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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054475 ID=TCONS_00054475|Name=TCONS_00054475|organism=Clytia hemisphaerica|type=transcript|length=1335bp
ctcggaactcgtaaaatatttctcatattgtactcgcaactgtccgataa
ctattggTAGGGGGGAGTGtaagtttgattttttcaaagacGCATACAAA
AACGTCAAAGACGTTGTTTGACGTCTTCAAGAGATCGAATGTCTTTCAAA
AGAATGTCGAAATTCCTTGCTGGAACGCATTCGATGCCGCACAGTACTTC
GGCTGCCGTAATTGTCGCATTTGAtactggagtttgcactcctgCTACCT
TGGCTAAAAATCTCATGATAGGCACTAATACATAATTCAAATCTTCCGTG
ATATATCGGTTCCGCAAACTGTTGGGTGCTTTGATAGCATGATATAAGGG
CCCACGATTGGCCACAAATTCTCTCAGTGTTTTGGCTTTGTGGTCAGTGT
ACCATCTACAAGCAATCTGAAGGTAATCTTCATCTTTATAACCAAAGGCT
TTGCAAACTTCTCTTCGTTCTTTATCAATAGcctttatcatattttcaat
aGCTTCAGTCATACCTacattgtaaaaataaaaatttcccttcGTTGCTT
CAATCCAGCCAGcattataaattaaatttccagGGTGTATCACCATGTTC
AAGTTCGACAGTGCAGCTTCAAGAATATCTTTTGCTCTCCatattttcaa
ttcaaaaagtGGTTGTATTCTATCCAAAACAATGTCGGTTCTCGTACTCG
GGAAGACACCAAACTTGATACAATCTTTCGACCCTgcgataaaaatttta
tttcctcCAACTTTGCGACAGGTGTACGGTAAAGTACTGGCTTCAACAAC
AGCAAAAGGAACAGGAATCTTGGTCATATGGAGATGGTCGTTATCAGGAC
TATCAGctctgggaaattttttttgcacccGTTGTACAAATTCCAATGTT
GCAAAATTTCCTGGTAAGCAAACTAGGACATGGTTTGCAGTGAGATAGGG
CAGCGCTTTCTCGAATATAGGTACTTGTCCAAAAGCTGGAACAACCAGCA
TCAAATTGTTCGCAAACTCAACAGCTTCTTTGATGTCGAAGGTTGTCTTA
GCAATGTTAACTTCACCGTGCAACATGGATGCATGGCCATCAACTTCTTC
TATGGCAATAATTTTCCCAGTCTCTACCACAGCTTGTAGGTGTTCTTTAG
ACTCCTCACGTTGGTAGATCAAAACCTCGTGTCCCATTTTCGACATATGA
AATGCCATGGCAAAGCCTCCATTTCCAGTTCCAAGTATTGTTACTttcat
tttgttcaattttcgtGTAGATTAGAtctaaaaacaagataaaataGATG
CTACAAAAGATGTACAAAAATATAAGATAATAAAA Run BLAST on NCBI protein sequence of TCONS_00054475-protein >TCONS_00054475-protein ID=TCONS_00054475-protein|Name=TCONS_00054475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MKVTILGTGNGGFAMAFHMSKMGHEVLIYQREESKEHLQAVVETGKIIAI
EEVDGHASMLHGEVNIAKTTFDIKEAVEFANNLMLVVPAFGQVPIFEKAL
PYLTANHVLVCLPGNFATLEFVQRVQKKFPRADSPDNDHLHMTKIPVPFA
VVEASTLPYTCRKVGGNKIFIAGSKDCIKFGVFPSTRTDIVLDRIQPLFE
LKIWRAKDILEAALSNLNMVIHPGNLIYNAGWIEATKGNFYFYNVGMTEA
IENMIKAIDKERREVCKAFGYKDEDYLQIACRWYTDHKAKTLREFVANRG
PLYHAIKAPNSLRNRYITEDLNYVLVPIMRFLAKVAGVQTPVSNATITAA
EVLCGIECVPARNFDILLKDIRSLEDVKQRL Run BLAST on NCBI transcript from alignment at scaffold_242:1078683..1080017 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054475 ID=TCONS_00054475|Name=TCONS_00054475|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at scaffold_242:1078683..1080017 (Clytia hemisphaerica)
TTTTATTATCTTATATTTTTGTACATCTTTTGTAGCATCtattttatctt
gtttttagaTCTAATCTACacgaaaattgaacaaaatgaaAGTAACAATA
CTTGGAACTGGAAATGGAGGCTTTGCCATGGCATTTCATATGTCGAAAAT
GGGACACGAGGTTTTGATCTACCAACGTGAGGAGTCTAAAGAACACCTAC
AAGCTGTGGTAGAGACTGGGAAAATTATTGCCATAGAAGAAGTTGATGGC
CATGCATCCATGTTGCACGGTGAAGTTAACATTGCTAAGACAACCTTCGA
CATCAAAGAAGCTGTTGAGTTTGCGAACAATTTGATGCTGGTTGTTCCAG
CTTTTGGACAAGTACCTATATTCGAGAAAGCGCTGCCCTATCTCACTGCA
AACCATGTCCTAGTTTGCTTACCAGGAAATTTTGCAACATTGGAATTTGT
ACAACgggtgcaaaaaaaatttcccagagCTGATAGTCCTGATAACGACC
ATCTCCATATGACCAAGATTCCTGTTCCTTTTGCTGTTGTTGAAGCCAGT
ACTTTACCGTACACCTGTCGCAAAGTTGgaggaaataaaatttttatcgc
AGGGTCGAAAGATTGTATCAAGTTTGGTGTCTTCCCGAGTACGAGAACCG
ACATTGTTTTGGATAGAATACAACCactttttgaattgaaaatatGGAGA
GCAAAAGATATTCTTGAAGCTGCACTGTCGAACTTGAACATGGTGATACA
CCctggaaatttaatttataatgCTGGCTGGATTGAAGCAACgaagggaa
atttttatttttacaatgtAGGTATGACTGAAGCtattgaaaatatgata
aaggCTATTGATAAAGAACGAAGAGAAGTTTGCAAAGCCTTTGGTTATAA
AGATGAAGATTACCTTCAGATTGCTTGTAGATGGTACACTGACCACAAAG
CCAAAACACTGAGAGAATTTGTGGCCAATCGTGGGCCCTTATATCATGCT
ATCAAAGCACCCAACAGTTTGCGGAACCGATATATCACGGAAGATTTGAA
TTATGTATTAGTGCCTATCATGAGATTTTTAGCCAAGGTAGcaggagtgc
aaactccagtaTCAAATGCGACAATTACGGCAGCCGAAGTACTGTGCGGC
ATCGAATGCGTTCCAGCAAGGAATTTCGACATTCTTTTGAAAGACATTCG
ATCTCTTGAAGACGTCAAACAACGTCTTTGACGTTTTTGTATGCgtcttt
gaaaaaatcaaacttaCACTCCCCCCTAccaatagttatcggacagttgc
gagtacaatatgagaaatattttacgagttccgag Coding sequence (CDS) from alignment at scaffold_242:1078683..1080017 >TCONS_00054475 ID=TCONS_00054475|Name=TCONS_00054475|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_242:1078683..1080017 (Clytia hemisphaerica)
atgaaAGTAACAATACTTGGAACTGGAAATGGAGGCTTTGCCATGGCATT
TCATATGTCGAAAATGGGACACGAGGTTTTGATCTACCAACGTGAGGAGT
CTAAAGAACACCTACAAGCTGTGGTAGAGACTGGGAAAATTATTGCCATA
GAAGAAGTTGATGGCCATGCATCCATGTTGCACGGTGAAGTTAACATTGC
TAAGACAACCTTCGACATCAAAGAAGCTGTTGAGTTTGCGAACAATTTGA
TGCTGGTTGTTCCAGCTTTTGGACAAGTACCTATATTCGAGAAAGCGCTG
CCCTATCTCACTGCAAACCATGTCCTAGTTTGCTTACCAGGAAATTTTGC
AACATTGGAATTTGTACAACgggtgcaaaaaaaatttcccagagCTGATA
GTCCTGATAACGACCATCTCCATATGACCAAGATTCCTGTTCCTTTTGCT
GTTGTTGAAGCCAGTACTTTACCGTACACCTGTCGCAAAGTTGgaggaaa
taaaatttttatcgcAGGGTCGAAAGATTGTATCAAGTTTGGTGTCTTCC
CGAGTACGAGAACCGACATTGTTTTGGATAGAATACAACCactttttgaa
ttgaaaatatGGAGAGCAAAAGATATTCTTGAAGCTGCACTGTCGAACTT
GAACATGGTGATACACCctggaaatttaatttataatgCTGGCTGGATTG
AAGCAACgaagggaaatttttatttttacaatgtAGGTATGACTGAAGCt
attgaaaatatgataaaggCTATTGATAAAGAACGAAGAGAAGTTTGCAA
AGCCTTTGGTTATAAAGATGAAGATTACCTTCAGATTGCTTGTAGATGGT
ACACTGACCACAAAGCCAAAACACTGAGAGAATTTGTGGCCAATCGTGGG
CCCTTATATCATGCTATCAAAGCACCCAACAGTTTGCGGAACCGATATAT
CACGGAAGATTTGAATTATGTATTAGTGCCTATCATGAGATTTTTAGCCA
AGGTAGcaggagtgcaaactccagtaTCAAATGCGACAATTACGGCAGCC
GAAGTACTGTGCGGCATCGAATGCGTTCCAGCAAGGAATTTCGACATTCT
TTTGAAAGACATTCGATCTCTTGAAGACGTCAAACAACGTCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054475-exon-scaffold_242-1491911889:1078683..1080017 | TCONS_00054475-exon-scaffold_242-1491911889:1078683..1080017 | Clytia hemisphaerica | exon |
| TCONS_00054475-exon-scaffold_242-1510915933:1078683..1080017 | TCONS_00054475-exon-scaffold_242-1510915933:1078683..1080017 | Clytia hemisphaerica | exon |
| TCONS_00054475-exon-scaffold_242-1575043694:1078683..1080017 | TCONS_00054475-exon-scaffold_242-1575043694:1078683..1080017 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_242 | supercontig | scaffold_242:1078683..1080017 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0046168 | glycerol-3-phosphate catabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0051287 | NAD binding |
| GO:0016491 | oxidoreductase activity |
| GO:0050662 | coenzyme binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0046168 |
glycerol-3-phosphate catabolic process |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0050662 |
coenzyme binding |
| molecular_function |
GO:0051287 |
NAD binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016616 |
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
Blast
The following BLAST results are available for this feature:
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