TCONS_00054537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054537
Unique NameTCONS_00054537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054537 ID=TCONS_00054537|Name=TCONS_00054537|organism=Clytia hemisphaerica|type=transcript|length=246bp
GCCAGTCATTCTTTGCAGCTGCCATAGATATGAACAATCCTGTGTAAGTT
GTAAATGAAATCAGCATGACATAAAAATCTCTCATCTTCAAACAATGAAC
AAACACGAGATTGATGAACAGCGAGCCAAGAAATTTCAACAGCAGAGTTC
CACCAAGAAAGTATCCAATTTGTGTTGGAAGGAATTGAAATGGTGTGTGC
AACAAATAAAGTATTGTTGCACTGTTCAAAGTCATGAAATCTGGac
Run BLAST on NCBI

transcript from alignment at scaffold_243:451698..452000+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054537 ID=TCONS_00054537|Name=TCONS_00054537|organism=Clytia hemisphaerica|type=transcript|length=303bp|location=Sequence derived from alignment at scaffold_243:451698..452000+ (Clytia hemisphaerica)
GCCAGTCATTCTTTGCAGCTGCCATAGATATGAACAATCCTGTGTAAGTT
GTAAATGAAATCAGCATGACATAAAAATCTCTCATCTTCAAACAATGAAC
AAACACANTAAATGAAATCAGCATGACATAAAAATCTCTCATCTTCAAAC
AATGAACAAACACGAGATTGATGAACAGCGAGCCAAGAAATTTCAACAGC
AGAGTTCCACCAAGAAAGTATCCAATTTGTGTTGGAAGGAATTGAAATGG
TGTGTGCAACAAATAAAGTATTGTTGCACTGTTCAAAGTCATGAAATCTG
Gac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034384XLOC_034384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054537-exon-scaffold_243-1491911889:451698..451767TCONS_00054537-exon-scaffold_243-1491911889:451698..451767Clytia hemisphaericaexon
TCONS_00054537-exon-scaffold_243-1510915933:451698..451767TCONS_00054537-exon-scaffold_243-1510915933:451698..451767Clytia hemisphaericaexon
TCONS_00054537-exon-scaffold_243-1575043694:451698..451767TCONS_00054537-exon-scaffold_243-1575043694:451698..451767Clytia hemisphaericaexon
TCONS_00054537-exon-scaffold_243-1491911889:451825..452000TCONS_00054537-exon-scaffold_243-1491911889:451825..452000Clytia hemisphaericaexon
TCONS_00054537-exon-scaffold_243-1510915933:451825..452000TCONS_00054537-exon-scaffold_243-1510915933:451825..452000Clytia hemisphaericaexon
TCONS_00054537-exon-scaffold_243-1575043694:451825..452000TCONS_00054537-exon-scaffold_243-1575043694:451825..452000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:451698..452000 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.08255	3.63913	1.08008	0	0	0	3.83135	1.99814	0	1.35522	5.32609	0	1.13343	0.587728	2.61898	2.47487	3.00672	0.662244	4.89371	0	0	0	0	0	0	3.76305	1.13364	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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