TCONS_00054563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054563
Unique NameTCONS_00054563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054563 ID=TCONS_00054563|Name=TCONS_00054563|organism=Clytia hemisphaerica|type=transcript|length=1462bp
tAAAATTGAGCCTCTGAGTACTTACCACCATGCTACTGCCTCTAAATATG
TAGTTTCAATTTACTAATGTACGTTCCACTGTTCATCAGTTGTTTCCTTT
TTTACGTGCTCCAGAAAGAAAGAGAATTAGAAGAACTCACAGAGCGTATC
GGCCAACTAACAACGAATGATGGTCAAAATCGTTCAATAGTGGTTAATCG
AATGtatcaagaaaaaataaaatgtctcGATCAAGAAATTGCTAAAAAGA
ATGAGATTTTGAAGGAGATCAAATCACACATCAGAGGTTGTGCTGAACGA
GAAGCTCAATTGTTGAGAGATATTGATGAACTCAAAGAAAAGgttgaatt
tttgcaaaattttccgAATGGGGTTGAGAATGAAAATGACGCTCTTGCAG
CTTTACAACAAAGCAGACTTCGTGTGCGGACATTAGAATGTGAAAAAGAG
GAACTGGTGAACGAGCTGAAACGTCTTCGAGAGCTGACCAATGACGGTGA
AGAAAAAATAGacgtgACTCAAGATGAAATCATCaagaagttgaaaaatt
atgataaaatgtTAGCTTTGGAAGTTGACTTGAGGACTCGCATCAAGTCA
ATGGAAATTGAAAAGGAGAGACTTTCTAAAGAGAATAACAAGcTGAAAAA
GGAATTGGATTCGTTCGACCCAGCATTCTTCGACGAGCTAGAGGATCTCA
AATACAATTATCAGAAATCTCTTACAAAGAACTCGCTCTTGGAAAAGCAA
TTGATTGATTTGTCAGAGCAACTTGGTATTGATGTCAACATTCCACCCTA
ATTATCAACATATGTATTAACCCTGATGGGAACGTCACCTTACCTGCGCA
CTGGATGGAACTTTAGTAAGTGCACGAATATTATATTGTTGATTATAAAC
ACCGATTCTTTCACCCTCGAATACACTTACGGGAACAATATGGAAACATG
CATCTCCACTGATACAAGCCTTTTTATAGGATTCGTCTCCTTTTCAGggc
aagattttttgaaatttctcaaatattacctcggtattttctcaaatttt
acaccgttacagtgcactttttcccacttgctcacaaatcaacccttaca
gtgcactttccaaagtccaaaaaacctacccttaagggttGCCCCCCCCC
CCCGGGCCTTTATGTAAAGTTTAGAGGTCATAAAAATGCAAATTCTTTTC
GATTTGGGTATTTCCAAAACTGATATTGATAATGTTTTTTAAAAACTTGT
AATATAGATGTATGAAAAAAGATTTTACTAAAAAATGTGATATATTTATG
GAAAATTTTGAAAGATTTTTAAAATTTAGAAGAAATATTGAAATTTGAAA
AGCATATGGCGGCTGACAGCCCACAACATATTTTATCCTTTATTTTCTCG
TACGAAATTATATCTTGTGTATTTAAAATTTGGTGTCTAATTAAATAAGG
AGGAGACTGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_243:647981..661983+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054563 ID=TCONS_00054563|Name=TCONS_00054563|organism=Clytia hemisphaerica|type=transcript|length=14003bp|location=Sequence derived from alignment at scaffold_243:647981..661983+ (Clytia hemisphaerica)
tAAAATTGAGCCTCTGAGTACTTACCACCATGCTACTGCCTCTAAATATG
TAGTTTCAATTTACTAATGTACGTTCCACTGTTCATCAGTTGTTTCCTTT
TTTACGTGCTCCAGAAAGAAAGAGAATTAGAAGAACTCACAGAGCGTATC
GGCCAACTAACAACGAATGATGGTCAAAATCGTTCAATAGTGGTTAATCG
AATGtatcaagaaaaaataaaatgtctcGATCAAGAAATTGCTAAAAAGG
TTTGTTGTCTGTGATAAACAAAATGTAGCGCATGTGTAGTACCATCTTGA
tgggggagtttctaaacatcgaccagaaatggcgaccagataaatttggg
ttatcgagtttatctgctctctccaccgtagagaaagtcctcagaatact
aaaaagtgacctttgaagtaaccagtcattttcttgataaattgacacga
tttgacaaaatattgacagggccaTTAAGTATGATGTCTCTAAGTTTTGT
TACACCGAATATTTTAATCATGCTGAATGGGATGCCTtcagtatgaatag
atagaacttgtcagtaggaaaaaattgggaaggccagttttagagatatc
aatctAATCAAtcattctattgtctttatgctgacaaaatgactatCTGA
TGAttaaatacaaagcttctcaaaccaatttcaaaaaatgttatgccgct
aattattttgatgctgataatacaaaaggatagaaattgacaccataatc
gagctccaagagcgtcgaaatggttgttttaTGCATAGGGAATGTGGCTC
TAAATAGAtcagacaggggtgagcttactcttcaatatgATATATTCAAA
TGATAAGGAGAGACAATCTACGTTGGTGAACAAGAAAaaactcgataatc
caaatttatctggtcgctgtaTTTTCAGTATACactattttttattagaa
caactttataagaacaatgaggttCACAAATGCCAAAAAAATTAGAGCAT
TAAGAACAAAAGCCTATCCAAAACTTAAGGTATAGAGCCTCGCATTAAAA
TCCTACGGTATGAATTTTCGTGTTTGGATTTTGTACTTTGTATATTGTCA
AATATAAAGGGAGGGCAAACTGGGATCTAAAACTGACACTTCTGTATCAG
TGAACCAGTGAGTTCGGCCACGGTGGGTAACCcagtgaaaaaaattataa
aaatggcCTAATTTTAAGCCCCGTTGGGATGATGAGTTAACCCGGTCAAA
TTTTATCGAAATTCCCTACCCCTGTCAAAACTTGGAAATTCATTGTCTTA
CCAGGTCTCACTCACTCCGGTCAAAATTCGTATTATATTATTTATATTAT
TTCTTTCTGGAATTCTTATACCTGTCATGAAAAATATGGAATTTGAAGGA
GATAATCGCTGAATAAAAGTTCAGTAAACTTTCTGGAAATAGGAAACTTT
CATCTTGACATTTTGAAACTCCCAAATATTTGTGCTCGCTCCGCTTGGAA
CTAAATCTTTAAATTACGTTCATTCTGATAATTCTCATTTCGTTGTATTC
GTCAACATGACCTTTAAATAACTGTTaaggaaaaactgaaaactttcCTA
ATGGATGAAAATGTCTGGAAGATATTGGGTATTTCGCAAGAATGtctgga
aaattttttaatattttcaggtcaaaaatctggaaaaatgTGCCTTTTGA
GATAAAAAGTTTGGGATTTTCAACTTGGCAAACGCGTAGGAATCCTGAAT
AAGGTCAACGcggtcaaataaaaaaaaaaattaataaatctaGTAAAGCC
AATGCTTtcaattgacaattttttctctTCGCCGGTGAAAATCGAGTTAA
AAATTCTCACTCAGTTCGTTTTTGAGATCTCAAATTCAAACCCggttaag
tttatttttttacaaagccAACCCGGTGGATTTCAAAACATCACTGGGTC
ACTGACACAGCAGTGTAAACTGGTGATTACAATGAGaatattctttttat
ttctcattttcttcctcctctttctcttttttggtttcgaattttgcaat
aaaagtaAAGCAGATTAGTCATTTTACAACTTATATAACCTGCAAGTATC
ATTTAACTTTTGTACCTACCTAAATCGAGCAAGGCTCTTTAGAGAATGAG
GGAAgaatgaaaaatgagaaaatatacTAGGTAAATGAAAATATCCTCCA
CACCCCcgccccctagtagatactttctgaccattCCCTTCGAAACCGAG
TGGGATAAAGACGTTGAATAATAACCTTATTAGATTGCTACTAAGTAGGA
TAAGACTTACTCTATTGTAATCTCGCCCAACAAAAGTCGACCTTCTTTAA
TAGTAGTTTTCCCTCCCCTTGCCTTTGCTTGAAGGGAAAGAAATGAATCA
AGAAAAGCTTTTCTTTCTTtagatttctttttcgaaacaATTATAACTGT
TTCACTAGCAAATACCTTTTCAACGAGCAAAAAATCGTAATCTAATTCAA
ATGCCACGAAATATATCTATTATAAAATTTAGTGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAGTCAAGAATGACCAAGAAAATACACCAAA
GATCACTGACAAGAAAAAGGTTTGAGTTTTATAAACTAGAGTCTGTCTCA
CGACCCCTCCTCCGTacaaaaatatgaataaatCTAAGCCCTCTCTTTTC
AACGTCTTCCGGATAATATGACGCCACAATATTTATTACATTTGTAATCA
ATAAGCTTTGTCACATCATAAGCAATATATCAAGTGCAtggcgtcctcca
gctttttggtccccCTAATAAgagctaaaatcccccatctggccttcccc
ccccccacctgtctttaaaattcgtgctcccccaattgggaaatccccct
agccgtattgtataagggttgcgaagtgatgatccagacttgcctcaatt
cgcaagctactagggcaaaaaaaaagactctcaagatccctagaaagaca
ggctcataagcctgaatgcccaaacacatcaggaaggtctgtatttatcc
tattactccccccactgggtagaggactgaatataccccctattcgcctt
tctccccccatcaagcttgaaaatttcacttcccCCCTGCCACCAAAATC
TGATcccccccccatcttcctgggggggggatgatcccatgtTTTCTCCC
TCCATCCCTGTTACCGATACGACAACTTTATCATGTTAGTTAGTTTATCG
AGTTAGAATCTGTGaatgtgtctgtctgtctgttctGTGaatgtgtctgt
ctgtctgtttaTTCATCCATGTCGacttaaaaaatggtcaaatttggCTG
AACTTTGAACTTTGTTTACTGGTAGATTATCATGAAGTGTTTAATTCTTA
ATTTccaagtttttgattttttaaatgctAAAATTGAGCCTCTGAGTACT
TACCACCATGCTACTGCCTCTAAATATGTAGTTTCAATTTACTAATGTAC
GTTCCACTGTTCATCAGTTGTTTCCTTTTTTACGTGCTCCAGAAAGAAAG
AGAATTAGAAGAACTCACAGAGCGTATCGGCCAACTAACAACGAATGATG
GTCAAAATCGTTCAATAGTGGTTAATCGAATGtatcaagaaaaaataaaa
tgtctcGATCAAGAAATTGCTAAAAAGGTTTGTTGTCTGTGATAAACAAA
ATGTAGCGCATGTGTAGTACCATCTTGAtgggggagtttctaaacatcga
ccagaaatggcgaccagataaatttgggttatcgagtttatctgctctct
ccaccgtagagaaagtcctcagaatactaaaaagtgacctttgaagtaac
cagtcattttcttgataaattgacacgatttgacaaaatattgacagggc
caTTAAGTATGATGTCTCTAAGTTTTGTTACACCGAATATTTTAATCATG
CTGAATGGGATGCCTtcagtatgaatagatagaacttgtcagtaggaaaa
aattgggaaggccagttttagagatatcaatctAATCAAtcattctattg
tctttatgctgacaaaatgactatCTGATGAttaaatacaaagcttctca
aaccaatttcaaaaaatgttatgccgctaattattttgatgctgataata
caaaaggatagaaattgacaccataatcgagctccaagagcgtcgaaatg
gttgttttaTGCATAGGGAATGTGGCTCTAAATAGAtcagacaggggtga
gcttactcttcaatatgATATATTCAAATGATAAGGAGAGACAATCTACG
TTGGTGAACAAGAAAaaactcgataatccaaatttatctggtcgctgtaT
TTTCAGTATACactattttttattagaacaactttataagaacaatgagg
ttCACAAATGCCAAAAAAATTAGAGCATTAAGAACAAAAGCCTATCCAAA
ACTTAAGGTATAGAGCCTCGCATTAAAATCCTACGGTATGAATTTTCGTG
TTTGGATTTTGTACTTTGTATATTGTCAAATATAAAGGGAGGGCAAACTG
GGATCTAAAACTGACACTTCTGTATCAGTGAACCAGTGAGTTCGGCCACG
GTGGGTAACCcagtgaaaaaaattataaaaatggcCTAATTTTAAGCCCC
GTTGGGATGATGAGTTAACCCGGTCAAATTTTATCGAAATTCCCTACCCC
TGTCAAAACTTGGAAATTCATTGTCTTACCAGGTCTCACTCACTCCGGTC
AAAATTCGTATTATATTATTTATATTATTTCTTTCTGGAATTCTTATACC
TGTCATGAAAAATATGGAATTTGAAGGAGATAATCGCTGAATAAAAGTTC
AGTAAACTTTCTGGAAATAGGAAACTTTCATCTTGACATTTTGAAACTCC
CAAATATTTGTGCTCGCTCCGCTTGGAACTAAATCTTTAAATTACGTTCA
TTCTGATAATTCTCATTTCGTTGTATTCGTCAACATGACCTTTAAATAAC
TGTTaaggaaaaactgaaaactttcCTAATGGATGAAAATGTCTGGAAGA
TATTGGGTATTTCGCAAGAATGtctggaaaattttttaatattttcaggt
caaaaatctggaaaaatgTGCCTTTTGAGATAAAAAGTTTGGGATTTTCA
ACTTGGCAAACGCGTAGGAATCCTGAATAAGGTCAACGcggtcaaataaa
aaaaaaaattaataaatctaGTAAAGCCAATGCTTtcaattgacaatttt
ttctctTCGCCGGTGAAAATCGAGTTAAAAATTCTCACTCAGTTCGTTTT
TGAGATCTCAAATTCAAACCCggttaagtttatttttttacaaagccAAC
CCGGTGGATTTCAAAACATCACTGGGTCACTGACACAGCAGTGTAAACTG
GTGATTACAATGAGaatattctttttatttctcattttcttcctcctctt
tctcttttttggtttcgaattttgcaataaaagtaAAGCAGATTAGTCAT
TTTACAACTTATATAACCTGCAAGTATCATTTAACTTTTGTACCTACCTA
AATCGAGCAAGGCTCTTTAGAGAATGAGGGAAgaatgaaaaatgagaaaa
tatacTAGGTAAATGAAAATATCCTCCACACCCCcgccccctagtagata
ctttctgaccattCCCTTCGAAACCGAGTGGGATAAAGACGTTGAATAAT
AACCTTATTAGATTGCTACTAAGTAGGATAAGACTTACTCTATTGTAATC
TCGCCCAACAAAAGTCGACCTTCTTTAATAGTAGTTTTCCCTCCCCTTGC
CTTTGCTTGAAGGGAAAGAAATGAATCAAGAAAAGCTTTTCTTTCTTtag
atttctttttcgaaacaATTATAACTGTTTCACTAGCAAATACCTTTTCA
ACGAGCAAAAAATCGTAATCTAATTCAAATGCCACGAAATATATCTATTA
TAAAATTTAGTGGTTGGTcgaaatattttagattttgtaaTGTTTGCcgt
aatttttctaatttaactgaaCTTAGCGAAATTAGCTAATCAAACTTCTA
CACGTGCATGTGTACTGTCAGCGCATCCTTGTTCAACGAGGTCAACAACC
CATTAATTTTAACAAGGCTTATGTCATCCTTTTTCCGAAAATATTGATCC
TCGTATAGATTAGATTATTTATGTCCAAACTTTAACTtcgacttagaatt
tttttcggTAGATAAACATCAAGACAGACTTGGCCCAATTATACTCTTCT
TTCTTTAAGAATGAGATTTTGAAGGAGATCAAATCACACATCAGAGGTTG
TGCTGAACGAGAAGCTCAATTGTTGAGAGATATTGATGAACTCAAAGAAA
AGGTGAGAACATTTCTGTTAAAGCTTCCAAAAACAAAACCTACCCTATTT
AGCTAAGGCTACACTTATAAGGTTGCGTGAAAAATTCACCAATGTAACCA
GGCGGTAAATGCCACTTTCAACCAAGCATTTGTATAGAACTTCGTGTGCA
ACTTATTTAAGAAATAATTTACTTCAAATCACTAAATAAGAGATTCGGCT
GTATCTCTTTTGTTGTTTCTTAATCTTGAGAAAAGTGTTTATTTACTTAC
GTACTTACCTAATGTAGTTCTTTAACTAGGGGGTAATTGATTTCATAAGT
AGTGATAGTTGCACAATTGACAATAGGTGTCTACAAACCATACTCAACAC
TCTCACGAGTATTTCAAGCTGAGTTTCTTACTTTATCTACCTACATTCAC
AATGACATACTTGTCTGAACAGATGGGTGTTGTCAGTACTAAATTCTCAG
ACATCTTGACGTTTGGTGACGTGGAAAAAAACTCTGAAATCTTTGCATTA
CCTTGGGGTATCCAAACGAAATGGGTATCCAGGACGACAAATTTGAGAAA
CCTTTTAGTACATTGGTACTAAATtaatgtttttcataatttctgaataa
ttttcagaatttgtccAGTTATTTTTGCATTAGAGAACTAAGACTTCGTG
AAAACGAAcacaaaattaaaagtttttggttCGTCTTTAAGCACTCTTTT
TAACTGTAATTTCACCTTCATGCACATTTAAAGATATCTATTGAATCGTA
GgttgaatttttgcaaaattttccgAATGGGGTTGAGAATGAAAATGACG
CTCTTGCAGCTTTACAACAAAGCAGGTATGTTGTCTCTTAGACCACGTTC
ACACGTAACGGTTCTGTTTCACTCCGAAACAAAATCAAgctattctattg
gttaaagTCGAGGTTTACGTCATTTCTAATCAGTAGAATGGCTCCATTTC
ATTTCGAAGCAGAACAGAACCGCTACGTGCGAACATAGTCTTAATTCTAC
TCAAAATGCATTAAGGGTATCGACGTGAAGGCAATAAAtatgttgaaaaa
aattttacgaccatgaaaaaaaagagatttcTGGCACCAAATTTCTGCTT
AATCATTTTCTTCgcattttccaagaaaagttTCTTATGCTTTGACAATT
AAAGGAATAACATTAAAGTCTATAATTCTTTTCTTTCGTATACAGACTTC
GTGTGCGGACATTAGAATGTGAAAAAGAGGAACTGGTGAACGAGCTGAAA
CGTCTTCGAGAGCTGACCAATGACGGTGAAGAAAAAATAGacgtggtaaa
atttcaaaatgctcATTAAGggataatacacctttcccgaatttatttcg
actttttgaaaaacgCTATTCCGAAACCCTACTCTACTTGCATTTAATTT
AGAAAGATTCTACTACGAAAtgcaaaatcagcaaaaagaaGAATTATGTT
AAAAGCTCTCCCggttcttgaaatatttcaattttaagcTTCAAAAGTAT
ATAGTTCTCGTTTCAATTTGGAGAGCTCGaattcgcgtggataaattttg
gcgatCTTCAATATTTTCGACCATAACGCGGGCTTTTTTGTTCTGATTAT
TTgattttaacactgcaatgtttttgcAAGCTCAGTATTTATTTCATAGC
GATTCAGACCTCCATTTAAATGGTAACAATAACCTAAATGACAAACAATA
CAAATGAGATAACAAAATGTCCCTATCTCTTCCTTAGACTCAAGATGAAA
TCATCaagaagttgaaaaattatgataaaatgtTAGCTTTGGAAGTTGAC
TTGAGGTATTATTATATTATGATaattaccagtggataccccttaaaacc
acataccccttaaaacctacaaagttaCACTTTGGGCTCTCTTAGCCACC
ATACTTAatttaatattgtataattcacttttttacaacctcttataaat
gtaatataaattaatataaattattttataatataaatttcataaaaaac
ttatATATAtacttaaaaagttatacaatttttttcatcaaaaatccCTT
TAACAATCCAAGTTTTTcggacctagagattacacaattgaatttaaggt
cataaaacctttaggtacctatacttatggtatgaaaaaatcattttctt
cttcatggtTAGACCCCAAAGAAATCGTTAGTCCCTCAAATTTGCATAGC
TTTCCTAGGGTATGTAGATATCGTAGATTTATTAATTTAAATGTTATTTT
TAAGGACTCGCATCAAGTCAATGGAAATTGAAAAGGAGAGACTTTCTAAA
GAGAATAACAAGGTATGATTTTGATTAAATAAACTCTAAGTAGGCCGAAA
ATTGAGGGACAATATTCACGCAAATGCAATAAAGATTGATccaaattaat
ttgattctaCGGTTCCCGGGATAAAAATGAGGATAGCTTTTTCCATCTTC
AGTCGTGAGTTTTTCCCTCGCGATGGTACCTAGAACTAATAAACTGAGGT
AGttatactacctgtggttttgtagatgTCTGCTATTCAGACTAATGGTA
ACCGCAAAAACTCTGTTAAAACTCTTGCTTTGGTACAAAAAATAAGGGAA
AAATTGGACACGaggcgaaaattaaaaaaatgtagtgtttccggaatgcg
ggtgaaggaaaaaagctctcatgcggccggccggaaaattttttttttgt
tatttttgataacttttgatcattgaaatagaactttaaagataactttt
atgtacaaacagtatgaagtaagccctgaatactagtgtatcaactacta
acgaacaaaacttgatttacaagcgggaatatctaactaaacgacgtttg
ataccttgaacggtcaacttgattttccttatgatgaaccatatagatga
acccatagtctgcgacCGGGtcagaaagtttttctttttcacccgGCTGG
TTTCTGGAAACactgcatttttttattttcgcccaagaaataatgttttt
attatGACTAAGATgttgttttgttattttgttattttcccATTTAGAAA
ATAGAGACTTACCACCTCTGCAATGTGTAAATGTGTTTCATTTTCTATCA
ACTATTAGCACTTTTTCATGTTTAAGTCCCAAACATGAAAGTTGTTGTTT
TGGATCAGTGCATATATTTTATAGGCATCAACTAATATTTCGAGCTTCGA
Gatatttgttgactttttagtctaaagtgaaagaaaaatacagcaaaatc
aataaatattttaccatttttcaattAGCCATTTCTACTCTGGGATTGTA
TTGAGCACTCAATTTCACTTAGTCTTAGAGTTATCCAGGGAATTCGGGTT
AAACTATAACAAAATGTCacaacacgttttttataagaacatccaaaatt
ttttaaaccttcggatgttcttaactttttgggtttcaagccgcctaaaa
atgttcttattttcaccatttttacctactttcctgagaaattggctgtt
ttagagtccacaaaagCTTAAACATTATATTAACAATTGATTGATTAGAT
CGGTCAAAGTGAATGTAAAGACACAGAGTCACTTAAAGTCCTCCATCAAA
CGTAGATCCTAAatatttgcttaaaatttgtttttgttttttggacctac
ctctgGGGTCCTTTCCcggtcctttaaattaatctTTGTTCGCTCGTCGG
TTCGGCCGTTCTGTTACCggctttctgttttttttctttttttgcatagt
gatgcaaaatgaaAGTACCAAAAAAGTGACGGGgctcgattttcaaaaaa
agaattttggcaaattttggcTTAATGCATACAATATTTTAACCTGtgta
cagtggaacctctaattagcgtaCACCATCGGGggagaagtgtccgcctt
ttagaaacttttgatttcggagctccaattttgaaattaggccatcccag
ggtgtcgaaaatacaaaattggggtctaaagtacttatctgcagacacta
ggNNAGAATAATATCTCACTTTGGCTACTTCATCATCTATTCAGATtccc
tttgttaaaagtgattattggtcgtaaaaacagtttctcaaaatctgatg
cGTGGATAGATTGCTCTTTATAAGGGTATTTTTTCTCAGTtatgaaattt
ttagttttggaaaacgattgatatttacaaatctattttagcttacaatc
tggaattttaggagctgaaatttagtgattccatcgattttaactcctaa
aattaaaaaatcaattttactcTATACGGAAAGaataactactgtaattt
aggtgaaaacttgacacccaaatttcttttcttagaagtgcgttttcaaa
tagttttcaacactggtgaatctataaaatgagctgatttcaaatatgta
attCTTATTTGCATTGAGGGGACCGAAGTGCCCGAAAttttcagttgaaa
ataatcaaattatgtgcataattttttgagaattcaaaagaatccaatca
atatgagaaaatatgcaattaaaatacgataagaacaaagaaacgacatt
atcattgcacacgtgcaattgaattcccattgcaactaagggacccctta
cagacacgcttcattttgagaaaaaaagcaTGAATTCATTCTATCTGATA
ATAGTTCTATGCTAGGTcatagaagaacaagagaaaggttattaaaacgc
aacaatttagtttttaacaaatgaaagaaaatctagaaatataacaccaa
aattgaaaatacaatttgttgaatgggtcaagggaaaactggaaatttgt
agaaataatttgaatgataagactaataagtgcttgaaataaaaatatct
aaaaaaattttcttcgattttggacgtctgtgcccgtttgatattcaata
tccgctaattggagagctgaAATAGGGGTTTTTACCATTTCGTGCGAAAG
AATTTGTCCgttaatcagagggtccgctaattgagtgtccgccttttaga
aactattttatgaggatttgactaggaagcggccggggaaaatgaaattg
tccgctaatcagaggtgtccgccgtttagagtgtccgttaattagaggtt
tgaCTGTAtcagaaaatattttctaatgATTATTATCTCATGATTGGGAA
GCGtttttaacttgaaattttgatccTTGATAGTTTAGATTAAACTTTTA
TCGTTTTGATTCAGTAACCTACTATATTGGATATCGCGAAAGTCAGTCAC
CTATCTTGAGCGACTTTTTCTTGATAAAAAAGTACACGCTTATTTACGAG
AATACAAATATTCATCATGGATTTAGCCGAAAAGTTATGAATATGCTAAG
ACCCCAGCAATTCTCAAATCATTCACAAAAAATGCCTTTCTACATGTTGA
ATTTAGGTCGAATTTGGACCGTAACCTAAAAATTCATTAACAATATTAAg
ataaattttcgaaaaaagttaagaatatccccAGATTGTATGGAGAAAAA
CGTGAAAATCGGCATGTGTATGCATTCTGGTATTTTATATGCTTATGTTC
TTATTCATCTCTTCTTTCACTCCTATCGAAGTTAATCAACCGTCATGGTG
AATTCTTAAAACTCTCTATCAATTACAGAAAaagaattttggattttcta
aaactttGGCCCAAATcttgatatatatttttttctcttattatTCTTAC
TACAAGGGTAGCTTGTATTTTCTTCAGTAGACTAATAAACTGTCCTAGTT
TTCATAATTTCGATTGAATTCAACTTcgtgtggatttaatttcgcgtgga
tttaatttcgcgagccAGCAAATTCACAGGATTTCGTGAGCTTTATTTTC
AAACgtaaaaaattaacgaaaacGTGAAATGGAATATCACAAAGATTAAT
CCGattaaaaatctgatttttttctctttcaagcTGAAAAAGGAATTGGA
TTCGTTCGACCCAGCATTCTTCGACGAGCTAGAGGATCTCAAATACAATT
ATCAGAAATCTCTTACAAAGAACTCGCTCTTGGAAAAGCAATTGATTGAT
TTGTCAGAGCAACTTGGTATTGATGTCAACATTCCACCCTAATTATCAAC
ATATGTATTAACCCTGATGGGAACGTCACCTTACCTGCGCACTGGATGGA
ACTTTAGTAAGTGCACGAATATTATATTGTTGATTATAAACACCGATTCT
TTCACCCTCGAATACACTTACGGGAACAATATGGAAACATGCATCTCCAC
TGATACAAGCCTTTTTATAGGATTCGTCTCCTTTTCAGggcaagattttt
tgaaatttctcaaatattacctcggtattttctcaaattttacaccgtta
cagtgcactttttcccacttgctcacaaatcaacccttacagtgcacttt
ccaaagtccaaaaaacctacccttaagggttGCCCCCCCCCCCCGGGCCT
TTATGTAAAGTTTAGAGGTCATAAAAATGCAAATTCTTTTCGATTTGGGT
ATTTCCAAAACTGATATTGATAATGTTTTTTAAAAACTTGTAATATAGAT
GTATGAAAAAAGATTTTACTAAAAAATGTGATATATTTATGGAAAATTTT
GAAAGATTTTTAAAATTTAGAAGAAATATTGAAATTTGAAAAGCATATGG
CGGCTGACAGCCCACAACATATTTTATCCTTTATTTTCTCGTACGAAATT
ATATCTTGTGTATTTAAAATTTGGTGTCTAATTAAATAAGGAGGAGACTG
AAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034390XLOC_034390Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054563-exon-scaffold_243-1491911889:647981..648229TCONS_00054563-exon-scaffold_243-1491911889:647981..648229Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1510915933:647981..648229TCONS_00054563-exon-scaffold_243-1510915933:647981..648229Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1575043694:647981..648229TCONS_00054563-exon-scaffold_243-1575043694:647981..648229Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1491911889:655140..655232TCONS_00054563-exon-scaffold_243-1491911889:655140..655232Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1510915933:655140..655232TCONS_00054563-exon-scaffold_243-1510915933:655140..655232Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1575043694:655140..655232TCONS_00054563-exon-scaffold_243-1575043694:655140..655232Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1491911889:655982..656055TCONS_00054563-exon-scaffold_243-1491911889:655982..656055Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1510915933:655982..656055TCONS_00054563-exon-scaffold_243-1510915933:655982..656055Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1575043694:655982..656055TCONS_00054563-exon-scaffold_243-1575043694:655982..656055Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1491911889:656426..656525TCONS_00054563-exon-scaffold_243-1491911889:656426..656525Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1510915933:656426..656525TCONS_00054563-exon-scaffold_243-1510915933:656426..656525Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1575043694:656426..656525TCONS_00054563-exon-scaffold_243-1575043694:656426..656525Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1491911889:656968..657035TCONS_00054563-exon-scaffold_243-1491911889:656968..657035Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1510915933:656968..657035TCONS_00054563-exon-scaffold_243-1510915933:656968..657035Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1575043694:656968..657035TCONS_00054563-exon-scaffold_243-1575043694:656968..657035Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1491911889:657485..657542TCONS_00054563-exon-scaffold_243-1491911889:657485..657542Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1510915933:657485..657542TCONS_00054563-exon-scaffold_243-1510915933:657485..657542Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1575043694:657485..657542TCONS_00054563-exon-scaffold_243-1575043694:657485..657542Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1491911889:661164..661983TCONS_00054563-exon-scaffold_243-1491911889:661164..661983Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1510915933:661164..661983TCONS_00054563-exon-scaffold_243-1510915933:661164..661983Clytia hemisphaericaexon
TCONS_00054563-exon-scaffold_243-1575043694:661164..661983TCONS_00054563-exon-scaffold_243-1575043694:661164..661983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:647981..661983 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.33066	4.71027e-09	2.63792	1.8648	6.15476	5.63763	2.28061	7.9908	0	3.70293	1.79719	2.36281	2.35953	4.63217	4.97818	6.22625	5.07491	5.45996	1.0291e-08	1.81654e-09	3.43019	6.80276e-09	7.04125	3.69824	17.9764	14.5759	2.43235	6.76813e-09	1.96888	2.00598
Blast
[Close]
BLAST of TCONS_00054563 vs. Swiss-Prot (Human)
Match: CE290 (Centrosomal protein of 290 kDa OS=Homo sapiens GN=CEP290 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.257e-24
Identity = 82/218 (37.61%), Postives = 139/218 (63.76%), Query Frame = 1 
Query:  145 RIGQLTTNDGQN-RSIVVNRMYQEKIKCLDQEIAKKNEILKEIKSHIRGCAEREAQLLRDIDELKEKVEFLQNFPNGVENENDALAALQQSRLRVRTLECEKEELVNELKRLRELTNDGEEKIDVTQDEIIKKLKNYDKMLALEVDLRTRIKSMEIXXXXXXXXXXXXXXXXDSFDPAFFDELEDLKYNYQKSLTKNSLLEKQLIDLSEQLGIDVNIP 795
            R  QL   D ++ +SIVV RMY+ K+K L+ +IAKKN+ + ++K  ++   ERE ++ +  ++L+++++ L++ P G E E      LQ  RL    L+ EK EL+++++  ++    G E      D++ +K+K          DL T++K  ++EK+ L +E  KLKKEL++FDP+FF+E+EDLKYNY++ + KN LLE+++  LSEQLG+++  P
Sbjct: 2254 RGPQLEGADSKSWKSIVVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQIKILKHVPEGAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKD--QSGAESTIPDADQLKEKIK----------DLETQLKMSDLEKQHLKEEIKKLKKELENFDPSFFEEIEDLKYNYKEEVKKNILLEEKVKKLSEQLGVELTSP 2459
The following BLAST results are available for this feature:
BLAST of TCONS_00054563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CE2901.257e-2437.61Centrosomal protein of 290 kDa OS=Homo sapiens GN=... [more]
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