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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054580 ID=TCONS_00054580|Name=TCONS_00054580|organism=Clytia hemisphaerica|type=transcript|length=518bp
AATCAAGCaagaacaagcaaaaaaattccagAGATAGATCGAAGATCATA
CAAGCCACTGGAATGCGTGCTGCAATAACGCCAACAGGAACAAATATTAA
CAGTAACAAATATCAACAGGAACAGTCTATATAAAACAATCGTGATTGGT
TCTGTCGGACACAGCATCCACATCAACACAACATAAATATCACAGGATCT
GTCTTCCACAGCATCCACACGTATCTGTCAAACAGGATCCGTTATTCACA
GCATCCAAACACTTGACCAAAACAATCACCTAGATCATCCACTTGATCAG
CAATAACGGCGATTCCATTTATTAACTTTATCTCTTTATTAGTATTTCAT
TAGTGTctattaaatttttgaaaacaaattttttgagaTTGTTTTCAGCC
TTTTGGAACAATTTCATGCAAGTCACCCTGTGATTGGATAGTAAAATTTA
ACACTTAATAatttatctgccattatgaagatgttcagaaatttttacaa
tcggaattcctctgggag Run BLAST on NCBI transcript from alignment at scaffold_243:860143..861255+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054580 ID=TCONS_00054580|Name=TCONS_00054580|organism=Clytia hemisphaerica|type=transcript|length=1113bp|location=Sequence derived from alignment at scaffold_243:860143..861255+ (Clytia hemisphaerica)
AATCAAGCaagaacaagcaaaaaaattccagGTGATTATCTTTAATggga
atttttttggattttgctcaaaatttgtcCTGTACGCGGCATGGTTTAGC
AATATATGTAGTTTTTTTTAAACGTTCAATGTGCCTTTTCTGACATATTA
GCATGCCCTGCTATGCATTTTTCTGTCAGCATACTATTAAGAATTAATTc
agaaacaaaattttatctCATATTTTCAATTTGTGAAGGCCTATGCGCCT
TTATTGCAGCAGTCCTATTTTTTGTCCCGTACGCGACAACTCCAATTACA
CTGCTTCAAATatcaataagaaaaaaaattctgcctaaaatttttttttt
ctttcaggttACTACCTATGTATGTGTCATACTTTTCAGACAATTTTatc
tgaaaagaaataattttttttaatttgcgcTGAGACGCTTCATCATgcta
aaaaaaaatcacacttgTTCCGTGCGTGACAGTGAAATACTCAAAATCAG
taataattaaaaacaaaaattaaaaacaggaAAACAGCTTGTAAAGTCTG
ATGAAACTAATTTTTTAGGATACAAATGTTGAATAGTAAATAATTGACTC
ACCAGATATCAGCATTCTTCTCCAAGAGATAGATCGAAGATCATACAAGC
CACTGGAATGCGTGCTGCAATAACGCCAACAGGAACAAATATTAACAGTA
ACAAATATCAACAGGAACAGTCTATATAAAACAATCGTGATTGGTTCTGT
CGGACACAGCATCCACATCAACACAACATAAATATCACAGGATCTGTCTT
CCACAGCATCCACACGTATCTGTCAAACAGGATCCGTTATTCACAGCATC
CAAACACTTGACCAAAACAATCACCTAGATCATCCACTTGATCAGCAATA
ACGGCGATTCCATTTATTAACTTTATCTCTTTATTAGTATTTCATTAGTG
TctattaaatttttgaaaacaaattttttgagaTTGTTTTCAGCCTTTTG
GAACAATTTCATGCAAGTCACCCTGTGATTGGATAGTAAAATTTAACACT
TAATAatttatctgccattatgaagatgttcagaaatttttacaatcgga
attcctctgggag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054580-exon-scaffold_243-1491911889:860143..860173 | TCONS_00054580-exon-scaffold_243-1491911889:860143..860173 | Clytia hemisphaerica | exon |
| TCONS_00054580-exon-scaffold_243-1510915933:860143..860173 | TCONS_00054580-exon-scaffold_243-1510915933:860143..860173 | Clytia hemisphaerica | exon |
| TCONS_00054580-exon-scaffold_243-1575043694:860143..860173 | TCONS_00054580-exon-scaffold_243-1575043694:860143..860173 | Clytia hemisphaerica | exon |
| TCONS_00054580-exon-scaffold_243-1491911889:860769..861255 | TCONS_00054580-exon-scaffold_243-1491911889:860769..861255 | Clytia hemisphaerica | exon |
| TCONS_00054580-exon-scaffold_243-1510915933:860769..861255 | TCONS_00054580-exon-scaffold_243-1510915933:860769..861255 | Clytia hemisphaerica | exon |
| TCONS_00054580-exon-scaffold_243-1575043694:860769..861255 | TCONS_00054580-exon-scaffold_243-1575043694:860769..861255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:860143..861255 + |
Blast
The following BLAST results are available for this feature:
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