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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054523 ID=TCONS_00054523|Name=TCONS_00054523|organism=Clytia hemisphaerica|type=transcript|length=354bp
TTGAAATCCCATCCGAACCACTTGCAAATGAATACAATGACACACAGTTG
AATGAGTTTTTGGAACTGTCTGCAATTaattcataCGAGGCTAGTTTAAC
ATGTCCTGGAACAAATCCAATAAGATACAATGGTGAGATATGGTCTCATC
CTACAGATTTTTGCATATTTTATAAATGCAACAAGGAAGCAAAAGTTGAG
ACTAGTTGGGACTGTTATACGTGCAAAGATGCTAAAACAGGGCAACAACA
TCGTAAGAAATCAAAATGGATCGATTCCCAAGATATTTGTTTGGAAAATG
AATGCACAGGTGGTTTTAGTTCAATCAAGTCTCGCACCATTACTTATGTT
GATC Run BLAST on NCBI protein sequence of TCONS_00054523-protein >TCONS_00054523-protein ID=TCONS_00054523-protein|Name=TCONS_00054523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
EIPSEPLANEYNDTQLNEFLELSAINSYEASLTCPGTNPIRYNGEIWSHP
TDFCIFYKCNKEAKVETSWDCYTCKDAKTGQQHRKKSKWIDSQDICLENE
CTGGFSSIKSRTITYVD Run BLAST on NCBI transcript from alignment at scaffold_243:249016..251519+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054523 ID=TCONS_00054523|Name=TCONS_00054523|organism=Clytia hemisphaerica|type=transcript|length=2504bp|location=Sequence derived from alignment at scaffold_243:249016..251519+ (Clytia hemisphaerica)
TTGAAATCCCATCCGAACCACTTGCAAATGAATACAATGACACACAGTTG
AATGAGTTTTTGGAACTGTCTGCAATTGTAAGTAAAAACGTTCTGATTAA
TAAGACTGGGAAGATAGTCAGGGAAGTCCCTCAATTACGGTATGCTACGA
TTGGGGCAGTTTTCTTTCCTGTTTAGCCTGTAAAGGCTTAACCCTATTAT
CCccaggggggtagaatctaccacacTGGAGTTCTTTCGTgtatatctca
aagaaaaattatttaaacgacttgaaattctgacttttaataaaatctta
ttgagaatacttgtgcaaaattttaaggTCATAGCTTGTCCAGATCagat
tttatgactttattgtgaaacatgacataaaacccagctaaaatcgctta
aaactcaatattttaaagtgctgataacttttgaactatttatccaatca
ttttcaaattttgacacgtgattggcaatataaatttgaaaataataaaa
aaaataattgaaaatgatgacgtcatcatttatgacgtcatcaacttttg
aaaattttactcattttcagcATCAATTTTAAGATAGATTCTTcatggaa
aattaaaaaatggtaattatgttaaagaacagccttttatctttcagaat
cttcaaacagaatctaaatatctttattggttcgactgtgacagacattt
ttgtaaaccatgcattttagctttttttccgacaggtggaaattttgtga
tgacgtcatcgctttttgagtgacgtcatcaatctgtaccaaatttcatg
gacatagctcttctagatcaaaaataaatcaaaaaagcttggggttaATA
GGGTTGACGAATAAGGTGCTGATTAGACAGATAGATTGATCTACTCCGAA
TGCATTCAGGATGGGTCCTAGTTCCGAAAGATTAGGAATCACGGTACTGA
CAGATactgcgacttgacagacgcgagctgccaagAAATGGCCTTTACCA
TGACCATTCGAATGACACTGACAGATAGAAGAACAAAAGATCAACTTGTT
TCGTGACCTTACTGAGAAATatagagaaaatgaaaagatttttgtcTTTG
AACATGAAAAATGGATGATAAACATATCTGAAACATATCTTTGCAAGTCA
TGTTTGATAGTAGATAGCATATAGCATACACGATTTTTAAAaaagcaaac
tatataagaacacaaaatgttgagaacaagtaaaaaacattttgaggagt
ttaaaacacccgatttcttaggaaagggattacaaaatgatgaaaataag
aacatattatgatgttaagaacatttttaagctttaatttcaaagattta
agaacatttgaagatTTCAAATACGTGTATTGAAACAAAACAACGGCATC
TTattcaatttcagaattcataCGAGGCTAGTTTAACATGTCCTGGAACA
AATCCAATAAGATACAATGGTGAGATATGGTCTCATCCTACAGATTTTTG
CATATTTTATAAATGCAACAAGGTAAGTTCAACTATaccaatttattttt
aaatttttgataaactAACTAATGATACTGCCAAAAATTGGCCAAATATT
TGCTGTCTGTCGCCTTACCTTCTTAATCTTAAATTAACTTCATCCAAACT
TACTTCACACTGATGTAAAAGTACACATTTTCTCAATAGGAAGCAAAAGT
TGAGACTAGTTGGGACTGTTATACGTGCAAAGATGCTAAAACAGGGCAAC
AACATCGTAAGAAATCAAAATGGATCGATTCCCAAGATATTTGTTTGGAA
AATGAATGCACAGGTGTAAGTTTTTTTATGTACCGATATGTTGAGACCCA
GACGTCACACAatgtcaaaacaacgtccatgtgacattcataacgtccaa
ataacgttatttgaacgttaaaacaacattgtgtgccagctggggacaTT
TTGTCTGCTTTAAACTAGAACATACATCCCTGGACGGAAATTCTTCCAGT
CTTGACCCCTGAGATTTTCACTCTGAAAGAAAGCATCAACCAGTCATTAG
AAAAAAGTGGCAACCAGTCCCTTTCTATTGATTCCTCCTTCCTATAGTAT
TAATGTTAAGGAGGTGTTACAGACTGTTTCATATTATAGGAATGAGGAAT
ACTCAGCTTACTGCCAACATATACCCTGTTTGATTATTTGTTAAAGGATC
TTACATTTAATTAATACTTGTAAAAGATATATGAACTATTGTTACACACT
TGGATGtcaaagaaaaattcttttgcaggaaacttgttttgtttcaCTGA
TTTTCACAAGTCACGATTTTATGTCAGAGGAGTTGTGACGTGGGCGATAG
ATTCTTACAGCTTGTCTCCACAGTTTAACTTAAGAGAAAGCTAAGTTGTG
GTATTCACGGCATATAAAACACACAtgaactgttttatcaatcacaCTAT
TTTTATCATAGGGTTTTAGTTCAATCAAGTCTCGCACCATTACTTATGTT
GATC Coding sequence (CDS) from alignment at scaffold_243:249016..251519+ >TCONS_00054523 ID=TCONS_00054523|Name=TCONS_00054523|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_243:249016..251519+ (Clytia hemisphaerica)
GAAATCCCATCCGAACCACTTGCAAATGAATACAATGACACACAGTTGAA
TGAGTTTTTGGAACTGTCTGCAATTaattcataCGAGGCTAGTTTAACAT
GTCCTGGAACAAATCCAATAAGATACAATGGTGAGATATGGTCTCATCCT
ACAGATTTTTGCATATTTTATAAATGCAACAAGGAAGCAAAAGTTGAGAC
TAGTTGGGACTGTTATACGTGCAAAGATGCTAAAACAGGGCAACAACATC
GTAAGAAATCAAAATGGATCGATTCCCAAGATATTTGTTTGGAAAATGAA
TGCACAGGTGGTTTTAGTTCAATCAAGTCTCGCACCATTACTTATGTTGA
TGAAATCCCATCCGAACCACTTGCAAATGAATACAATGACACACAGTTGA
ATGAGTTTTTGGAACTGTCTGCAATTaattcataCGAGGCTAGTTTAACA
TGTCCTGGAACAAATCCAATAAGATACAATGGTGAGATATGGTCTCATCC
TACAGATTTTTGCATATTTTATAAATGCAACAAGGAAGCAAAAGTTGAGA
CTAGTTGGGACTGTTATACGTGCAAAGATGCTAAAACAGGGCAACAACAT
CGTAAGAAATCAAAATGGATCGATTCCCAAGATATTTGTTTGGAAAATGA
ATGCACAGGTGGTTTTAGTTCAATCAAGTCTCGCACCATTACTTATGTTG
ATGAAATCCCATCCGAACCACTTGCAAATGAATACAATGACACACAGTTG
AATGAGTTTTTGGAACTGTCTGCAATTaattcataCGAGGCTAGTTTAAC
ATGTCCTGGAACAAATCCAATAAGATACAATGGTGAGATATGGTCTCATC
CTACAGATTTTTGCATATTTTATAAATGCAACAAGGAAGCAAAAGTTGAG
ACTAGTTGGGACTGTTATACGTGCAAAGATGCTAAAACAGGGCAACAACA
TCGTAAGAAATCAAAATGGATCGATTCCCAAGATATTTGTTTGGAAAATG
AATGCACAGGTGGTTTTAGTTCAATCAAGTCTCGCACCATTACTTATGTT
GATGAAATCCCATCCGAACCACTTGCAAATGAATACAATGACACACAGTT
GAATGAGTTTTTGGAACTGTCTGCAATTaattcataCGAGGCTAGTTTAA
CATGTCCTGGAACAAATCCAATAAGATACAATGGTGAGATATGGTCTCAT
CCTACAGATTTTTGCATATTTTATAAATGCAACAAGGAAGCAAAAGTTGA
GACTAGTTGGGACTGTTATACGTGCAAAGATGCTAAAACAGGGCAACAAC
ATCGTAAGAAATCAAAATGGATCGATTCCCAAGATATTTGTTTGGAAAAT
GAATGCACAGGTGGTTTTAGTTCAATCAAGTCTCGCACCATTACTTATGT
TGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054523-exon-scaffold_243-1491911889:249016..249092 | TCONS_00054523-exon-scaffold_243-1491911889:249016..249092 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1510915933:249016..249092 | TCONS_00054523-exon-scaffold_243-1510915933:249016..249092 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1575043694:249016..249092 | TCONS_00054523-exon-scaffold_243-1575043694:249016..249092 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1491911889:250430..250537 | TCONS_00054523-exon-scaffold_243-1491911889:250430..250537 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1510915933:250430..250537 | TCONS_00054523-exon-scaffold_243-1510915933:250430..250537 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1575043694:250430..250537 | TCONS_00054523-exon-scaffold_243-1575043694:250430..250537 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1491911889:250705..250830 | TCONS_00054523-exon-scaffold_243-1491911889:250705..250830 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1510915933:250705..250830 | TCONS_00054523-exon-scaffold_243-1510915933:250705..250830 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1575043694:250705..250830 | TCONS_00054523-exon-scaffold_243-1575043694:250705..250830 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1491911889:251477..251519 | TCONS_00054523-exon-scaffold_243-1491911889:251477..251519 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1510915933:251477..251519 | TCONS_00054523-exon-scaffold_243-1510915933:251477..251519 | Clytia hemisphaerica | exon |
| TCONS_00054523-exon-scaffold_243-1575043694:251477..251519 | TCONS_00054523-exon-scaffold_243-1575043694:251477..251519 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:249016..251519 + |
Blast
The following BLAST results are available for this feature:
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