TCONS_00054520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054520
Unique NameTCONS_00054520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054520 ID=TCONS_00054520|Name=TCONS_00054520|organism=Clytia hemisphaerica|type=transcript|length=415bp
NGTCAGAGATTGTTGCAGATTTCTTACTGGACCCTCCTACATCCGTAACA
TCTGTACCATACAAAGAAACAGTTTCATGGAGAAAGATATCTTTCGACGT
TCCCTACCCAGATACATGTAACCCGACGAAATTCCTCAAGCAGCAGGAAG
GTCGATACATCTGCGAAGACAGCATCAATTGCAGATATTGTGGTCATGAA
GTTTCACCGCTCATGTGGGAGGAGAAGATTCTGGTTTGCAAAAACTATTC
CTTAGAATGTAAAGtaaCCACTATGACGTGTACAAGCTGTAACGCTTGTC
TTCCGTATGATGGTCTTGACCAAGGAATTTTTAACATGGAAAAATTTCTG
ATCCACCATAATGTTATGCGTGACTATATGCTTCATTTCTTGCATGGAAA
TAGGTAAAAATCTTG
Run BLAST on NCBI

protein sequence of TCONS_00054520-protein

>TCONS_00054520-protein ID=TCONS_00054520-protein|Name=TCONS_00054520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
SEIVADFLLDPPTSVTSVPYKETVSWRKISFDVPYPDTCNPTKFLKQQEG
RYICEDSINCRYCGHEVSPLMWEEKILVCKNYSLECKVTTMTCTSCNACL
PYDGLDQGIFNMEKFLIHHNVMRDYMLHFLHGNR
Run BLAST on NCBI

transcript from alignment at scaffold_243:203115..203816+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054520 ID=TCONS_00054520|Name=TCONS_00054520|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at scaffold_243:203115..203816+ (Clytia hemisphaerica)
NGTCAGAGATTGTTGCAGATTTCTTACTGGACCCTCCTACATCCGTAACA
TCTGTACCATACAAAGAAACAGTTTCATGGAGAAAGATATCTTTCGACGT
TCCCTACCCAGATACATGTAACCCGACGAAATTCCTCAAGCAGCAGGAAG
GTCGATACATCTGCGAAGACAGCATCAATTGCAGATATTGTGGTCATGAA
GTTTCACCGCTCATGTGGGAGGAGAAGATTCTGGTTTGCAAAAACTATTC
CTTAGAATGTAAAGGTAACATTTTAAAATAATGTTTCCGATTTCAAGCTA
ACCATAAAACAGATCAAGTGAAACCTGaaacgtaatttttttaaattttg
atatgtattgtagattttatttttattttttatttcagtaaCCACTATGA
AGTGTACAAGCTGTAACGCTTGTCTTCCGTATGATGGTCTTGACCAAGGA
ATTTTGAACATGGAAAAATTTCTGATCCACCATAATGTTATGCGTGANaa
tttttaaattttgatatgtatcgtaggttttatttttattttttatttca
gtaaCCACTATGACGTGTACAAGCTGTAACGCTTGTCTTCCGTATGATGG
TCTTGACCAAGGAATTTTTAACATGGAAAAATTTCTGATCCACCATAATG
TTATGCGTGACTATATGCTTCATTTCTTGCATGGAAATAGGTAAAAATCT
TG

Coding sequence (CDS) from alignment at scaffold_243:203115..203816+

>TCONS_00054520 ID=TCONS_00054520|Name=TCONS_00054520|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_243:203115..203816+ (Clytia hemisphaerica)
TCAGAGATTGTTGCAGATTTCTTACTGGACCCTCCTACATCCGTAACATC
TGTACCATACAAAGAAACAGTTTCATGGAGAAAGATATCTTTCGACGTTC
CCTACCCAGATACATGTAACCCGACGAAATTCCTCAAGCAGCAGGAAGGT
CGATACATCTGCGAAGACAGCATCAATTGCAGATATTGTGGTCATGAAGT
TTCACCGCTCATGTGGGAGGAGAAGATTCTGGTTTGCAAAAACTATTCCT
TAGAATGTAAAGtaaCCACTATGACGTGTACAAGCTGTAACGCTTGTCTT
CCGTATGATGGTCTTGACCAAGGAATTTTTAACATGGAAAAATTTCTGAT
CCACCATAATGTTATGCGTGACTATATGCTTCATTTCTTGCATGGAAATA
GGTAATCAGAGATTGTTGCAGATTTCTTACTGGACCCTCCTACATCCGTA
ACATCTGTACCATACAAAGAAACAGTTTCATGGAGAAAGATATCTTTCGA
CGTTCCCTACCCAGATACATGTAACCCGACGAAATTCCTCAAGCAGCAGG
AAGGTCGATACATCTGCGAAGACAGCATCAATTGCAGATATTGTGGTCAT
GAAGTTTCACCGCTCATGTGGGAGGAGAAGATTCTGGTTTGCAAAAACTA
TTCCTTAGAATGTAAAGtaaCCACTATGACGTGTACAAGCTGTAACGCTT
GTCTTCCGTATGATGGTCTTGACCAAGGAATTTTTAACATGGAAAAATTT
CTGATCCACCATAATGTTATGCGTGACTATATGCTTCATTTCTTGCATGG
AAATAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034376XLOC_034376Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054520-proteinTCONS_00054520-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054520-exon-scaffold_243-1491911889:203115..203378TCONS_00054520-exon-scaffold_243-1491911889:203115..203378Clytia hemisphaericaexon
TCONS_00054520-exon-scaffold_243-1510915933:203115..203378TCONS_00054520-exon-scaffold_243-1510915933:203115..203378Clytia hemisphaericaexon
TCONS_00054520-exon-scaffold_243-1575043694:203115..203378TCONS_00054520-exon-scaffold_243-1575043694:203115..203378Clytia hemisphaericaexon
TCONS_00054520-exon-scaffold_243-1491911889:203666..203816TCONS_00054520-exon-scaffold_243-1491911889:203666..203816Clytia hemisphaericaexon
TCONS_00054520-exon-scaffold_243-1510915933:203666..203816TCONS_00054520-exon-scaffold_243-1510915933:203666..203816Clytia hemisphaericaexon
TCONS_00054520-exon-scaffold_243-1575043694:203666..203816TCONS_00054520-exon-scaffold_243-1575043694:203666..203816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:203115..203816 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.365258	1.00766	0	0	1.63446	1.56871	0.833707	1.68397	1.25709	1.94756	0.433194	0.295568	2.08405	0.683249	0.978553	0.565261	2.03793	0.703473	0.628991	0.958951	0.545223	0.47103	0	1.05354	1.02968	2.89213	1.41936	0.252026	0	0.779019
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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