TCONS_00054592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054592
Unique NameTCONS_00054592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1088

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054592 ID=TCONS_00054592|Name=TCONS_00054592|organism=Clytia hemisphaerica|type=transcript|length=1088bp
GACGCACAATCGCGCGTGGACGACCATCTACAAGGGAAACAACACGTTGG
GTATGCCAAAATCAAATCCACACTTGACGAAATGAAGAACCGGTCATGGG
AGAGACGTGGAAGagaaaaatcagagaaaagcGACCGCGATCGGGATGAA
CGGGACTCGGAACGTTCAAAGCGGAGAGAAAGATCTGGCGAACGAAAGAG
CAGTCGGAGAAGTCGATCAAAGAGTCGGGATCGCCGACGTGATAAGAGCC
GTGAACGTAGAAGAAGTCGGGATAAGCGTGACGAACGTCGTTCAAGACAC
GGCAGTCGTGATCGGGATCGGGATAGAAGTCGTCGGGATTCGAGAAGAAG
TAGTCGTCGTAGTCGTAGTCGAAGTAAGGATCGTAGGCGAAGAAGTAGAA
GTCGGGAACGAAGCAAGGATCGTCGCTCAAGACACGGTAGTCGGGACCGC
GATCGCCGTGAACGAAAATCGTCAAAAGAAAAGGAACGTCGTACGGAAGA
TAAAATGGACAAAGGGACAGCGATGGTCGATTCGACGGAACAAAACGGGA
CGGAAGAAAGACGGTTAAATGAAGGGGAGGAAAAACAAGTTTCGGCANTT
CCGGACCAGGGTTTTATAAGGATTACAGTATGTTAGGTTCGGTTCAAAAT
TACAACAATTTGGATATCTTTGATTGTTTTCCATAGTTTTTCTGTTTCTC
TGTCTTTTGGTNAAAGGTATAAATTCTACTGAAAGCATAGATAAGAAAGA
CCAGACGAACGAAGAAGCTATCGACTCAAACACCATCATGGAATACTGAG
ATGTGCACAAACATTCTGAAGGTAGGTTGTATTAATGTTTATCGCAACag
acaaatcaaaacaatttggaAAGTCAGTGAATTGGTCATAATTATAACAG
ACAAAATGTCTGAAGAGAGAGTATCAAAATTGGTAATTCTTTCCCTATTT
GGATAAAAAAGGATGAACTTCTGCATGATGGTataagtattttttcaaac
gaGATTTTTAAAGAGTTTCGTGCCCCCTAAGCGGACCTTGAAATCAcaca
attattttttgaaattcacgCAAGGTTTTCCAGTTCAT
Run BLAST on NCBI

transcript from alignment at scaffold_243:52471..54061-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054592 ID=TCONS_00054592|Name=TCONS_00054592|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_243:52471..54061- (Clytia hemisphaerica)
GACGCACAATCGCGCGTGGACGACCATCTACAAGGGAAACAACACGTTGG
GTATGCCAAAATCAAATCCACACTTGACGAAATGAAGGTAATTACCCAGC
TGGCACAAGACGTTGTTTCAACGTTCATCTAACGTTATATGGACGTTGTG
AACGCTAGATAGACGTCGAAAAAACGTTATGTGCCAACTAGGTAACCAAT
CAAACCAATTATTCAAATATAACATACACCTACCCCTGTCGTGGAGATTT
TCGAAGGTCCTTAAAAGGGGCAAATAATTTTCGGAGGGTGGGGGCAATTT
ACACAAGGAATATCTTGCATTTAAAAGCCATGGCAAAATCATTCCCCAAT
CTCTGTAGGGGTATCCATATAGAATGTACAAACAGAAGGAAAAGATTTCT
ATTGTTCTCTGATAACAAGGGGAGAGTTGTCAAATATTCGGAAAATTTTT
GCCTTCATACTACGGTATATGGACGACCCCTGGGAATGCTTAGAGCTCTT
TTTTAGAAGAAAAAGCACTGATGCTGTTCTCGAGATGGATAGTTGAATGT
TTCAGCTTAATAAATCCTTTCTTCTCGCACACATCTTTAGAACCGGTCAT
GGGAGAGACGTGGAAGAGAAAAATCAGAGAAAAGCGACCGCGATCGGGAT
GAACGGGACTCGGAACGTTCAAAGCGGAGAGAAAGATCTGGCGAACGAAA
GAGCAGTCGGAGAAGTCGATCAAAGAGTCGGGATCGCCGACGTGATAAGA
GCCGTGAACGTAGAAGAAGTCGGGATAAGCGTGACGAACGTCGTTCAAGA
CACGGCAGTCGTGATCGGGATCGGGATAGAAGTCGTCGGGATTCGAGAAG
AAGTAGTCGTCGTAGTCGTAGTCGAAGTAAGGATCGTAGGCGAAGAAGTA
GAAGTCGGGAACGAAGCAAGGATCGTCGCTCAAGACACGGTAGTCGGGAC
CGCGATCGCCGTGAACGAAAATCGTCAAAAGAAAAGGAACGTCGTACGGA
AGATAAAATGGACAAAGGGACAGCGATGGTCGATTCGACGGAACAAAACG
GGACGGAAGAAAGACGGTTAAATGAAGGGGAGGAAAAACAAGTTTCGGCA
NTTCCGGACCAGGGTTTTATAAGGATTACAGTATGTTAGGTTCGGTTCAA
AATTACAACAATTTGGATATCTTTGATTGTTTTCCATAGTTTTTCTGTTT
CTCTGTCTTTTGGTNAAAGGTATAAATTCTACTGAAAGCATAGATAAGAA
AGACCAGACGAACGAAGAAGCTATCGACTCAAACACCATCATGGAATACT
GAGATGTGCACAAACATTCTGAAGGTAGGTTGTATTAATGTTTATCGCAA
CAGACAAATCAAAACAATTTGGAAAGTCAGTGAATTGGTCATAATTATAA
CAGACAAAATGTCTGAAGAGAGAGTATCAAAATTGGTAATTCTTTCCCTA
TTTGGATAAAAAAGGATGAACTTCTGCATGATGGTATAAGTATTTTTTCA
AACGAGATTTTTAAAGAGTTTCGTGCCCCCTAAGCGGACCTTGAAATCAC
ACAATTATTTTTTGAAATTCACGCAAGGTTTTCCAGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034405XLOC_034405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054592-exon-scaffold_243-1575043694:53975..54061TCONS_00054592-exon-scaffold_243-1575043694:53975..54061Clytia hemisphaericaexon
TCONS_00054592-exon-scaffold_243-1575043694:52471..53471TCONS_00054592-exon-scaffold_243-1575043694:52471..53471Clytia hemisphaericaexon
TCONS_00054592-exon-scaffold_243-1510915933:53975..54061TCONS_00054592-exon-scaffold_243-1510915933:53975..54061Clytia hemisphaericaexon
TCONS_00054592-exon-scaffold_243-1510915933:52471..53471TCONS_00054592-exon-scaffold_243-1510915933:52471..53471Clytia hemisphaericaexon
TCONS_00054592-exon-scaffold_243-1491911889:53975..54061TCONS_00054592-exon-scaffold_243-1491911889:53975..54061Clytia hemisphaericaexon
TCONS_00054592-exon-scaffold_243-1491911889:52471..53471TCONS_00054592-exon-scaffold_243-1491911889:52471..53471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:52471..54061 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.176067	0	0	0	0	0.213854	0	0	0	0	0	0	0	0	0	0	0	0.362429	0.610994	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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