TCONS_00054565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054565
Unique NameTCONS_00054565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054565 ID=TCONS_00054565|Name=TCONS_00054565|organism=Clytia hemisphaerica|type=transcript|length=411bp
ACTTTGTTCTCAATTTAGATGACTATATAAAAAGTCATGCAATCTTCATT
TATTAAACTTTGACTGGAAACAGTGCAATTGACTACAATAAAGAGGATGT
TGCGATTAATCACTCTCTTGGGACTGCTCATTATTGTAGCATATGCATCC
GGCTCCTGTCGTGATAAATTGCCACGCAATGGTTGCAGAGGTTGGGTATG
GGATACAAGAAACTATTGCAACTCAAAACAATTTGTCAAAGATAACTGTG
CAAGATCGTGTCGTCTCTGTCCAAGTCCGTGTCAAGACTATGGAAGAATT
TGTATGAAAACATACCAACACAATTGCTCCAAAGCCTGGTTTAAAAGTCG
ATGCCCTAAATTATGTAAAGCTAATTGCACTAATTTGTAACTCAAGAAAT
AAAGTgttgat
Run BLAST on NCBI

transcript from alignment at scaffold_243:667389..667963+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054565 ID=TCONS_00054565|Name=TCONS_00054565|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at scaffold_243:667389..667963+ (Clytia hemisphaerica)
ACTTTGTTCTCAATTTAGATGACTATATAAAAAGTCATGCAATCTTCATT
TATTAAACTTTGACTGGAAACAGTGCAATTGACTACAATAAAGAGGATGT
TGCGATTAATCACTCTCTTGGGACTGCTCATTATTGTAGCATGTAAGTTT
CAACATTCTTATGAAAGTGTCTTGTCCTCCAAATTTCTACAAAATTACGA
ATTTTTTCCTCGAACTTACTTTGAAAGGCAACAGGCTTTAACAGGCATAT
TACTTGAGAGAAAAACCGCTACAGTAAGAATTAAAGTGAACTCCACTCAT
TTTTAGATGCATCCGGCTCCTGTCGTGATAAATTGCCACGCAATGGTTGC
AGAGGTTGGGTATGGGATACAAGAAACTATTGCAACTCAAAACAATTTGT
CAAAGATAACTGTGCAAGATCGTGTCGTCTCTGTCCAAGTCCGTGTCAAG
ACTATGGAAGAATTTGTATGAAAACATACCAACACAATTGCTCCAAAGCC
TGGTTTAAAAGTCGATGCCCTAAATTATGTAAAGCTAATTGCACTAATTT
GTAACTCAAGAAATAAAGTgttgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034391XLOC_034391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054565-exon-scaffold_243-1491911889:667389..667530TCONS_00054565-exon-scaffold_243-1491911889:667389..667530Clytia hemisphaericaexon
TCONS_00054565-exon-scaffold_243-1510915933:667389..667530TCONS_00054565-exon-scaffold_243-1510915933:667389..667530Clytia hemisphaericaexon
TCONS_00054565-exon-scaffold_243-1575043694:667389..667530TCONS_00054565-exon-scaffold_243-1575043694:667389..667530Clytia hemisphaericaexon
TCONS_00054565-exon-scaffold_243-1491911889:667695..667963TCONS_00054565-exon-scaffold_243-1491911889:667695..667963Clytia hemisphaericaexon
TCONS_00054565-exon-scaffold_243-1510915933:667695..667963TCONS_00054565-exon-scaffold_243-1510915933:667695..667963Clytia hemisphaericaexon
TCONS_00054565-exon-scaffold_243-1575043694:667695..667963TCONS_00054565-exon-scaffold_243-1575043694:667695..667963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:667389..667963 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05379	1.54142	2.38632	2.33464	0.23685	1.31013	0	0.634183	0.444006	1.28327	0.889696	0.23394	121.714	98.379	216.214	521.428	3.55986	6.08123	199.583	143.01	2.03774	3.97575	1.81239	2.74621	35.4509	29.283	0.722481	0.257017	0.194938	0.397222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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