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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054603 ID=TCONS_00054603|Name=TCONS_00054603|organism=Clytia hemisphaerica|type=transcript|length=593bp
TTCGGCTGGTTTTTTTTTAGAACTTGTTCTAGAATATTCTATCATGAAAC
ATTATAAAAAAAGCTAGTTGGAACGTATTTGCTTGAGTACTTTGCAATAA
GAGAGGTGCAGAGATTTTCAAGTTTAGATTTGGTTTCATAAAATATTGAG
GTTTTGGTAAGTTATTATCTAAAAGTTACAAGGAGCACAAAGATGTCGAC
CGTAAACTCTAAAAAGACAAAATATCAAGGTTCCAAGCGTATGTTTGGAC
AATTTAGATGTCCCAAATGTAATAGGACATGGGCTAGTGGAAATACATGG
GCTAATACCGCACAACAATGTCAAAGCTGTTTAATTGACGTTTTTCCATA
CCATCAACAAAGATTAGAAAGACCATCTGTCCTCACAGGCCCAGGAAAAG
AACATCCTCAACATTTATGGGGAATGTGAGCTGATTGGTCAAGAACGAAA
TGGCCAGGGCTTCGTTGTTATCGATTGCTAAAGACATCAGTAACCTATTC
TttgttgtaaaatttgtaattttgttttgaaatttgtataTTTAATTAAT
TTGGTAATCGTGCTGTGTAAATAAAACGGAAAAAAGAATCTCA Run BLAST on NCBI transcript from alignment at scaffold_243:234595..236199- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054603 ID=TCONS_00054603|Name=TCONS_00054603|organism=Clytia hemisphaerica|type=transcript|length=1605bp|location=Sequence derived from alignment at scaffold_243:234595..236199- (Clytia hemisphaerica)
TTCGGCTGGTTTTTTTTTAGAACTTGTTCTAGAATATTCTATCATGAAAC
ATTATAAAAAAAGCTAGTTGGAACGTATTTGCTTGAGTACTTTGCAATAA
GAGAGGTGCAGAGATTTTCAAGTTTAGATTTGGTTTCATAAAATATTGAG
GTTTTGGTAAGTTATTATCTAAAAGTTACAAGGAGCACAAAGATGTCGAC
CGTAAACTCTAAAAAGGTATTTTTCATTTGCTTTTCTCCTTAAGCTCAAT
TATTTTCTGCTATGTACAACGCTCTCCACAAAATTTGGCTTAAAGTACAT
CCTCGTTATCAAACCCCATGGCGATTTAATAAGAATACACCCCTGCTTCT
TATATTGTATTTGAATTTTTTTTCTCCAAAAATCATTTCTCGAACTTTGA
CGTTTTCAATTTTAATTTTTTCACTTTATCATCACTTTTTTTCTTTCATG
CTCCGATGTCTGAGTTTAGAATTCAAGAAACTTAAACCCAAAATTATTAG
TTTGTAAAATCCCATCGGTAGTTTACAATTTATCTTTTACTTCCTTTTGT
TATGTGTTTTAGACAAAATATCAAGGTTCCAAGCGTATGTTTGGACAATT
TAGATGTCCCAAATGTAATAGGACATGGGCTAGTGGAAATACATGGGCTA
ATACCGCACAACAATGTCAAAGCTGTTTAATTGACGTTTTTCCATACCAT
CAACAAAGATTAGAAAGACCATCTGTCCTCACAGGCCCAGGAAAAGAACA
TCCTCAACATTTATGGGGAATGTGTAAGAGATTGGGACGATATTGCCGTG
ATCAAGATGATTATAAAGATTTAACAAACTATTTTGGAGGTCTGCGAATT
TAAGGTAACTTGTTCATACTTACACCCCTGTGTTACAGATCCACTAGGAC
CCCAGCCCCACTAGAAAATATGGCAAAAAGTTCGTCCCCGGTGGGAAAAA
TACCCTAGAATTTCGGCCCCACTGGAAAATATTGATTTCACCCCATTTGA
AATTCAATGTTTAAAAATTGCACTACGAAACCATCCCCACTGGATTTTTT
AATCTTGGAACAATAGAATTTTTATACCCATCATTGAGATTTCAATAGAA
GTTTTTATCCCCGCTGTGGGAAAAAGTTTCACTGGGGCTGTGAGACAGGT
GTGTATACTTTAAATTAATTCTGCAATTATGCATTTTCTTTCTAGGTTAT
CCAGTTGTTGAATCTTGCTGACTCGAACTTCTATTATTCGAATCTTTCTA
TAATTCGAAATAAAAAAGAAATAATTCTCAGCTCCCGTCATAGAAAAAAA
CTTGCTTATCATTATACGAATCTTTCTGTATGTAATTCGAACAAATTAGA
ATTCCCGTTCGAACTCGAATCAAGCTCGAATTAGCGAGAGTCATCTATAC
GTCAGCTTTAATTTACTTTTTAATAATTCAACTTTATAGGAGCTGATTGG
TCAAGAACGAAATGGCCAGGGCTTCGTTGTTATCGATTGCTAAAGACATC
AGTAACCTATTCTTTGTTGTAAAATTTGTAATTTTGTTTTGAAATTTGTA
TATTTAATTAATTTGGTAATCGTGCTGTGTAAATAAAACGGAAAAAAGAA
TCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054603-exon-scaffold_243-1575043694:235984..236199 | TCONS_00054603-exon-scaffold_243-1575043694:235984..236199 | Clytia hemisphaerica | exon |
| TCONS_00054603-exon-scaffold_243-1575043694:235427..235637 | TCONS_00054603-exon-scaffold_243-1575043694:235427..235637 | Clytia hemisphaerica | exon |
| TCONS_00054603-exon-scaffold_243-1575043694:234595..234760 | TCONS_00054603-exon-scaffold_243-1575043694:234595..234760 | Clytia hemisphaerica | exon |
| TCONS_00054603-exon-scaffold_243-1510915933:235984..236199 | TCONS_00054603-exon-scaffold_243-1510915933:235984..236199 | Clytia hemisphaerica | exon |
| TCONS_00054603-exon-scaffold_243-1510915933:235427..235637 | TCONS_00054603-exon-scaffold_243-1510915933:235427..235637 | Clytia hemisphaerica | exon |
| TCONS_00054603-exon-scaffold_243-1510915933:234595..234760 | TCONS_00054603-exon-scaffold_243-1510915933:234595..234760 | Clytia hemisphaerica | exon |
| TCONS_00054603-exon-scaffold_243-1491911889:235984..236199 | TCONS_00054603-exon-scaffold_243-1491911889:235984..236199 | Clytia hemisphaerica | exon |
| TCONS_00054603-exon-scaffold_243-1491911889:235427..235637 | TCONS_00054603-exon-scaffold_243-1491911889:235427..235637 | Clytia hemisphaerica | exon |
| TCONS_00054603-exon-scaffold_243-1491911889:234595..234760 | TCONS_00054603-exon-scaffold_243-1491911889:234595..234760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:234595..236199 - |
Blast
BLAST of TCONS_00054603 vs. Swiss-Prot (Human)
Match: ZCH24 (Zinc finger CCHC domain-containing protein 24 OS=Homo sapiens GN=ZCCHC24 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 6.609e-20 Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 217 TKYQGSKRMFGQFRCPKCNRTWASGNTWANTAQQCQSCLIDVFPYHQQRLERPSVL--TGPGKEHPQHL 417
T YQG KR FG+++CPKC R W SGN+WAN Q+C C I+V+P+ Q+ LE+P L + KEHPQHL
Sbjct: 158 TPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHL 226
The following BLAST results are available for this feature:
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