TCONS_00054625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054625
Unique NameTCONS_00054625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2052

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054625 ID=TCONS_00054625|Name=TCONS_00054625|organism=Clytia hemisphaerica|type=transcript|length=2052bp
TAAAAACTTATACTAAactaaatagaatttttttttttgatttgaatatt
AGAAGTTTGATGGTTCGGATATTGAAACTACAATTTTATAACAATAAAAT
TTAAATTGTTATTCTCCTTGCTACATAcaataacaaaacaaaatgAGAGA
GTGCGTATCAATCCATATTGGACAAGCCGGTTGTCAAATCGGTAACGCAT
GTTGGGAACTATACTGTCTGGAGCACGGTATTCTTCCCGATGGTACTCCT
AACCCTAACCATGAAAAGGAACAAGGAGACTCTGCTGTTTCTTTTTACTC
CGAAATGGAAGAAACCGGCCGCCAAGTTCCGCGAGCTGTTTATGCTGATT
TAGAACCCACTGTTTTAGacGAAGTGCGAACCGGTGCTTACCGTGAGCTT
TTTCATCCGGATCAACTAATTAATGGAAAAGAAgatgcagcaaacaactt
tgcACGTGGTCACTACACGATTGGTCGAACCCTTATTGACGAGATTATCG
ACAAAGTTCGAAAACTTACGGACAACTGTTGTGGTCTTCAAGGTTTCTTG
ATCTTCCATTCTTTCGGCGGTGGTACCGGATCTGGATTGACCGCACGTCT
TATGGAACGTCTCTCTGTCGACTACGGCAAAAAATCTAAACTCCAATTTT
CCGTATACCCAGCTCCACAAGTCTCGACAGCTGTTGTTGAACCTTACAAC
TCAGTTCTCACCACACATTTTACTTTCGATCATTCCGATTGTGCTTTCAT
GGTTGATAATGAAGCTATCTATGATATCTgtcgaaaaaatttgaatattg
aaCGACCTAACTATACCAATCTGAATCGATTAATCTCTCAAGTTGTCTCA
TCTATCACAGCTTCTCTACGGTTCGAAGGTGAATTGAATGTTGACTTGAA
CGAATTCCAAACTAACTTGGTGCCGTATCCCCGTATCCATTTCCCATTGT
CAAGTTTTGCTCCAATCTTGGCCCCTGATAAAGCACAAAAATCGTCGTTA
CACGTCGCTGAGATCactcaaaatgtttttaaacaaGAAAATCAAATGGT
AAAATGTGATCCCAAACAAGGAAAATACATGTCATGTTGTTTACTTTACC
GTGGAGATGTTGGCCCTCAGGATGTCAACAAGGCTATTGCAGGAGTCAAA
GCCAAATCAGATATTCAATTTGTTGATTGGTGTCCAACTGGATTTAAAGT
CGGTATTAACAACCAGACGTTACACGCACAAGAAGGTAGCGACATGGCAC
CTGTTAAACGTGCTCTCTGTATGTTGAGCAACACCACTGCAATGGCTGCA
TTGTGGGCACGTTTGGATcataaatttgatttgatgTACCGAAAGAGAGC
TTTTGTTCATTGGTATGTCGGTGAAGGTATGGAAGAAGGTGAATTCAATG
AAGCTCGTGAAGATTTGGCTGGCCTTGAGCGTGATTATGAAGAAGTGGGC
GGTGATTCGCCAAACTCTGATGAAGGAGAGATGGACGATGAATATTAAAC
CCCCTGACCGCCCTatttagaaacattttttttccacgatcaatcaataa
atcactTTGAACCATAACCTTTTGACGTTGCATTTCTTTTATGGTATAAG
TGAAGTTTTTTGATGTGAcacctttttttagaaaaaattctgtATAAGTT
AGAACCCACCTTCCCTTTCAACACAATAATTTTTCATCTCGAATATACTT
GACCACCGAGCCACATCAGTCCTAATGAACCACAGGGCTATTCCGCACTT
TAATCCaagtataaaatttataaacagaattttataagaaaaatttttga
tacAACTATTTATTATAGCCATATACATGGATATTTTATTGTCGTGTATA
ATTATTATTGTCTTTTCCTCTCACTTTTAAAGTATTTGTCTGTAAGAAAA
ACCATTTTAaataactttaaatttttttttaaattatgtttgTCATTATA
GGAAAAACCTTTGGAATTTTTACAACTGTTCTTATCGGTTTTGTATGTAA
ATAGTAAACGTAGTTATGGACAagacaaattaaaaacaaatttcgaaaaa
ta
Run BLAST on NCBI

transcript from alignment at scaffold_243:370935..377653-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054625 ID=TCONS_00054625|Name=TCONS_00054625|organism=Clytia hemisphaerica|type=transcript|length=6719bp|location=Sequence derived from alignment at scaffold_243:370935..377653- (Clytia hemisphaerica)
TAAAAACTTATACTAAACTAAATAGAATTTTTTTTTTTGATTTGAATATT
AGAAGTTTGATGGTTCGGATATTGAAACTACAATTTTATAACAATAAAGT
ATACTCTTTATAATTGATTTTTGAGACTTAGCTGCACTTGGCGTAATCGA
GTATTTCCTTGCTCCTGCTATGAATCGAAATTTATGTTAAGCTTTCAGTA
TCTCTTGCTTTAATTCCATTTTTTCATACTCTTGCCTATCTCTACTTGAT
TTTTAGCCACTCCAGGTTAAAAAGTGTTTTTGTGTTCTACCTTGAGGGAA
CTAATTATAGCGGGAACTAATTTTCACGGTCGAAAAAAAAATCTGAAAAA
TTTCATTTTGCGGGAATTGATTTTCGCATTTTTGCCTTACTTTGGACACA
TTTCTTTCATTTTACTAGGGATTTTTCAATTTTTTTGATGAAAATTGGCC
AAATTTGTAATTCGCGGTTTATGCCGAAAAACTGCAAAAAAAGCGAAAAT
TTGTTCCCTTAAGGTACTTACGTTTCACGCTGTCATTCTTATGAAAATTT
TTCTTATAAAAAAGTTCGATTAAGATTTATATCAATTCTTACACTTGCTA
ATCAAAAGTCTTTCTTTACTTGACAAATTATATGTTGAGATCTTTTTAAG
ATGAAGACCGGTTATTTTTCATTAGAGGCATCCGATTTTGTGCAACTTGC
CGACTGGTGTTATTAATTAATCAATTTGTGGATCACTTATATTTTAATCA
AATTATCCATTCTTAATTATTTATTCATTTTATTTGACTGTGTGTCATTT
TTTGAAGACTTTGGCTCGCCATGTTTGCAAACACCAATTCTTTTCGTCCT
ATCAATTTTTCATTTGTTTTGAATTGTTTGATTGAGTGTAATCTTGAACT
TTGATTGGCTCTCGAAACATTGAATGACTTTCTCAAAGTAGCAATAAAAT
TGAACTCTGGATGGATTTCATTGGTTATTTAGTGTGATTTTTCAGAGTAC
TTTGAGCATTTTTGATAGCGTCTTTCTAAGCACACCGGTTTGAATCAGGT
ATTCTGGATTCAGATTGAAGAAATTTGATTCATACGAAAAAAAAAGGGAA
GAAGATTTCTCTGTTGCTTTTTTATCTCGAGCACACCGTCTCATTTTGCA
GGGGAAATCAGAAATCTCAAGACGTTACTGTGACAAAAAGATTTTTTTGC
AATTACTTGACCTTGTTTGATTATTTTTTGAATTATTTTTCTCGACAGAT
TTAAATTGTTATTCTCCTTGCTACATACAATAACAAAACAAAATGGTAAG
TAAATTTGTTATATTTATTTGTTGGTTGAGCCTGCAGGTTCTTACAGGTT
CATCTTTGTGTTTTTATACATACCAAATTTTGTTCGCATCGACCTATCTG
GGGGTGGGGATGGGTGAAAATGGTCACCTAATTATTTCAGTTTTAAGAGG
AAAGGGATTTATCATTTTCTGGGACGAGTACGATTGAACAACATTTAGAA
ATGTTTTTTTCTTGGTTTTAATACGTTTTTATTTCTTGCAAATGAAATTA
CACCTTGTGGTTTTGAAAAGGGTTCTTTCTGACCCGACGAAGTTTACTAC
CTCAGATTATTTCATTTGACCTGAGTGCTCTTGAAATCGAGTTTATTACA
AAACACTTTGAAATGAAAGTCCTATTGGAATTGTTGTTCGAAATTTAAAG
TATACAGCTTTTCTGTTCTAAATTTTCTTTTAAACTCTCGGTTTCAGACT
ATTTATGAAAATAACAAAGGAACTTTTCGTTAAAAGTGAATTGGGCAATG
ATTTCTGCAAAAAAATTGCGAGCTAAAAAAAATTCTCCAAAAAAAGAAGA
TCTTGCAAAATCAGCGGCGACCCCTTGTTGTGAACTTTGAAACAAGTAAT
TCACTGTCATGAATAAATTATGCTGGATTTCTTTTCAACCAATCATTCTC
TAGTCTTTCTATCAGCAAGGCGTTCATTCGTTGATATACTAAATTATGCA
TGTGGTTTACATATGAACCTCCTTATATCATCATTCCGTTTCTAGCTTGA
ACCGTCATAGCAATAATTTATTCATAAATGGGTCGTCCAGAATAATTAAT
CAATTTTTTTTTCTGCTCGCAATTTTTGTTCAAGTCTAGAAAATCTCCGG
GATAAACACAAAGGAAAATGATAACTTCCTATTACTTCCAAATTTCATTC
ATTCATCTTTCCACGAATGGTTTTAGGCAAATCGAAATAATATCACATTC
CTAGCGTTTGCCGATGTTATGAACCGTCTATAACAAACTTTTTGCCATCA
TGTTTTCTCCCTTTTTCTCTTAGAGAGAGTGCGTATCAATCCATATTGGA
CAAGCCGGTTGTCAAATCGGTAACGCATGTTGGGAACTATACTGTCTGGA
GCACGGTATTCTTCCCGATGGTACTCCTAACCCTAACCATGAAAAGGAAC
AAGGAGACTCTGCTGTTTCTTTTTACTCCGAAATGGAAGAAACCGGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTAAATTTGTATATTTTTGTAAATTTTGAATATAA
TAAAATAAAACCAAGAAGAACACAAACATGAAATTTTGTATTTCACGAGT
TTCTCAGTTTACAATTCCTAGCATTTGCCGATGTTATGAACCGTCTATAA
CTAACTTTTTTGCCATCATGTTTTCTCCCTTTTTCTCATTTAGAGAGAGT
GCGTATCAATCCATATTGGACAAGCCGGTTGTCAAATCGGTAACGCATGT
TGGGAACTATACTGTCTGGAGCACGGTATTCTTCCCGATGGTACTCCTAA
CCCTAACCATGAAAAGGAACAAGGAGACTCTGCTGTTTCTTTTTACTCCG
AAATGGAAGAAACCGGCCGCCAAGTTCCGCGAGCTGTTTATGCTGATTTA
GAACCCACTGTTTTAGGTAAGGTCTTCATTTGTGAGTTTTCTACGGAAAC
TAATTGTTCGCTTCTTCAATCGGATAAATTTCACACTGATTTAAATTTGC
GAGTTACCGATCTCGAGATTTAATTTCGCGAAAATAAAAAGAATTAACAA
AGATGCGAATAAGAAATTCACCTTAAATTCAAACATATATTTCTTATTAT
GTCTTGGGAAAACGAATGACAAAATTTTCGTCTAATCTCGAAAAAAACGG
AACAAATTTTATATCCTCAAAATTTATTTTAGACGAAGTGCGAACCGGTG
CTTACCGTGAGCTTTTTCATCCGGATCAACTAATTAATGGAAAAGAAGAT
GCAGCAAACAACTTTGCACGTGGTCACTACACGATTGGTCGAACCCTTAT
TGACGAGATTATCGACAAAGTTCGAAAACTTGTAAGTGTGGTCATGTCTT
GCTCTTTTGTGTAAAAGATTTATTGATTTTATAAATTTCACCCATCGAGA
TTTTAAGAACTGATTTGGAACACCAAATAGGAGATATCCTCGAACTAATG
CTCTTATAATGACGTTATATATTTAATTCCCTGCAAGAATCCTTTAACAC
ATTTGCTGCCGCCTGCAAGTAAACTCGTGGAGGAGTCAAAATACCGCTTG
TATTTCAAAGGGCTATAATTTTTCATTAAGAAATTTTTGCTTCTGCCGCT
TTTTATTGCATTTTGAAATCTACGTTAAATTCTGCGTCGATTGGTATAAT
ATGCAACTGTTACTTCCAAAGGAGTCTCAAACTTTCGTATTCTTTAAATT
CTATTTTCGTTTCTTTTGTGTTTCAGACGGACAACTGTTGTGGTCTTCAA
GGTTTCTTGATCTTCCATTCTTTCGGCGGTGGTACCGGATCTGGATTGAC
CGCACGTCTTATGGAACGTCTCTCTGTCGACTACGGCAAAAAATCTAAAC
TCCAATTTTCCGTATACCCAGCTCCACAAGTCTCGACAGCTGTTGTTGAA
CCTTACAACTCAGTTCTCACCACACATTTTACTTTCGATCATTCCGATTG
TGCTTTCATGGTTGATAATGAAGCTATCTATGATATCTGTCGAAAAAATT
TGAATATTGAACGACCTAACTATACCAATCTGAATCGATTAATCTCTCAA
GTTGTCTCATCTATCACAGCTTCTCTACGGTTCGAAGGTAAGTCAGAAAC
ATTACATGCTATGATGCCTTTACATCTCTGACGAAATGATGTGGATTTTG
TAGATATTTTGCCTAATTATTTGATTTTGTTTTTGTGTATAAGAAAACAA
TTGTTTGTATAAACTGATACATAAATAGTTTAATACTGTATAGAAAGATG
TAACTCCTATTGTCTTTAACTTTTAGGTGAATTGAATGTTGACTTGAACG
AATTCCAAACTAACTTGGTGCCGTATCCCCGTATCCATTTCCCATTGTCA
AGTTTTGCTCCAATCTTGGCCCCTGATAAAGCACAAAAATCGTCGTTACA
CGTCGCTGAGATCACTCAAAATGTTTTTAAACAAGAAAATCAAATGGTAA
AATGTGATCCCAAACAAGGAAAATACATGTCATGTTGTTTACTTTACCGT
GGAGATGTTGGCCCTCAGGATGTCAACAAGGCTATTGCAGGAGTCAAAGC
CAAATCAGATATTCAATTTGTTGATTGGTGTCCAACTGGATTTAAAGTCG
GTATTAACAACCAGACGTTACACGCACAAGAAGGTAGCGACATGGCACCT
GTTAAACGTGCTCTCTGTATGTTGAGCAACACCACTGCAATGGCTGCATT
GTGGGCACGTTTGGATCATAAATTTGATTTGATGTACCGAAAGAGAGCTT
TTGTTCATTGGTAAGCTATTTTGTCATCGTATTTTTTTATTTTGCTAACT
TGCAGCTCGAACTATAAACTTACTACTTTAGGCAACATGCTTTAACGTTT
TAAGTAATTTTGTAGCGCTCCAGCAACTTTTATCTCATTGATTCAAGTCA
GATACAAGTATTTATTGCCTGCTTAAGGGCAATTGGTTAATGTATTCGCT
TTTAGCTTTAGATAGCTTGTGATTCATTTTACTATCTTCAGGCTAAGAGA
TTGTAGCAACTTCAGTTCTGTATTTCAAAAGAAAATCATTAACTCATTTA
AAGTAAACTTTCTCATCTGTCGTTTACAGGTATGTCGGTGAAGGTATGGA
AGAAGGTGAATTCAATGAAGCTCGTGAAGATTTGGCTGGCCTTGAGCGTG
ATTATGAAGAAGTGGGCGGTGATTCGCCAAACTCTGATGAAGGAGAGATG
GACGATGAATATTAAACCCCCTGACCGCCCTATTTAGAAACATTTTTTTT
CCACGATCAATCAATAAATCACTTTGAACCATAACCTTTTGACGTTGCAT
TTCTTTTATGGTATAAGTGAAGTTTTTTGATGTGACACCTTTTTTTAGAA
AAAATTCTGTATAAGTTAGAACCCACCTTCCCTTTCAACACAATAATTTT
TCATCTCGAATATACTTGACCACCGAGCCACATCAGTCCTAATGAACCAC
AGGGCTATTCCGCACTTTAATCCAAGTATAAAATTTATAAACAGAATTTT
ATAAGAAAAATTTTTGATACAACTATTTATTATAGCCATATACATGGATA
TTTTATTGTCGTGTATAATTATTATTGTCTTTTCCTCTCACTTTTAAAGT
ATTTGTCTGTAAGAAAAACCATTTTAAATAACTTTAAATTTTTTTTTAAA
TTATGTTTGTCATTATAGGAAAAACCTTTGGAATTTTTACAACTGTTCTT
ATCGGTTTTGTATGTAAATAGTAAACGTAGTTATGGACAAGACAAATTAA
AAACAAATTTCGAAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034417XLOC_034417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054625-exon-scaffold_243-1575043694:377556..377653TCONS_00054625-exon-scaffold_243-1575043694:377556..377653Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1575043694:376359..376405TCONS_00054625-exon-scaffold_243-1575043694:376359..376405Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1575043694:373788..374010TCONS_00054625-exon-scaffold_243-1575043694:373788..374010Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1575043694:373373..373521TCONS_00054625-exon-scaffold_243-1575043694:373373..373521Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1575043694:372617..372977TCONS_00054625-exon-scaffold_243-1575043694:372617..372977Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1575043694:371944..372427TCONS_00054625-exon-scaffold_243-1575043694:371944..372427Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1575043694:370935..371624TCONS_00054625-exon-scaffold_243-1575043694:370935..371624Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1510915933:377556..377653TCONS_00054625-exon-scaffold_243-1510915933:377556..377653Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1510915933:376359..376405TCONS_00054625-exon-scaffold_243-1510915933:376359..376405Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1510915933:373788..374010TCONS_00054625-exon-scaffold_243-1510915933:373788..374010Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1510915933:373373..373521TCONS_00054625-exon-scaffold_243-1510915933:373373..373521Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1510915933:372617..372977TCONS_00054625-exon-scaffold_243-1510915933:372617..372977Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1510915933:371944..372427TCONS_00054625-exon-scaffold_243-1510915933:371944..372427Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1510915933:370935..371624TCONS_00054625-exon-scaffold_243-1510915933:370935..371624Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1491911889:377556..377653TCONS_00054625-exon-scaffold_243-1491911889:377556..377653Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1491911889:376359..376405TCONS_00054625-exon-scaffold_243-1491911889:376359..376405Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1491911889:373788..374010TCONS_00054625-exon-scaffold_243-1491911889:373788..374010Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1491911889:373373..373521TCONS_00054625-exon-scaffold_243-1491911889:373373..373521Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1491911889:372617..372977TCONS_00054625-exon-scaffold_243-1491911889:372617..372977Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1491911889:371944..372427TCONS_00054625-exon-scaffold_243-1491911889:371944..372427Clytia hemisphaericaexon
TCONS_00054625-exon-scaffold_243-1491911889:370935..371624TCONS_00054625-exon-scaffold_243-1491911889:370935..371624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:370935..377653 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.405153	74.6162	79.6376	8.86119	18.259	3.52088	8.03019	8.80831	8.99894	83.9285	84.4122	49.7789	70.2347	11.9093	20.1387	34.0771	72.6131	26.8238	24.3474	6.20557	20.8195	36.5898	63.6897	42.6771	36.4461	0	0
Blast
[Close]
BLAST of TCONS_00054625 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0
Identity = 328/447 (73.38%), Postives = 376/447 (84.12%), Query Frame = 2 
Query:  143 MRECVSIHIGQAGCQIGNACWELYCLEHGILPDGTPNPNHEKEQGDSAVSFYSEMEETGRQVPRAVYADLEPTVLDEVRTGAYRELFHPDQLINGKEDAANNFARGHYTIGRTLIDEIIDKVRKLTDNCCGLQGFLIFHSFGGGTGSGLTARLMERLSVDYGKKSKLQFSVYPAPQVSTAVVEPYNSVLTTHFTFDHSDCAFMVDNEAIYDICRKNLNIERPNYTNLNRLISQVVSSITASLRFEGELNVDLNEFQTNLVPYPRIHFPLSSFAPILAPDKAQKSSLHVAEITQNVFKQENQMVKCDPKQGKYMSCCLLYRGDVGPQDVNKAIAGVKAKSDIQFVDWCPTGFKVGINNQTLHAQEGSDMAPVKRALCMLSNTTAMAALWARLDHKFDLMYRKRAFVHWYVGEGMEEGEFNEAREDLAGLERDYEEVGGDSPNS-DEGE 1480
            MREC+SIH+GQAG QIGNACWELYCLEHGI PDG    +     GD + + +      G+ VPRAV+ DLEPTV+DEVRTG YR+LFHP+QLI GKEDAANN+ARGHYTIG+ +ID ++D++RKL D C GLQGFL+FHSFGGGTGSG T+ LMERLSVDYGKKSKL+FS+YPAPQVSTAVVEPYNS+LTTH T +HSDCAFMVDNEAIYDICR+NL+IERP YTNLNRLISQ+VSSITASLRF+G LNVDL EFQTNLVPYPRIHFPL+++AP+++ +KA    L VAEIT   F+  NQMVKCDP+ GKYM+CCLLYRGDV P+DVN AIA +K K  IQFVDWCPTGFKVGIN Q      G D+A V+RA+CMLSNTTA+A  WARLDHKFDLMY KRAFVHWYVGEGMEEGEF+EARED+A LE+DYEEVG DS +  DEGE
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGE 447
The following BLAST results are available for this feature:
BLAST of TCONS_00054625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+073.38Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
back to top