|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054611 ID=TCONS_00054611|Name=TCONS_00054611|organism=Clytia hemisphaerica|type=transcript|length=3259bpRun BLAST on NCBI protein sequence of TCONS_00054611-protein >TCONS_00054611-protein ID=TCONS_00054611-protein|Name=TCONS_00054611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=853bp NYNRLMMEVSFSGVTFSSNFDSGNLARVEQVKPEDVKVPAETPDFIESPDRun BLAST on NCBI transcript from alignment at scaffold_243:298725..323588- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00054611 ID=TCONS_00054611|Name=TCONS_00054611|organism=Clytia hemisphaerica|type=transcript|length=24864bp|location=Sequence derived from alignment at scaffold_243:298725..323588- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_243:298725..323588- >TCONS_00054611 ID=TCONS_00054611|Name=TCONS_00054611|organism=Clytia hemisphaerica|type=CDS|length=28182bp|location=Sequence derived from alignment at scaffold_243:298725..323588- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00054611 vs. Swiss-Prot (Human)
Match: CBPC5 (Cytosolic carboxypeptidase-like protein 5 OS=Homo sapiens GN=AGBL5 PE=1 SV=1) HSP 1 Score: 583.563 bits (1503), Expect = 0.000e+0 Identity = 319/656 (48.63%), Postives = 420/656 (64.02%), Query Frame = 2
Query: 20 MEVSFSGVTFSSNFDSGNLARVEQVKP-----EDVK--VPAETPDFIESPDLEFNLWTSPDAAGTPYENGNRTWFYFSVRGGSLPNKTLRFNIMNLNRQSRLYSQGLNPFFRVSHGKHSSWQQVKDRCTYETVDGNFQISFLHSFTDVTRMSTTYFAFCYPYSYTECQQYMNSLEEKYVQDEDKNSQDTD-IYFHRETLVTSNDGLKVDLLTVSSMKGITENREKTLLGLYPDREKERARIFNNKKIVFLTSRVHPGETPASFVFNGFLDFILRENDDRSIALRNSFVFKMVPMLNPDGVKRGHYRTDIFGVNLNRTYQNPDAFRQPSIFAIKTLMMYHHFN-RIDPKLCTTDLQQSASQQAIPTAPKGDLLARKSSTDPNLTSETALELHKRLKEVAFSSCETINEASDECTSMKEQVQEKQGKPLDPDTHVGYDDMNSP-MKGTKELNLNKNNPD------NGVFIYIDLHGHASKRGCFIYGNHFTRESEMVDCMLLPKLISVNSLHFDFQACNFTEKNMYHKDKKDGLSKEGSGRVSMFKALGIIHSYTLECNYNTGRATNPISPATLDQGRATPPPQPGFPPRYTPEHYEEVGRGTAVAILDLINRNPWSRLPTSEYKSLNGVRDWLSKHIKNNTKVLSQQTKVNLKKKNG 1939
ME+ G+ FSS FDSGNLA VE+V+ E V A T SPD EFN+WT PD A T +ENGNR+WFYFSVRGG +P K ++ NIMN+N+QS+LYSQG+ PF R + W++++DR T+E + F +SF+H F + R +TT+FAFCYP+SY++CQ+ +N L++++ ++ +S D IY+HRE L S DGL+VDLLT++S G+ E+RE L L+PD R F K+I FL+SRVHPGETP+SFVFNGFLDFILR +D R+ LR FVFK++PMLNPDGV RGHYRTD GVNLNR Y PDA P+I+ K +++YHH + R++ + + + S P AP DL E A L NEA +C ++ + K +P +NS + + L ++ PD +GV Y+DLHGHASKRGCF+YGN F+ ES V+ ML PKLIS+NS HFDFQ CNF+EKNMY +D++DG SKEGSGRV+++KA GIIHSYTLECNYNTGR+ N I A D GRA+PPP P FP RYT E +E+VGR A+A LD+ NPW R+ SE+ SL +R W+ KH++ N++ LS V + KK G
Sbjct: 1 MELRCGGLLFSSRFDSGNLAHVEKVESLSSDGEGVGGGASALTSGIASSPDYEFNVWTRPDCAETEFENGNRSWFYFSVRGG-MPGKLIKINIMNMNKQSKLYSQGMAPFVRTLPTR-PRWERIRDRPTFEMTETQFVLSFVHRFVE-GRGATTFFAFCYPFSYSDCQELLNQLDQRFPENHPTHSSPLDTIYYHRELLCYSLDGLRVDLLTITSCHGLREDREPRLEQLFPDTSTPRPFRFAGKRIFFLSSRVHPGETPSSFVFNGFLDFILRPDDPRAQTLRRLFVFKLIPMLNPDGVVRGHYRTDSRGVNLNRQYLKPDAVLHPAIYGAKAVLLYHHVHSRLNSQ---SSSEHQPSSCLPPDAPVSDL-------------EKANNLQ--------------NEA--QCGHSADRHNAEAWKQTEP----AEQKLNSVWIMPQQSAGLEESAPDTIPPKESGVAYYVDLHGHASKRGCFMYGNSFSDESTQVENMLYPKLISLNSAHFDFQGCNFSEKNMYARDRRDGQSKEGSGRVAIYKASGIIHSYTLECNYNTGRSVNSIPAACHDNGRASPPPPPAFPSRYTVELFEQVGRAMAIAALDMAECNPWPRIVLSEHSSLTNLRAWMLKHVR-NSRGLSSTLNVGVNKKRG 616 The following BLAST results are available for this feature:
BLAST of TCONS_00054611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.