TCONS_00054507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054507
Unique NameTCONS_00054507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2204

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054507 ID=TCONS_00054507|Name=TCONS_00054507|organism=Clytia hemisphaerica|type=transcript|length=2204bp
gggggggtcctaataaggtccgggggggttggaaaattttcgaaaaatta
acaagcgggggggaccgtttatttggcacctaagagtaagacTGTATATT
CCAATTTTCATTATCATTTTGTTTAGAATGAGAGCGCATACGAACTAGGG
AAATTATTGATCGAACTTTATCAATCTATAGACCATGATATAGAAACTGG
TATAGgaaaaattttggaaattattaAGGAAAGTACAGAGGGCTCACCAA
GTCGTGCTGATTTCATCGAGTCTGCTTTGAGTTGGACCACGAAAGATCAC
AAACACGGTCATGTTCGTTTGCATGAAGCAGTCGCACAGAAATACTGGGA
AGAGAAGAACTATTCGAGCGCACGACAACATATCATCCACACCACAAATG
GTAGCTTGTGCGCGTCCTTCCTCATTGAATATCATGTTGTGGTTGGATTC
CCTGGTGAAATCGACCTTTTCGTAACTCAAGCTGTATTACAgtttttatG
CTTGCGAAAGATCTTGATAGCAAACGCCACATTTTCCAATTACACTGCAA
AGCATCCTGGGATTAAACGTCAAAGCCATCCTTTCAACCAGCCTCTGCTT
AACTTTATCGCTTTTTTACTATTGGCTGTTGAAAAAGGGAATATCGAGCA
ATTCAGTTTACTATGCGAAAAATATCAACCCTCGATACACCGTGACCCGA
CCTACAGtgctTATCTGGACAAGATTGGACAGTTATTTTTCGGACTACCG
CCACCACAACGTTCCGGTATGGATGGAATGATTGGTAACCTCATGGAATC
TCTGTTTACCGGGCCTGGGAGTGAGGCTATCACCGAGGGAGAAGATATCG
TCATGGAAACAGAAGATATAGATTGATTGATTAGACTTTGTTGTACAGTC
GGCTAGATCTAATTCGAAACCTAACGGGATACTTATGCTttattcgaata
acagagagattTGATTAATACCCTTCTTGAGATACATCAAAATCAttgcc
agcctcgttttcgaTATAGGACTTTCGACgtcattttacaaattttagtc
acatgttttctcaaaaaactTATGACAAAAGCGTCTCATTCATTTCGAGA
GGATTGCgagaaaagtttaatttttgatatgcaATATCTTCCACCGACCC
AACAAATGATTGGTTGcatacaaccaatcagctgcttggtccgtgatgta
atgccagaagacattgcaatggcgcATAAATCATGAATTTACCATAGCGA
GTAGACTCTCGcttttattcgaatttttctatcATTCGAACTTATTTCCA
GTCCTccaaggagaaaccctcttataatactttctatgattcgaatctct
ctgtaattcgaacaaatacaATTCCCCGTTCGAGGTTGAACTAGGGAGAG
TCCATTGTACTTACTGCATTCAACGGTTGTTGTTCTTTAGTTAGATAGGA
TGGTCAGTGCATTTTCTTTATTCCTTGTAACCTCGTTAGCctacaccagg
gtattctctggcgtccatcagtaacgtaaataaagcctggaatacacgtg
AACGCAATGAAAACGTATAAAAATGTGGTCATCGAAGATAGCAAGAAGAT
TTCGAAACAATCTTGTTCCCAGTGTATTATCCGCTTTCTGCTTACTTCTA
ACCATAAAAAATACCCTGGTATTGTCTGGTTTTGGagcaccagggtattc
tctggcgtccatcatcagtaacgtaaataaggTCTGGAATACACAGTCAC
TATATTTTGATGAATTCCAAGTTCCTTTATACCCTCGTTCTGGTATCGAA
ATTCCTTCTTAATAATAACAGTGTTTTCAATGTGGGGTCTCGGACTTTCG
GATAGCCACCTATACAATATTACAGCCTGTGCACCATTCATAGAAAGAAg
ctatatatatttttcaatccaatatcattataaaaaaatgtgttttttta
ggaaataaaaaaatttgatagttTGTTTTTGACTTGTCCTTTATTGAAAT
GGTCTGGCATTTTACCAATCACACTTTTGCTAAGTTTTGTATTTTTGCGA
GATTGTATTCAGTTAGTATTGTTAATACATAGACTCTTACTAATTTACTC
Acgtttctcacagacccggtaggattttttcagccaggagggggggggca
aaactcgatattcccatgttttttatggctggggattttaaAAGAGAATT
CAAT
Run BLAST on NCBI

transcript from alignment at scaffold_243:1..12201+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054507 ID=TCONS_00054507|Name=TCONS_00054507|organism=Clytia hemisphaerica|type=transcript|length=12201bp|location=Sequence derived from alignment at scaffold_243:1..12201+ (Clytia hemisphaerica)
gggggggtcctaataaggtccgggggggttggaaaattttcgaaaaatta
acaagcgggggggaccgtttatttggcacctaagagtaagacTGTATATT
CCAATTTTCATTATCATTTTGTTTAGAATGAGAGCGCATACGAACTAGGG
AAATTATTGATCGAACTTTATCAATCTATAGACCATGATATAGAAACTGG
TATAGGTAAGTGTATTATCTTTGAGATATTGATTAGAGAAGAAGAAAAGC
AttgattttgaaatcatttgtACACCCTcttttcacagacccactaagac
cccttcccactggaaaaattgttgaagatatactctaatttttgtcccca
ctgaaaataatcagataagaaAAGCCTCACTGCTAAATATTGTGCTATTC
TTTCTAccctcactgaattttctggcttgaaaTGAATGGAACTCAAATCC
CCATCCATTCAAAACAAGGCGTCCCTCgcatgactaaaggttcaatctca
aaataagtgtcttggaAAAATGGAAATCTTGCAATCCTGTTTTGCCTTTG
AGATTGGCTtttttgtcatatgaaaacattgactattcctctaaatgaaa
aaagggcaatctcaatctcaaagatgaacaccacagtaaaactctaaatt
ttgtAAAGtgttaattttgagattgaacctttagtcatgcGAGGGACGAA
GGGAgtatccccatcgagttttttgtccgttttttttACCCCTACTGGCT
GAAATAAATCCTAacgggtctatgagaagggttGGGTGTCTTTGTTAGGT
ACAACATGTTTTGGTTAAAGTATATTTTAgcctttcaatttttaaaatag
tTGGATGGATATTTAAAGGCGAGTTAAGACTGGAATTATCACAACACTTT
CTCgtcaaaagttttgaatgaaatattttaaatgaaGAATTCATTAATCC
TCTATTGCTTTTATTTACaggaaaaattttggaaattattaAGGAAAGTA
CAGAGGGCTCACCAAGTCGTGCTGATTTCATCGAGTCTGCTTTGAGGTAT
GTGAAAGTTCCTTTCCGTATGATAGCCAAATTTTTCCCATCGCCTTTCCT
ATCGCCACTTTTGATCAGCCAGGACGCTGGCTATGTAAAATAATAACTTC
AGTTTGATAGGTCGCAGACTGTTGTCCACGTAGACCCGATATGGCCAGAG
AAAACTGTGGAAAGATCCCGGGAATGTTTTACCTCCTCTATAATTTGTCT
TTTTctggaaagttttttttgttagattttcttGAGATTCAATCAACATG
CTcagggatcgaattagcgtATCGCATTTCGCAATAGCGCTccgttatgc
aaacgtcataattattacttttcaaatttgtccGACATTCAATCCCATAA
TCCCTttcactttgatttcaaaatcgTGAGAGTTGTTACATTTTCTTTGT
TATAAGTGTAATTAATGTGCACAAGAAATTAACGCAATGAACGATGGGAT
TGAAACTCGGGCAAATAAAGAAAgtgatgtctatttttagattcaccaCG
GTGTGCTATTTGCGatgcgtttttggattacttacaagctaaaaattgaa
aataattgatccattttaggatgcaaaatcatgcttatcaaaaaattgcg
atgcactttctaccccttatttcgatgcctgATGTTGTCAACAAAGGTTA
CCTTTGATGGCTAAAATACAGTAGATAATTAGCCTATCCCTATGAAAGGA
AATTTTCTCCTTAAATGAGAATACAGACAGTATTCGCCCCTGGAAGTACA
CGGAATTTTTCAGTGAGTGGTTGTGTCAAGTTGTTTTAATATAATACTTG
CTCTGAGCAACCGATTTGTTTGATTCGAGACTCAAAGTGGTTTTGGGAAA
TATCTTTCCTCTTTTAAAGTACATTTTAAAGTTGATGATATAATGGAGTT
TAGTCGAGGGAAGAACtgtgaaaaatcgatttttttatgaaagagAACTT
TTTGTTGAGATTAAAAGAGAAAGTAGTTTGTAGAGAGGAGCGTGCTTCAA
CACGAAGAATGATGTCGTGGAAGTAAATGAAATACTTGTGTATGCATTAC
AGATTACGCTACCATctgtgtttttataagaatataattGTCATTAAATC
ATATTGAATAGTGCTCAAAAGTCAAACGTACAAGAGATGTATATACTTTA
GAGATGAATATGATGATAGAAATGCTCTGAAAATGAATTGGTTACCAGCG
TTTGAAGTTAAGCTATATTTTTCTACTTAGTTGTTCGTTTTCTGTATAAA
GAATTGCCAAAAATATCTCGTCTCCAGATCTGGTATCGCAACTGCTGCAC
GATGTTGAGATCTATCAAAAATCTGCGGCTTTTTCTTGCTCCTTAACTGA
CTATTGACTCTCTCTGATTCGATCTTCATGGAACCAAATGTGttcttcga
attacagagagcattttaaaccactttccagctgaggggaccaatatatt
tgttcgaattacagaaagattcgaatgataGAAGTTCGAGCTCGAGCGAG
TTGAATAGCAAGAAAAGCCTCGTCCGAGAATTGACGTCATTTGACAATTT
AGGCACTCGCTGTCATGAAAATAAAGAGCTGACGTCAGCTCAATGCACAA
TCTTCAATTTTGTAAGTGACTCAACATGGGACAAattgatgcttataaaa
agtattTAATGAACGCCTAAACTCTAATAAAATACCTTTATTGCATTATA
TTTTATCTGGTACCATGCTGAatatttcgtgattttttttctagttGCGG
CATGTTTTCTCGAATACTACTTTCCCGACCAGTCCCGACAGAAAAGTCAA
CTGCCTTTGCCATATTACTCTAAAGTATAATAAACGTTGAAAAGATACTA
AAACGTTACAAAAGAGAACTTCCATGGcaaagtttctttcaatttttcag
catATTTCTTTATCCTAATCACGGATAGGTCTAACAAAAACTGAGAACAA
AAGTGGGGTCGGGTCGACGGGTCGGCCTATAATGGCGGTATACATTTTAA
GTTTTAgccctaaaaatgtttttgacatGTTCCTATTTTCACACTTTTGT
TAGtacttttgttcattttcttaagaaatcgggtgatCTCGAGTccaaaa
agcctttaaatgttcttccatcaaagccttatatgttcttataaaaaacg
tgtttaactgtttttacatctttcatttcaaattaAGAATTTATTCTCCT
GTTAAACTCTCTACCAAGGAAGGTCAATTCAACTGTGATAATTTTAATTT
GTTTAAAGTGTCCAGGGTTATTAAAAAATGCCTTTTCTCACATATGATAC
AGTATGTATTTGGGATATCAAGTTTCATATAACGTTTTATGTTTACATTA
TGTTTTTCTCTATCTCTCACTCCTTCGCTTGGAAGTGACATTTGTGATTT
TGAAGACAATCTTTTTGTCTGTTATGTTTTCTACATATGTTTTGTGGTTT
AGCATTTATTAGGTTTTTGTTTTCTGTAGATGTTTCTCTAATCAATTCGT
ATAAACTACATAAAACAATGCTCTATTGTTTCTCTAGAGAGATTTTACCC
CTTTTTAGCGAGATAATGAGAAATGACTGATGGCTCCATCggccccggcg
agccattttgagttGGGGGGGGGGCGACGAagaaagtttttcacttttta
caccctcaaaacaccttaaaacgttatctaattggggagaataatagtga
ttatggtttgatttggtctgttAAAAGTTGCTCTAATGTATATAAGTTTT
TATATGGTATTGTCTGCAAAAAAGTAGTGGGGCCATGGCCCATGTGGCTG
ATTTTAGATCGATCGATCGATCGATAAATAgctgaaaattgacaaaattg
tcGATTGCTGACGGAATATCAATAGTCGCGTCTTCTTTACAGAATATATG
GTTTCCCATTGCCAGAGAAATTATTAtgctaaattttgactttgggtCAG
CTTTTGTCCACTTTTTGCTACTGCGCATACCTGTGCGTGCGTAGAAGTCA
GAAAATCAGCAGAATTTGCATAAACATAAACATCCAAACTGGTGGTACTT
CATTATCGGAAAAGTAGCCTATAATTGGTTAGTTagccaaaaaaatgaaa
aatagacgTGACTATTGATATTCCGTCAGCAATGgatatttttgttgatt
tttggctAATTATACTATAAAAAATAGTCTAATTATACCCTATGATAGGC
TTaacagcctatgataggctaaacAATTCGATGGTGTTCTTGACTGATTG
AGAACCGTAACATGTACCAGACTCTTCTTCGCAGGAAAAGAACCGCAATA
ATACGGTTTGTTACGGTTGGGCGCTATCCCGTGTCACAGTTTGTTGCCTC
TGCGGAGAAGCGTATAGCTTTATTGTTATTATGAAAGCTTCCTTATCGAT
GATTTAGCACCAGAAAGTTACTAGAGAAGCATAAGAAATTCTCTAAAAGA
AACCGACCATAAAGAGTAGTTCAACAAAAACTCTGTCCACAGATCccata
tctacggctaatttcaaaattcgttgCCGTAGAGGgcctgttgtcattgt
cttttctcatttgagatttttcaagcCAACCGCTGCAAAGGATTgctggt
gagagaggggagacgatcagagaagtgttgctatttacaaattatacttc
atcgcagaggtctccgtacgggaatattttatcaaacagacaatgcgcac
agagtgtactatgaagcgataaacgtgatatgaactctggtacagagtaa
gcAAAAACTGGCATTGTTTATCCATTGCTTTTGCGAGTTTGTCATTTGGG
GAAAAAAGAAGCTTTTCAAGTGTTTTGTCATTCGATTTCTCGTCACTGGC
AGCTacatcgaaagttaaaagtgacgtcttAAAATCGAATGAAGAAATCG
CAAAATGTAATAAACGTTACTAAGTAGACAAAAATCCATGGCGTCTAGTA
TAGTATAAACAGACCGCATATTTCGgacccccctttcttaaggggggggg
ggggggggcccttcCAAAAAAAAGAGGAGGGGGGggcaaaaattttcata
aaaaggaAGGGATTGCAAGGAAGGGGGATAGTTTAAGAAGTGGGATAGTT
TAAGAAGTGGGGTTTACATATTATATTGTAGAAgtattttcaagcactgt
tatAAAATTTCGTCTCCTTGAAAGGAAGTTCtctgttagagtagtctgag
tcaaaaatAAGTTTATTATAtcgctttctctctctaaagatatttcacat
atatttgtCCAAAATCGTTGGGGGATAGacatttttaaaggttagggATG
CCAAGAAAGGGGTGGGATCAGACCCATTTCTGCACTATGGACCGACACAC
GTCACCGTGGTAGGGCCTGGACAGGCCAAGAACCGAGGGAGTCAATTGGT
TACAGAGTCCTCGTGAATGTCTTTGGTGATCTCTACAGACGGGTTGACGA
AATCATTcaattttgacgtcactttccCGATGACGTCGGTAGCTGTTACA
CGGCAATGAGATATCTGATCTGTGGTTTTTCAAAGTAGTCTCGACAAACG
GTACTTTGTACTATCACTAAATTTAGCTAGCTTTTTAGGTTTCATGATCT
AAAAATAAATTGCTGAATGCAGTAAGTCACTCTACGTGACGTCACTCGCC
TAGAAAACTAACTGTTTGTTCATACATTTTGATTGTGTGAACGCACcaac
tttttttgcttgattttcCACACACCAAGTTATTCTTTATCCAATtgaaa
atactcataaaatcaatgaatagagcttttcataaattacgtcacgaaca
tcacttgcctcgtattcaaacaatttccatagtgattatgtcccttgaga
cattaaatgattttttacgagTAGAaggtagttttaataaaatccgctgg
gagttaatcacaatggcaataatttcaaaacgaggcaagtgatgttcgtg
acgtaatttatggaaaggtatatatttttttcgttCGTATTTTCCAGTTG
GACCACGAAAGATCACAAACACGGTCATGTTCGTTTGCATGAAGCAGTCG
CACAGAAATACTGGGAAGGTTGGTATAAATCAGTcccaaaaccttgaaaa
cctttatattttttgttctgaACTTCAGTTGAACTAGAATCTTAGAATGT
CTGTTTGTATATGTCTTAAATACTTTTCGGCAGctttgagacttcaaaaa
tagttgAGTTTGGCTGAATATAGGACTtattcattttgatattttgattt
ttgtagccTGGGGTTgagccaaaacgaggctaaaatttcGGGGTAGCCTT
AGGGCAAAATCTGCACACTTACACCACTTGCTCCTTATAATTTTATTACA
AAGGGGCTTTGaatgatttgaaaaatacagaagttgagccagtgcggctA
GCATGTTGGGCAGTTGGGCATGTTGGGCAGTTATGTAATGCTTTCTTTTC
TATTCATgttatgcaccattgcaatgtcttccacggacccaacagctgat
tggttgcaagtgacgtattgagtgattttacgtcacttacaaccaatcag
ctgttgggtccgtgatgtaatgctTTCTTTTCTATTCATCTTTAGAGAAG
AACTATTCGAGCGCACGACAACATATCATCCACACCACAAATGGTAGCTT
GTGCGCGTCCTTCCTCATTGAATATCATGTTGTGGTTGGATTCCCTGGTG
AAATCGACCTTTTCGTAACTCAAGCTGTATTACAGTAAGTAGTAGACTTT
ATGTATTTGTGTTTTTACTGCGATGGAGACGATTACCTTCTGATTagtct
actttaatgggataaaatttcgcggggacttgagttccctgatttttcgc
gaaatttcgcggatcaggattagatctaatttttctaaggtgactccaaa
ttttacaaaatcggAGTAGCAAACAGAACttctctcaaaattttgatatt
attgTATGTAAAATTTCGATAATTAACGAAGAGATTTTCTTCAAAGTGGG
GTTTGAGTAGTCTGATTTGCGGGACGAAAAACCGACgatagaaatttgaa
attttcgcggatcgaagaaagatttcaattttttcacgggtacttaattt
tgcggattttcgcgaaatccgcgaaatttaatccccggaAAAGTTTAGCC
CATTAAattgactgactgaggacgacttAGCGAGCACCttactaaaaacc
gggatttttcacctcgtttcttagtgatttcaactttgacgatttttgaa
aaaaagaagcttttcaagtgttttgacgcaaattcgattgttttaatact
gcaggagcttcgaaagttaaaagtggcgtcaaaaaatcgaatgtttagag
cccgaaaacccgggctcaaaacattcgaaaaagtcgcaaagtggaataga
atagatgttaattgcgtagaaaaaagccgtgacgtctagtataggctaag
gACGACTATAAACAAGCACTTTTACCCGATTTCTCGATTTCGCGGTTCAA
AACTGCGGGCTATTCCAAATCGCCTATATAAGTCCTATCGGACTTACTGT
CAACCTATTTGAAATTGTCATTTCGAAGCACTTTATCAGCTGATCTTTCT
CAAAGAAAGCTCATACGAATTGTATTTGTGACTGATTTCACTgatatctc
atttactttttcaggtttttatGCTTGCGAAAGATCTTGATAGCAAACGC
CACATTTTCCAATTACACTGCAAAGCATCCTGGGATTAAACGTCAAAGCC
ATCCTTTCAACCAGCCTCTGCTTAACTTTATCGCTTTTTTACTATTGGCT
GTTGAAAAGTATGTAGcaattactttaggcgtacaaactttcgcgagcag
aaactttcgcgaggacgaaaaatcgcgaaattcacttCATAAACTGTCGc
aaatcaagacgtaaaattgagaattttcacatgaaaaaatggcttagagg
gaaatacttcttggattggcttgaaacatttgtcctttgacttattagtc
atttagcaggctaaaaagtgccttaaaagttacattttattctaagtttg
aagttttatagattttctattttgtcaagaatttttcgcgagcataatct
ttcgcgaatggcccttcctagaatttttaaagacatttactctcgtgaaa
gggccaaaattcgcaaaaattgcgaaagtttctgctcgcgaaagtttgta
cgcctaaagtataccTTTTTATGTGTTTGATATTAGGTGTTGATCACTGA
TTTCTTTTTACTTTACTGGATAGGTGTTCTTTTTTTCCACTGTTTTTTTA
ATGTCGtccattttcattttgtatCTTTTCAGAGGGAATATCGAGCAATT
CAGTTTACTATGCGAAAAATATCAACCCTCGATACACCGTGACCCGACCT
ACAGtgctgtgagtgaacccttttattctttagaaaaatcttTTAGGTAC
AACGATTCAAATTATGGCTTTATATTAAATTAGACAAAATTAGAGTCGTT
GATAATCCGTTTAATACAGTATTAGTGATAGTAGTGGTATGATAAagagc
ctgaacctttcatgtcaaaaaagtcccGAAAACCCTGAAAACACTTTGTC
TGAAACATTTTTTCTAAACCTTTCATGCTTTTTGGgggtgtttttggcaa
aaatcatttCCCAGAAGCACTTTACCTCTCGAGGTGGTGTGTTTTCAGCA
TTTCCTGTGTTCCTGGGATTTCCATAAATCAACTCTCAATTTTCTCCATA
AAATCCAAGTCAAAATGCATTACCTGAAACACCGGCAAGTTTCTGAACCA
TTCAGTGTTTTCTCTGGTGTTCAAGGTGTTTTTCAAGAcgattttgaagc
tcttgcagtgTCCTGTCGGAAACAATAAGATATCGGgttgaaaatcggga
aattttgCCAGTCGGGACTTTTCCCGCttccccctttcttaaggggggga
tgacaccttccaaaaatatgaagaagggggggggggaatcagaaattttc
atcaaaaaggggggatagcaaggaggggggatcgtttaagaagggggatc
gtttaagaagggggggcttacatatattgtagattattttccagcactgt
tatgaaatttagTCTGCGTGAAAAGAAGTTCTTTATATTTGCCAGACCTA
ATTTgtctttactgtttcccttccctttttacactaacccctttccccga
tggtgtccgctaattagaggttccactgtaccATGAAAAATTTACCCCAA
AGCCCTTGgaggataggcatttttaaaggttggggggatgtcaaaaaggg
gggggggggtcagacccctttccgcactatgattCGGTGTTTCTAAAAGC
TTTGAAAACTGAACCATTCGTGTTCAAAAGTGTTTGTTGCAAACCAGGTA
agcaatttgtttttaaagacatgaaaggttcaggctcAGAGGGAGATGTG
GGATTAATTCCTCGAGTTTCATTTTGCAATACtttgaaatactttgaaat
aGTACGAACGAAGTGAGGGCTATCAAACTGTTCCAGAATGATACCCCGCG
GAAGGATAATAGCGTGCAACCTgaataaaatcagtcatatagTTATTGGT
GTTATAATACAATAATCGTAACGAGATAATATCGGTTTGTATATTTGTCC
CTTTTTGCTGATTTCCtgctatgtctgaattagtcgtctctCATGCTAGA
TTATATATTATTGAGATACACAATAAGAACCGGTTAACCGGATTTTACAC
GTATCacagaacacttactaaagattaattatgtgttttcagtaaactta
atcttttagtgagttaaaccatagtgtttgttttaccctcgaaattatta
aatcttattggttgaaaatatgtcacatgactttccgtggcaaagaataG
CACGAACCCAAAAGAGAGGGCCGAAAATATGTCTAAGTTTTAGAAACACT
CCGTATAATGTTTaacatttttctgttttcttgaTGTTTATTCTATATAT
TTTCGGACAGTATCTGGACAAGATTGGACAGTTATTTTTCGGACTACCGC
CACCACAACGTTCCGGTATGGATGGAATGATTGGTAAGTTAATACATCTC
TTTACCAATCTCTTTTGAAGGGGACTGGACCCAACATGCGTAAGTGAGTT
GAGTATTTCAAGTAAGtgagtctgcgaccgcagtcggaggcgacttgaag
gctcctctttcgatagctatctacccgaaggtaggggagggcgtcactct
ttctccctggattgctccacttacccttggttaccctcttaattgctgag
catcaagcagagaggcatcaagtaccattttttaaatattttgtatgaCC
CGGtcgggggttgaacccacaaccttgcgaaccgtagccggatgctctac
cactgcactacggtcgctatcAGTATTTCAAGGGATTGGTACCAAAATCG
TAATGGATCTGGCGATAAAAAAGCTCTTGAACTTctcaataaggctgaga
ataacttggaaatatccaatgaaataaGGGTGGTAGTACTGAAATTGCCA
TTCTCGGCCGAAATTTAAATTCTGAATATTGCTAGAATATCCAAAACTCT
TAGCATAttttgaccttgattgtagagcTAATATCAGGAATAGTGTCTCA
AATGTGTAAGATCTAacattggaaattttgtcaagTGTTGATTAAAGTAA
ACAGTAAAACTTCTCTATTTTCATGCCATAGGTAACCTCATGGAATCTCT
GTTTACCGGGCCTGGGAGTGAGGCTATCACCGAGGGAGAAGATATCGTCA
TGGAAACAGAAGATATAGATTGATTGATTAGACTTTGTTGTACAGTCGGC
TAGATCTAATTCGAAACCTAACGGGATACTTATGCTttattcgaataaca
gagagattTGATTAATACCCTTCTTGAGATACATCAAAATCAttgccagc
ctcgttttcgaTATAGGACTTTCGACgtcattttacaaattttagtcaca
tgttttctcaaaaaactTATGACAAAAGCGTCTCATTCATTTCGAGAGGA
TTGCgagaaaagtttaatttttgatatgcaATATCTTCCACCGACCCAAC
AAATGATTGGTTGcatacaaccaatcagctgcttggtccgtgatgtaatg
ccagaagacattgcaatggcgcATAAATCATGAATTTACCATAGCGAGTA
GACTCTCGcttttattcgaatttttctatcATTCGAACTTATTTCCAGTC
CTccaaggagaaaccctcttataatactttctatgattcgaatctctctg
taattcgaacaaatacaATTCCCCGTTCGAGGTTGAACTAGGGAGAGTCC
ATTGTACTTACTGCATTCAACGGTTGTTGTTCTTTAGTTAGATAGGATGG
TCAGTGCATTTTCTTTATTCCTTGTAACCTCGTTAGCctacaccagggta
ttctctggcgtccatcagtaacgtaaataaagcctggaatacacgtgAAC
GCAATGAAAACGTATAAAAATGTGGTCATCGAAGATAGCAAGAAGATTTC
GAAACAATCTTGTTCCCAGTGTATTATCCGCTTTCTGCTTACTTCTAACC
ATAAAAAATACCCTGGTATTGTCTGGTTTTGGagcaccagggtattctct
ggcgtccatcatcagtaacgtaaataaggTCTGGAATACACAGTCACTAT
ATTTTGATGAATTCCAAGTTCCTTTATACCCTCGTTCTGGTATCGAAATT
CCTTCTTAATAATAACAGTGTTTTCAATGTGGGGTCTCGGACTTTCGGAT
AGCCACCTATACAATATTACAGCCTGTGCACCATTCATAGAAAGAAgcta
tatatatttttcaatccaatatcattataaaaaaatgtgtttttttagga
aataaaaaaatttgatagttTGTTTTTGACTTGTCCTTTATTGAAATGGT
CTGGCATTTTACCAATCACACTTTTGCTAAGTTTTGTATTTTTGCGAGAT
TGTATTCAGTTAGTATTGTTAATACATAGACTCTTACTAATTTACTCAcg
tttctcacagacccggtaggattttttcagccaggagggggggggcaaaa
ctcgatattcccatgttttttatggctggggattttaaAAGAGAATTCAA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034370XLOC_034370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054507-exon-scaffold_243-1491911889:1..205TCONS_00054507-exon-scaffold_243-1491911889:1..205Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1510915933:1..205TCONS_00054507-exon-scaffold_243-1510915933:1..205Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1575043694:1..205TCONS_00054507-exon-scaffold_243-1575043694:1..205Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1491911889:971..1046TCONS_00054507-exon-scaffold_243-1491911889:971..1046Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1510915933:971..1046TCONS_00054507-exon-scaffold_243-1510915933:971..1046Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1575043694:971..1046TCONS_00054507-exon-scaffold_243-1575043694:971..1046Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1491911889:6048..6118TCONS_00054507-exon-scaffold_243-1491911889:6048..6118Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1510915933:6048..6118TCONS_00054507-exon-scaffold_243-1510915933:6048..6118Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1575043694:6048..6118TCONS_00054507-exon-scaffold_243-1575043694:6048..6118Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1491911889:6646..6784TCONS_00054507-exon-scaffold_243-1491911889:6646..6784Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1510915933:6646..6784TCONS_00054507-exon-scaffold_243-1510915933:6646..6784Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1575043694:6646..6784TCONS_00054507-exon-scaffold_243-1575043694:6646..6784Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1491911889:7715..7858TCONS_00054507-exon-scaffold_243-1491911889:7715..7858Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1510915933:7715..7858TCONS_00054507-exon-scaffold_243-1510915933:7715..7858Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1575043694:7715..7858TCONS_00054507-exon-scaffold_243-1575043694:7715..7858Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1491911889:8383..8458TCONS_00054507-exon-scaffold_243-1491911889:8383..8458Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1510915933:8383..8458TCONS_00054507-exon-scaffold_243-1510915933:8383..8458Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1575043694:8383..8458TCONS_00054507-exon-scaffold_243-1575043694:8383..8458Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1491911889:10061..10133TCONS_00054507-exon-scaffold_243-1491911889:10061..10133Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1510915933:10061..10133TCONS_00054507-exon-scaffold_243-1510915933:10061..10133Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1575043694:10061..10133TCONS_00054507-exon-scaffold_243-1575043694:10061..10133Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1491911889:10782..12201TCONS_00054507-exon-scaffold_243-1491911889:10782..12201Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1510915933:10782..12201TCONS_00054507-exon-scaffold_243-1510915933:10782..12201Clytia hemisphaericaexon
TCONS_00054507-exon-scaffold_243-1575043694:10782..12201TCONS_00054507-exon-scaffold_243-1575043694:10782..12201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:1..12201 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.5822	29.9594	30.5762	35.8312	40.5486	33.7922	37.3325	41.8451	24.3312	28.3352	34.0735	21.6839	26.5452	30.1647	28.674	28.491	24.1185	24.541	19.6897	18.396	19.1247	20.883	25.9996	25.7375	30.6376	31.7903	14.1022	14.0884	20.5729	23.1516
Blast
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BLAST of TCONS_00054507 vs. Swiss-Prot (Human)
Match: GET4 (Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.117e-61
Identity = 107/243 (44.03%), Postives = 153/243 (62.96%), Query Frame = 1 
Query:  133 SAYELGKLLIELYQSIDHDIET----GIGKILEIIKESTEGSPSRADFIESALSWTTKDH-KHGHVRLHEAVAQKYWEEKNYSSARQHIIHTTNGSLCASFLIEYHVVVGFPGEIDLFVTQAVLQFLCLRKILIANATFSNYTAKHPGIKRQSHPFNQPLLNFIAFLLLAVEKGNIEQFSLLCEKYQPSIHRDPTYSAYLDKIGQLFFGLPPPQRSGMDGMIGNLMESLFTGPGSEAITEGED 846
            SA +L  L++E  +  + ++       + K+  ++  +   SP R  F+  AL W++    K GH RLH+ +A   W+E+NY  +R H +H+ +G  CA+ L+EY    GF  E+D+FV QAVLQFLCL+    A+  F+ YT KHP I+    PF +PLLNFI FLLLAV+ G +  F++LCE+YQPS+ RDP Y+ YLD+IGQLFFG+PP Q S   G++GNL+ SL    GS    +GE+
Sbjct:   81 SAADLSMLVLESLEKAEVEVADELLENLAKVFSLMDPN---SPERVTFVSRALKWSSGGSGKLGHPRLHQLLALTLWKEQNYCESRYHFLHSADGEGCANMLVEYSTSRGFRSEVDMFVAQAVLQFLCLKNKSSASVVFTTYTQKHPSIE-DGPPFVEPLLNFIWFLLLAVDGGKLTVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQTSSYGGLLGNLLTSLM---GSSEQEDGEE 316
The following BLAST results are available for this feature:
BLAST of TCONS_00054507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GET41.117e-6144.03Golgi to ER traffic protein 4 homolog OS=Homo sapi... [more]
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