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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054532 ID=TCONS_00054532|Name=TCONS_00054532|organism=Clytia hemisphaerica|type=transcript|length=359bp
AATTGATATAGCATCTATGGTGATGAGTGAAAATTCGAAATCGCAAAATT
CAACCAGCCCGACAAGCTGTTGAACTCCAGAAACGAACTGATTTCGAAAT
GCTAAAACACACTAAAAGTTCATGCTAAAACAACACGACTCGAAAGTCTG
ACTTCAATTGTTATCAAAAGGAGCCAGTACATTGTTCTTTGTaaattcta
gtttttttttaattttattttcaactgatgatcgtctccacggcgtgaaa
ctattaccttgagattgggtaacttgcatcagtggaggcaaacatgcata
gccctcaaatgaatgacctgtctggtcattaaaatacaactacgcagctc
cattcgcag Run BLAST on NCBI transcript from alignment at scaffold_243:401084..405332+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054532 ID=TCONS_00054532|Name=TCONS_00054532|organism=Clytia hemisphaerica|type=transcript|length=4249bp|location=Sequence derived from alignment at scaffold_243:401084..405332+ (Clytia hemisphaerica)
AATTGATATAGCATCTATGGTGATGAGGTGAAGATCtgaaatttttgctt
cctttaacttgcTTAGCCTTATAAGGCTTAGTACATAGTAGGGGGACCAC
tcacatacacgctttttttttataagaatagtgttctttggttgagggtg
agcattattattatttttctattgttctaaacaataggcctattgtttta
aacccgaaatctcaccctgatattcttatagaagttattcttataataaa
agaaaatagtcgcgcggctgaggtcgaaaaaagtggctagaaaatgattt
tcgtgatacacctcttagattccacttttttcgatggaaactctcgaatt
agtatatgtagattccaaaatcaaaaagtttccatgatattatcgtgcaa
gtaacgagtaaatggcgattttttgcgtttccaggcaaaattgcaaggcc
tggaaattccctgttttccatcagtttttaccacaaataggccaataaat
tttgatctagagaagttgggactttggtgtaatacacttttttgctcagt
ttgaagagctctatcatgtgatataggtctttttttaatttgaagacccc
ccaaaaatcatgaatttccaggccttgcaattttgcctggaaacgcaaaa
aatggccaattactcgttacttgcacgataatatcgtggaaactttttga
ttttgtaatctacacatactaattcgcgagtttccgttgttttttttgga
atctaaaagatgtatcacgaaatgaaacgtttttcgacctcagccgcgcg
actaaaaAGCGTGTATCGATTTTTCCCACACTTAGCGTCATTCCGACGCT
ATAGGGTGGGTGGGTTAGATTGAGTGACGcttaggctgcacacatcccca
gaatttattttgttataggggatgcgtatcgtgtatgaaattctcgtccg
agagttacctcaaatttggggtaaccgaAAGTTGCATAGATTTACATAAT
TTTCTTACATCCAATcacagaaagagaaaaatgacaTCATTGTGTTATTG
CTTtcataattataaattttcattcattaaacaaagaaaaagagaagtCG
TTGTACAGCTGTGACACATaatcaaaaaagagaaaagaaaagacgGTGGT
AAGCTGGGACAGGAATATCTTtgacgatacgcatcccctatatcaaatca
tatcagaggggatgcgtgcagcctaagtGACGCTAAGAAAATCTACTAGA
GATATCGGTTTTTACGAGGCCCAAGAGAtgttcaaatttccagaaaacta
TAACTTTcatatttattattttcaactAGCAGCCTGTTCGTATTCAAGAG
TCAACAAAACATCCTCACACTTCAAATTTGTCTCTTTTTCACTGCATCGA
GAATAAGCCGGTATAATAAaacggcaggtccaaaatgcataaaacataat
gcatattgcataatgcataatgcataatatttgaaaaatgtcaattttag
aggctataataaggagaatttgaaagataatactttcaaaaaaaccagac
aaaacaaatataccaatttctaccagaaaataaagggtacaaagctgtaa
atttgaattttggatgatgaagaaaatccatgatctactgaaaatgcttg
tcaccattttgattttcatagttgtattttacagaacgtaatatcatgta
gaaaaaacacaaaaatatctcCTCCGCATATTACTTTTCtgctaactcga
aaacgtaaattttaaagcaagatctttctgggttttctcagagttttttt
ttcgaacaattgctaataaatttcaacgggtttaccctcttacaaagcat
taaccatgtgaatgctttttgttagataagccaatatccagccaatataa
attaaagagcttcatccggaagctagatcaaagaaaatagacttcaaatc
tttttacattcgaatgtttatgtgttttttttatctgatctgttgcatca
tCTTCTTATTATTCATGCTGACGGGttcgaatattttctctttcgaaaaa
aaatccctctgattggaatgtttacaagaaactcttctaaaggCCCTAAA
GAGGTTTTTCGTGGTTTTAAAGCCTctgcaaaggagagttttagaaaata
taaaatcgttctgtaaattacacaatactattatgcattatgcaatatga
atatgcattatgttttatgcattttgtacctgccgtaTAATAAAATGCCA
GAGACAGAAGACAGTCAGTAAAAGTTTCCTAAATAGGAAATTTTTCTACT
AGAAAGATTTCCTAAATACGAAATTTTCTTTAGATCTCAATTTCCtaatt
aggaaatttttgaGGATGCTTATTGCCTATTTAGGCAATTCTTAGAGACT
TTTGGCTATATATATCTCAAGCAATACGAGGcagtttttttgctcacaag
gctaatttcttcaaaattttgcaaGGATTACAAATATCTAGACAAAATCA
GTCGGAAATTAGCCAATCAGctcgtttttacaaaaatctacaaaatttcc
tatataggaaatatttcagaggtcaaatttccaaaataggCAATTTTCAA
CCTCACATTTCGCATAGAATTTTCTATTTAGGAAATAATTTCCTAATCAG
GAAACTTTTACTGACTGGTAGATGTTTAAATAGTTTGGGGCTTTTTTCCC
TGCGTCATATAACCCAggcgtccgcgctcgataggatcgatcatcggaac
ggctcaaTGACGGATCGacagaggatcgatactcaagattttttaagctt
atgattagttatcgatctatcatcgatctatcatcgatctatcatcaatc
ttatcgaccctatcgactctatcgagtatatcgattcgtcatcgatcgtt
aatcgattcgtcatcgatcgttaatcgattcgtcatcgatcgttaatcga
ttcgtcagcGATCGTTAATCAATTCGTcatcgatgcataatcgatttata
tTCGATGcagaatcgattaacgatcgatgacgaattgattaacgatcgat
gacgaatcgattaacgatcgatgacggatcgattaacgatcgatgacaaa
tcgatatactcgattgaaatactagctcgataatggatcaacgaaggatc
gatactcaagactttttaatggctaaatcttccatcgatctcctatccag
atcgataagtaatccatcgatcacatatcgatccgtcatcgagccgttct
gatgatcgatcctatcgagcgcggacgccTGGTATAACTTATGAGGGTCT
GGgaaggttggcaaacgatatcatactccaggatgcaagtgaaattttcc
aatccgcggacctagacgggggttcggttattatcagttagggttagggt
tggagctcgagagtcacaatataaggccgaaggccttaTTAGGGGCATTC
ATACCTTGAGATTTAACTTTGGATCCCGTAGGGGGCACcagtagggttgg
gagctttcttaattatggtctgtaaattacacgctataagtatttgggAA
TGACAGCCTTCTGCGGTGTCTCGTTGATGcaagcggttaggcattggggt
tgtaaaccaaggttgcttaaATTTGGTGGTTTGAGCCGGGGTCAGAGACC
TGTGTTTCATCGGtatgggcaaatttcagaaaaatacttagaaaacagtt
agaaacacttgagaaagacagaaaatcaggatagaagataggaaagtaga
aaatagggagAAAATAAAagacgatgcatcctggagtatggatatcgttt
gccaactgTCATCTTTTGTTACATTTTACAATAAATTATGGGTATATAAT
GAGTAAGTCCagctttgaaagttttaaatttataAATTCATTTTTATATA
TGTTCACTATGTCTCAGTGAAAATTCGAAATCGCAAAATTCAACCAGCCC
GACAAGCTGTTGAACTCCAGAAACGAACTGATTTCGAAATGCTAAAACAC
ACTAAAAGTTCATGCTAAAACAACACGACTCGAAAGTCTGACTTCAATTG
TTATCAAAAGGAGCCAGTACATTGTTCTTTGTaaattctagttttttttt
aattttattttcaactgatgatcgtctccacggcgtgaaactattacctt
gagattgggtaacttgcatcagtggaggcaaacatgcatagccctcaaat
gaatgacctgtctggtcattaaaatacaactacgcagctccattcgcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054532-exon-scaffold_243-1491911889:401084..401110 | TCONS_00054532-exon-scaffold_243-1491911889:401084..401110 | Clytia hemisphaerica | exon |
| TCONS_00054532-exon-scaffold_243-1510915933:401084..401110 | TCONS_00054532-exon-scaffold_243-1510915933:401084..401110 | Clytia hemisphaerica | exon |
| TCONS_00054532-exon-scaffold_243-1575043694:401084..401110 | TCONS_00054532-exon-scaffold_243-1575043694:401084..401110 | Clytia hemisphaerica | exon |
| TCONS_00054532-exon-scaffold_243-1491911889:405001..405332 | TCONS_00054532-exon-scaffold_243-1491911889:405001..405332 | Clytia hemisphaerica | exon |
| TCONS_00054532-exon-scaffold_243-1510915933:405001..405332 | TCONS_00054532-exon-scaffold_243-1510915933:405001..405332 | Clytia hemisphaerica | exon |
| TCONS_00054532-exon-scaffold_243-1575043694:405001..405332 | TCONS_00054532-exon-scaffold_243-1575043694:405001..405332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:401084..405332 + |
Blast
The following BLAST results are available for this feature:
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