TCONS_00054482 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054482
Unique NameTCONS_00054482
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054482 ID=TCONS_00054482|Name=TCONS_00054482|organism=Clytia hemisphaerica|type=transcript|length=810bp
aaaacaagcttaattttagcctttttttaGATAAGACATAATGAGGAatt
aatgaaataaaattaattaaatcGGCAGAAATCGGCTGTATAAAAAAAGT
GTCCCATGGAAAAAACCTCAAACAATCGATTCTATTGTTCAAAAGACGTA
TATTCCTAATGGGGATTTATGTCTTACAAAATATACACTCAAAATCTAAA
TGGTGATGCAATCTCGATGTCTCCCACTGTTTACTGTTACTTATCAATTA
ATTTAGACGATAATGTTACAATTTAAAAGTATTTAAATTTCGAAAGAGGC
TCTCGTCTCCTGTTATGACTAAGTTGTTGACAACTGAGAAAATATTTCAA
GTCAAATACGCATGCAGGTTGATCTAGCGAAAGATTTCGAAATCCCTTTA
TATTCCAATATTGTCAAGAGCTTGTACAAAAAAGCAATAAGGACATGTTT
TAGATCTATTGTCAAACATTGCACAATATTGGTTAGTACAAGAGGGTCGT
ATTAATTGTAACAGACTCAGTATCTCAGTGACAAAGGTGATTAGTAAAAT
AGCACTGGGGGAGTCACTTGAAATGACGTTAAACTTACTAAGATATTGCT
TCATATCAAAATGGTCGAAattctttattagaaactaGAGCATTACTCAA
GTCCtaggcatttttaaagaatTCTGAATTGGGAGACTGAGATATGATTT
AAAGGACTAANTCCCCGTTTTGTTTGATCCCGTGGAGTTCCTGTCTTTTC
CTGTACTTCAGTTCAGGAGCATCAAACTCTTTACGAAGGGATTTTGTTAG
CTCTTTGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_242:1232487..1233296

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054482 ID=TCONS_00054482|Name=TCONS_00054482|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at scaffold_242:1232487..1233296 (Clytia hemisphaerica)
TTACAAAGAGCTAACAAAATCCCTTCGTAAAGAGTTTGATGCTCCTGAAC
TGAAGTACAGGAAAAGACAGGAACTCCACGGGATCAAACAAAACGGGGAN
TTAGTCCTTTAAATCATATCTCAGTCTCCCAATTCAGAattctttaaaaa
tgcctaGGACTTGAGTAATGCTCtagtttctaataaagaatTTCGACCAT
TTTGATATGAAGCAATATCTTAGTAAGTTTAACGTCATTTCAAGTGACTC
CCCCAGTGCTATTTTACTAATCACCTTTGTCACTGAGATACTGAGTCTGT
TACAATTAATACGACCCTCTTGTACTAACCAATATTGTGCAATGTTTGAC
AATAGATCTAAAACATGTCCTTATTGCTTTTTTGTACAAGCTCTTGACAA
TATTGGAATATAAAGGGATTTCGAAATCTTTCGCTAGATCAACCTGCATG
CGTATTTGACTTGAAATATTTTCTCAGTTGTCAACAACTTAGTCATAACA
GGAGACGAGAGCCTCTTTCGAAATTTAAATACTTTTAAATTGTAACATTA
TCGTCTAAATTAATTGATAAGTAACAGTAAACAGTGGGAGACATCGAGAT
TGCATCACCATTTAGATTTTGAGTGTATATTTTGTAAGACATAAATCCCC
ATTAGGAATATACGTCTTTTGAACAATAGAATCGATTGTTTGAGGTTTTT
TCCATGGGACACTTTTTTTATACAGCCGATTTCTGCCgatttaattaatt
ttatttcattaatTCCTCATTATGTCTTATCtaaaaaaaggctaaaatta
agcttgtttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034345XLOC_034345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054482-exon-scaffold_242-1491911889:1232487..1233296TCONS_00054482-exon-scaffold_242-1491911889:1232487..1233296Clytia hemisphaericaexon
TCONS_00054482-exon-scaffold_242-1510915933:1232487..1233296TCONS_00054482-exon-scaffold_242-1510915933:1232487..1233296Clytia hemisphaericaexon
TCONS_00054482-exon-scaffold_242-1575043694:1232487..1233296TCONS_00054482-exon-scaffold_242-1575043694:1232487..1233296Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1232487..1233296 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.413218	0.172694	0.133676	0.130781	2.46251	0.503251	0.986621	1.91838	1.94003	0.601478	3.40897	3.06653	1.76071	1.83287	0.743549	0.855655	0.566201	0.454209	1.50604	1.51029	2.62544	1.83738	1.62442	1.4153	0.316896	1.41411	2.34736	2.41878	2.2932	1.80237
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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