TCONS_00054468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054468
Unique NameTCONS_00054468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054468 ID=TCONS_00054468|Name=TCONS_00054468|organism=Clytia hemisphaerica|type=transcript|length=438bp
TGGATAAATACGTTGGTCAAGCTACTGCAAGTATCAGAGATACTTAGATG
GAATAATAGTATGTTATATGGTGTAAATGTTCCCCCGTTTGTTGAGCTAC
TGATATATAAAGCATATGCGGCCATTACACTTCCAAAAGCCATTATACCT
GACATAACGATTTCTGTTTGTATTAATGTAGATCTTTCTTCGGCTGTTAA
GAATCGTAAATCATCCATAACTGATGGAATACATTGATCAGTGTGATCCT
GAGAAGTTATGTTAAAATTGAACCTTGTCTTATTCGGTAGTGAAAGTCCG
GTGAAATTGAGGTTATTGAGTTGGTTAGAtgtgttgaaaaatgttgacag
ATTCATCTGCgtaattttgatttcttttctttgtgTATTGctattgattt
tatttaaaattctaaagaaaaatagacCAAAATAAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_242:945359..945796

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054468 ID=TCONS_00054468|Name=TCONS_00054468|organism=Clytia hemisphaerica|type=transcript|length=438bp|location=Sequence derived from alignment at scaffold_242:945359..945796 (Clytia hemisphaerica)
CGCTTATTTTGgtctatttttctttagaattttaaataaaatcaatagCA
ATAcacaaagaaaagaaatcaaaattacGCAGATGAATctgtcaacattt
ttcaacacaTCTAACCAACTCAATAACCTCAATTTCACCGGACTTTCACT
ACCGAATAAGACAAGGTTCAATTTTAACATAACTTCTCAGGATCACACTG
ATCAATGTATTCCATCAGTTATGGATGATTTACGATTCTTAACAGCCGAA
GAAAGATCTACATTAATACAAACAGAAATCGTTATGTCAGGTATAATGGC
TTTTGGAAGTGTAATGGCCGCATATGCTTTATATATCAGTAGCTCAACAA
ACGGGGGAACATTTACACCATATAACATACTATTATTCCATCTAAGTATC
TCTGATACTTGCAGTAGCTTGACCAACGTATTTATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034332XLOC_034332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054468-exon-scaffold_242-1491911889:945359..945796TCONS_00054468-exon-scaffold_242-1491911889:945359..945796Clytia hemisphaericaexon
TCONS_00054468-exon-scaffold_242-1510915933:945359..945796TCONS_00054468-exon-scaffold_242-1510915933:945359..945796Clytia hemisphaericaexon
TCONS_00054468-exon-scaffold_242-1575043694:945359..945796TCONS_00054468-exon-scaffold_242-1575043694:945359..945796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:945359..945796 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.78852	2.42411	0.65276	0.16171	0	0.206358	0	0	0	0	0	0.119205	0	0	0.29958	0	0.177634	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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