACACCAAATATCCCA
CAATTACCCGGTATTGAAACTTTTCCTGGACGTGTTTTCCATTCACATGA
GTTACGACGCATGGACGAGCTCAGATCTGGTGACAATTTGCCAATTCTAC
TCATAGGTTCAGGATTGAGTGGTATCGATATTGCATTAAGTCAGCATAAA
TATATTGGTGGGAAAACATTGTTATCGAATCGGGGTTCAATAAAAATCCC
AATTAATTATCCTAATACTGTCCAACCTGTTTCCGAGCTGATCAACATTT
CAGGAAGACAATGCACATTTAAGGATGGCTCTAAACACGAAGTTAGTCAA
ATAATCTTCTGTACAGGTTATCAATTTCGTTATCCTTTTCTCGAGCAATC
TTTAAGATTCAATGGTCCACCAAACACATTCTTCCCTGACAACCTCTACA
AATGTGTTTTATTACCTCATAATCCGAGAGTTGGGTACATGGGAATGCAa
gctattttttcttttccaatgTACGATTGCCAAGCCTGGTTCTTAAAAGA
ACACATCCTTGGTAAATTGAAATTGCCAGGTGTTCAAGAAATTAAGAATG
ATATAGATGTTTGGCAACAACATTTGGTTGAAGTGAATAAAAAGGAAGGT
TTGATTGGAAGAATCAAATTTCTGGTGGATTATATGAAAGATATCATTT
Run BLAST on NCBI

protein sequence of TCONS_00054452-protein

>TCONS_00054452-protein ID=TCONS_00054452-protein|Name=TCONS_00054452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
MSRVAIIGGGPCAMSAMVAFSKAELEGEAIPEIVCFEKQAKLGGQWNFTW
HSGVDEHGVPISNSMYEGLFSNSPKELKEFYDYTFDEHFGKAIPSYIRRE
SVLEYLMGRAAKYNIDRFVKSSTLVRDVKSLNKDQFKVNYEDLVTNEINE
EIFDYIIVASGRFTTPNIPQLPGIETFPGRVFHSHELRRMDELRSGDNLP
ILLIGSGLSGIDIALSQHKYIGGKTLLSNRGSIKIPINYPNTVQPVSELI
NISGRQCTFKDGSKHEVSQIIFCTGYQFRYPFLEQSLRFNGPPNTFFPDN
LYKCVLLPHNPRVGYMGMQAIFSFPMYDCQAWFLKEHILGKLKLPGVQEI
KNDIDVWQQHLVEVNKKEGLIGRIKFLVDYMKDII
Run BLAST on NCBI

transcript from alignment at scaffold_242:443051..444349

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054452 ID=TCONS_00054452|Name=TCONS_00054452|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at scaffold_242:443051..444349 (Clytia hemisphaerica)
AAATGATATCTTTCATATAATCCACCAGAAATTTGATTCTTCCAATCAAA
CCTTCCTTTTTATTCACTTCAACCAAATGTTGTTGCCAAACATCTATATC
ATTCTTAATTTCTTGAACACCTGGCAATTTCAATTTACCAAGGATGTGTT
CTTTTAAGAACCAGGCTTGGCAATCGTAcattggaaaagaaaaaatagct
TGCATTCCCATGTACCCAACTCTCGGATTATGAGGTAATAAAACACATTT
GTAGAGGTTGTCAGGGAAGAATGTGTTTGGTGGACCATTGAATCTTAAAG
ATTGCTCGAGAAAAGGATAACGAAATTGATAACCTGTACAGAAGATTATT
TGACTAACTTCGTGTTTAGAGCCATCCTTAAATGTGCATTGTCTTCCTGA
AATGTTGATCAGCTCGGAAACAGGTTGGACAGTATTAGGATAATTAATTG
GGATTTTTATTGAACCCCGATTCGATAACAATGTTTTCCCACCAATATAT
TTATGCTGACTTAATGCAATATCGATACCACTCAATCCTGAACCTATGAG
TAGAATTGGCAAATTGTCACCAGATCTGAGCTCGTCCATGCGTCGTAACT
CATGTGAATGGAAAACACGTCCAGGAAAAGTTTCAATACCGGGTAATTGT
GGGATATTTGGTGTTGTGAATCTACCACTGGCAACGATTATGTAATCGAA
AATCTCTTCGTTGATCTCATTAGTTACCAGATCCTCATAGTTCACTTTGA
ACTGGTCTTTGTTTAAACTTTTAACATCTCGCACCAGAGTTGAGCTTTTC
ACAAACCGATCTATGTTATATTTTGCAGCTCTTCCCATGAGGTATTCAAG
CACCGATTCCCGACGGATATAGGAAGGAATTGCTTTTCCAAAATGTTCAT
CGAACGTGTAATCGTAAAATTCTTTCAACTCTTTTGGACTATTTGAAAAT
AAGCCTTCGTACATTGAATTTGATATTGGCACACCGTGCTCATCGACTCC
AGAGTGCCAAGTGAAGTTCCATTGTCCTCCTAACTTAGCTTGCTTTTCAA
AACATACGATCTCTGGTATAGCTTCTCCCTCGAGTTCTGCTTTCGAAAAA
GCGACCATTGCTGACATAGCACATGGTCCTCCTCCAATGATTGCAACCCT
GCTCATCGTTTAAATTTcttccaaaaatatttcagcTTTCCCCGACAACT
ACGTATCACATCTGATTTCTCCTCTATTTCTACTTTTAAACATTATACCT
CTTTCTGATATTTCTCAATTACAGTTgctttttttcatgttttattaaG

Coding sequence (CDS) from alignment at scaffold_242:443051..444349

>TCONS_00054452 ID=TCONS_00054452|Name=TCONS_00054452|organism=Clytia hemisphaerica|type=CDS|length=1155bp|location=Sequence derived from alignment at scaffold_242:443051..444349 (Clytia hemisphaerica)
AATGATATCTTTCATATAATCCACCAGAAATTTGATTCTTCCAATCAAAC
CTTCCTTTTTATTCACTTCAACCAAATGTTGTTGCCAAACATCTATATCA
TTCTTAATTTCTTGAACACCTGGCAATTTCAATTTACCAAGGATGTGTTC
TTTTAAGAACCAGGCTTGGCAATCGTAcattggaaaagaaaaaatagctT
GCATTCCCATGTACCCAACTCTCGGATTATGAGGTAATAAAACACATTTG
TAGAGGTTGTCAGGGAAGAATGTGTTTGGTGGACCATTGAATCTTAAAGA
TTGCTCGAGAAAAGGATAACGAAATTGATAACCTGTACAGAAGATTATTT
GACTAACTTCGTGTTTAGAGCCATCCTTAAATGTGCATTGTCTTCCTGAA
ATGTTGATCAGCTCGGAAACAGGTTGGACAGTATTAGGATAATTAATTGG
GATTTTTATTGAACCCCGATTCGATAACAATGTTTTCCCACCAATATATT
TATGCTGACTTAATGCAATATCGATACCACTCAATCCTGAACCTATGAGT
AGAATTGGCAAATTGTCACCAGATCTGAGCTCGTCCATGCGTCGTAACTC
ATGTGAATGGAAAACACGTCCAGGAAAAGTTTCAATACCGGGTAATTGTG
GGATATTTGGTGTTGTGAATCTACCACTGGCAACGATTATGTAATCGAAA
ATCTCTTCGTTGATCTCATTAGTTACCAGATCCTCATAGTTCACTTTGAA
CTGGTCTTTGTTTAAACTTTTAACATCTCGCACCAGAGTTGAGCTTTTCA
CAAACCGATCTATGTTATATTTTGCAGCTCTTCCCATGAGGTATTCAAGC
ACCGATTCCCGACGGATATAGGAAGGAATTGCTTTTCCAAAATGTTCATC
GAACGTGTAATCGTAAAATTCTTTCAACTCTTTTGGACTATTTGAAAATA
AGCCTTCGTACATTGAATTTGATATTGGCACACCGTGCTCATCGACTCCA
GAGTGCCAAGTGAAGTTCCATTGTCCTCCTAACTTAGCTTGCTTTTCAAA
ACATACGATCTCTGGTATAGCTTCTCCCTCGAGTTCTGCTTTCGAAAAAG
CGACCATTGCTGACATAGCACATGGTCCTCCTCCAATGATTGCAACCCTG
CTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034316XLOC_034316Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054452-proteinTCONS_00054452-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054452-exon-scaffold_242-1491911889:443051..444349TCONS_00054452-exon-scaffold_242-1491911889:443051..444349Clytia hemisphaericaexon
TCONS_00054452-exon-scaffold_242-1510915933:443051..444349TCONS_00054452-exon-scaffold_242-1510915933:443051..444349Clytia hemisphaericaexon
TCONS_00054452-exon-scaffold_242-1575043694:443051..444349TCONS_00054452-exon-scaffold_242-1575043694:443051..444349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:443051..444349 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.260387	0.0952194	0.0737059	0.0360549	3.292	2.11579	4.77045	5.28873	1.70053	1.93651	1.94558	2.01597	1.94822	1.86588	2.569	4.38333	4.1049	4.03209	2.17978	3.18613	2.36022	2.67086	1.41813	2.44287	1.74729	2.43268	0.981867	1.04787	1.26442	0.368069
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
IPR020946Flavin_mOase-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0004499N,N-dimethylaniline monooxygenase activity
GO:0050661NADP binding
GO:0050660flavin adenine dinucleotide binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0004499 N,N-dimethylaniline monooxygenase activity
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00054452 vs. Swiss-Prot (Human)
Match: FMO1 (Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Homo sapiens GN=FMO1 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 9.563e-19
Identity = 62/193 (32.12%), Postives = 95/193 (49.22%), Query Frame = 3 
Query:  150 RVAIIGGGPCAMSAMVAFSKAELEGEAIPEIVCFEKQAKLGGQWNFTWHSGVDEHGVPISNSMYEGLFSNSPKELKEFYDYTFDEHFGKAIPSYIRRESVLEYLMGRAAKYNIDRFVKSSTLVRDVKSLNKDQFKVNYEDLVTNEINEE--IFDYIIVASGRFTTPNIP--QLPGIETFPGRVFHSHELRRMD 716
            RVAI+G G   ++++    K  LE    P   CFE+   LGG W FT H    E G     S+Y+ + SNS KE+  + D+ F E +    P+Y+     LEYL   A  +++ + ++  T V  V   +       +E +  +E  +E  IFD ++V +G  T P +P    PGI  F G+ FHS + +  D
Sbjct:    4 RVAIVGAGVSGLASI----KCCLEEGLEP--TCFERSDDLGGLWRFTEHV---EEG---RASLYKSVVSNSCKEMSCYSDFPFPEDY----PNYVPNSQFLEYLKMYANHFDLLKHIQFKTKVCSVTKCSDSAVSGQWEVVTMHEEKQESAIFDAVMVCTGFLTNPYLPLDSFPGINAFKGQYFHSRQYKHPD 180
The following BLAST results are available for this feature:
BLAST of TCONS_00054452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMO19.563e-1932.12Dimethylaniline monooxygenase [N-oxide-forming] 1 ... [more]
back to top