TCONS_00054628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054628
Unique NameTCONS_00054628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2014

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054628 ID=TCONS_00054628|Name=TCONS_00054628|organism=Clytia hemisphaerica|type=transcript|length=2014bp
GTATGTTAATCAAGatTTATTATCCAGAGCACGGAATTGTTCACAGAGGT
ATGGCGTAAGATTTAAATTGTTATTCTCCTTGCTACATAcaataacaaaa
caaaatgAGAGAGTGCGTATCAATCCATATTGGACAAGCCGGTTGTCAAA
TCGGTAACGCATGTTGGGAACTATACTGTCTGGAGCACGGTATTCTTCCC
GATGGTACTCCTAACCCTAACCATGAAAAGGAACAAGGAGACTCTGCTGT
TTCTTTTTACTCCGAAATGGAAGAAACCGGCCGCCAAGTTCCGCGAGCTG
TTTATGCTGATTTAGAACCCACTGTTTTAGacGAAGTGCGAACCGGTGCT
TACCGTGAGCTTTTTCATCCGGATCAACTAATTAATGGAAAAGAAgatgc
agcaaacaactttgcACGTGGTCACTACACGATTGGTCGAACCCTTATTG
ACGAGATTATCGACAAAGTTCGAAAACTTACGGACAACTGTTGTGGTCTT
CAAGGTTTCTTGATCTTCCATTCTTTCGGCGGTGGTACCGGATCTGGATT
GACCGCACGTCTTATGGAACGTCTCTCTGTCGACTACGGCAAAAAATCTA
AACTCCAATTTTCCGTATACCCAGCTCCACAAGTCTCGACAGCTGTTGTT
GAACCTTACAACTCAGTTCTCACCACACATTTTACTTTCGATCATTCCGA
TTGTGCTTTCATGGTTGATAATGAAGCTATCTATGATATCTgtcgaaaaa
atttgaatattgaaCGACCTAACTATACCAATCTGAATCGATTAATCTCT
CAAGTTGTCTCATCTATCACAGCTTCTCTACGGTTCGAAGGTGAATTGAA
TGTTGACTTGAACGAATTCCAAACTAACTTGGTGCCGTATCCCCGTATCC
ATTTCCCATTGTCAAGTTTTGCTCCAATCTTGGCCCCTGATAAAGCACAA
AAATCGTCGTTACACGTCGCTGAGATCactcaaaatgtttttaaacaaGA
AAATCAAATGGTAAAATGTGATCCCAAACAAGGAAAATACATGTCATGTT
GTTTACTTTACCGTGGAGATGTTGGCCCTCAGGATGTCAACAAGGCTATT
GCAGGAGTCAAAGCCAAATCAGATATTCAATTTGTTGATTGGTGTCCAAC
TGGATTTAAAGTCGGTATTAACAACCAGACGTTACACGCACAAGAAGGTA
GCGACATGGCACCTGTTAAACGTGCTCTCTGTATGTTGAGCAACACCACT
GCAATGGCTGCATTGTGGGCACGTTTGGATcataaatttgatttgatgTA
CCGAAAGAGAGCTTTTGTTCATTGGTATGTCGGTGAAGGTATGGAAGAAG
GTGAATTCAATGAAGCTCGTGAAGATTTGGCTGGCCTTGAGCGTGATTAT
GAAGAAGTGGGCGGTGATTCGCCAAACTCTGATGAAGGAGAGATGGACGA
TGAATATTAAACCCCCTGACCGCCCTatttagaaacattttttttccacg
atcaatcaataaatcactTTGAACCATAACCTTTTGACGTTGCATTTCTT
TTATGGTATAAGTGAAGTTTTTTGATGTGAcacctttttttagaaaaaat
tctgtATAAGTTAGAACCCACCTTCCCTTTCAACACAATAATTTTTCATC
TCGAATATACTTGACCACCGAGCCACATCAGTCCTAATGAACCACAGGGC
TATTCCGCACTTTAATCCaagtataaaatttataaacagaattttataag
aaaaatttttgatacAACTATTTATTATAGCCATATACATGGATATTTTA
TTGTCGTGTATAATTATTATTGTCTTTTCCTCTCACTTTTAAAGTATTTG
TCTGTAAGAAAAACCATTTTAaataactttaaatttttttttaaattatg
tttgTCATTATAGGAAAAACCTTTGGAATTTTTACAACTGTTCTTATCGG
TTTTGTATGTAAATAGTAAACGTAGTTATGGACAagacaaattaaaaaca
aatttcgaaaaata
Run BLAST on NCBI

transcript from alignment at scaffold_243:370935..379289-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054628 ID=TCONS_00054628|Name=TCONS_00054628|organism=Clytia hemisphaerica|type=transcript|length=8355bp|location=Sequence derived from alignment at scaffold_243:370935..379289- (Clytia hemisphaerica)
GTATGTTAATCAAGGTATTATTTTTCTAACTAATCTCATAANCAAATACG
TGCTTTGTCCTTCCAATGAATTCATGAATGCTGCTCGGAGAGAGTGCTCG
AAACATCAAGTGTCGAGTTTGGCGTAATCGCTTGTGTTTAGTGGGAAAAC
ATGAGCTTGCTCCTCAACAGAGTTTATAAGAATTTATAGAGTGATAAACA
TTGATAGATAGGCTTGCTCTTATTGGTTTTCACGCATCTATGAATGAATA
ATTTGGATGGATTAGAAACAATCAAAGACCTGTCAGTGAGTATGTTAATC
AAGGTATTATTTTTCTAACTAATCTCATAATCACTTTAACATTGACAATC
TGAGGTTTTTAAATTCGACAAGTTTTTTTTTTTATTTGAACATCCAAAAA
ATTGAGGCCTTCGAATGTTCTTAACTTTTTTAGTTTTAAGCCGAGAAATG
TTCTTGAAATATTCTTAATTTCACCATATTGTGAATATTTTTATGCAATT
TTCTAAGAAATTGGGTGTTTTAGATAAATGTTCTTAGTTTGTTCTTAATA
TTTTTGCCATCGAAGCCTTGTGTTTTTATATGGTTTGTTCTTACTAAAAA
ACGTTTACTATCCTTATCTTCGTGTGTCTTTGTAACAGAATAAAATGTGA
ATTTTGTAACATAATAGGTCAATTTTCTTAGTAATATTTTCTCATTCCCA
TTTGATTTGAGCACGTGATATAATGATATAATGACTCTCTCGATTTGTGG
GAGATAAGTAATTACTTAATCTTATTAATATTACATATTACGCATGTTAC
TTTGAAATATAATATTTTCTTTCAATTTAGATTTATTATCCAGAGCACGG
AATTGTTCACAGAGGTATGGCGTAAGGTAAGTTTCTGTATTCTCATTAAA
AAAGTTAAGGGTCAAAAAGGGGCATAAACTTGTTGGGGAAAAAAAGTCGT
GAAATAAGCCACTCGGAGAAACGTTAATTCTACTCAATAAATTTCGTCAA
TTCTCCTTAACAATATTTTTGAAAAGTTGTCTGACTGTTGCAGCTTAAGT
ATTTTGTTTGATACATGTTTTTTTATAAGAACAAACTATATAAGAACGTA
AGGCTTCGTTGGCCAAAATGTTAAGAATAAGTTGAGAACATTTCAAGGCT
TTGCGGACTCTAAAACACCCAATCTCCTAGGAAAATGGACAAAGATATTC
ACAAAATGGCCAAAATAAGAACATGTTAAAAACATTTTTAGACTTAAAGC
TCAAAAAGTCAAGAACATCCGAAGGCTTCAAAAATTTTGGATGTTCTTAT
AAAAGAAACGTGTAATGTTTAATAGTTATNCAAGAACATCCGAAGGCTCC
AAAAATTTTGGATGTTCTTATAAAAGAAACGTGTAATGTTTAATAGTTAT
ACGAATCCGTGGGATGGGAGACAAAATGAAATCTTTTGGCGGGCATTTGA
AAGTCGGGTGAATTAAAAGGTTCTTTATGAACTTTATCATGTTTAAACGT
TTCCAACATCTACACAGATCAGACTGTTTGAAAGTATGTAAAATTTCATG
AAAAAGAAAATCACTGTTGTATTATGCTGAATATACGTTTTGTTTTCAAA
ATATGTTTTCAAAAAATAAACTGAAAACTAAACTATTAAAAACTTATACT
AAACTAAATAGAATTTTTTTTTTTGATTTGAATATTAGAAGTTTGATGGT
TCGGATATTGAAACTACAATTTTATAACAATAAAGTATACTCTTTATAAT
TGATTTTTGAGACTTAGCTGCACTTGGCGTAATCGAGTATTTCCTTGCTC
CTGCTATGAATCGAAATTTATGTTAAGCTTTCAGTATCTCTTGCTTTAAT
TCCATTTTTTCATACTCTTGCCTATCTCTACTTGATTTTTAGCCACTCCA
GGTTAAAAAGTGTTTTTGTGTTCTACCTTGAGGGAACTAATTATAGCGGG
AACTAATTTTCACGGTCGAAAAAAAAATCTGAAAAATTTCATTTTGCGGG
AATTGATTTTCGCATTTTTGCCTTACTTTGGACACATTTCTTTCATTTTA
CTAGGGATTTTTCAATTTTTTTGATGAAAATTGGCCAAATTTGTAATTCG
CGGTTTATGCCGAAAAACTGCAAAAAAAGCGAAAATTTGTTCCCTTAAGG
TACTTACGTTTCACGCTGTCATTCTTATGAAAATTTTTCTTATAAAAAAG
TTCGATTAAGATTTATATCAATTCTTACACTTGCTAATCAAAAGTCTTTC
TTTACTTGACAAATTATATGTTGAGATCTTTTTAAGATGAAGACCGGTTA
TTTTTCATTAGAGGCATCCGATTTTGTGCAACTTGCCGACTGGTGTTATT
AATTAATCAATTTGTGGATCACTTATATTTTAATCAAATTATCCATTCTT
AATTATTTATTCATTTTATTTGACTGTGTGTCATTTTTTGAAGACTTTGG
CTCGCCATGTTTGCAAACACCAATTCTTTTCGTCCTATCAATTTTTCATT
TGTTTTGAATTGTTTGATTGAGTGTAATCTTGAACTTTGATTGGCTCTCG
AAACATTGAATGACTTTCTCAAAGTAGCAATAAAATTGAACTCTGGATGG
ATTTCATTGGTTATTTAGTGTGATTTTTCAGAGTACTTTGAGCATTTTTG
ATAGCGTCTTTCTAAGCACACCGGTTTGAATCAGGTATTCTGGATTCAGA
TTGAAGAAATTTGATTCATACGAAAAAAAAAGGGAAGAAGATTTCTCTGT
TGCTTTTTTATCTCGAGCACACCGTCTCATTTTGCAGGGGAAATCAGAAA
TCTCAAGACGTTACTGTGACAAAAAGATTTTTTTGCAATTACTTGACCTT
GTTTGATTATTTTTTGAATTATTTTTCTCGACAGATTTAAATTGTTATTC
TCCTTGCTACATACAATAACAAAACAAAATGGTAAGTAAATTTGTTATAT
TTATTTGTTGGTTGAGCCTGCAGGTTCTTACAGGTTCATCTTTGTGTTTT
TATACATACCAAATTTTGTTCGCATCGACCTATCTGGGGGTGGGGATGGG
TGAAAATGGTCACCTAATTATTTCAGTTTTAAGAGGAAAGGGATTTATCA
TTTTCTGGGACGAGTACGATTGAACAACATTTAGAAATGTTTTTTTCTTG
GTTTTAATACGTTTTTATTTCTTGCAAATGAAATTACACCTTGTGGTTTT
GAAAAGGGTTCTTTCTGACCCGACGAAGTTTACTACCTCAGATTATTTCA
TTTGACCTGAGTGCTCTTGAAATCGAGTTTATTACAAAACACTTTGAAAT
GAAAGTCCTATTGGAATTGTTGTTCGAAATTTAAAGTATACAGCTTTTCT
GTTCTAAATTTTCTTTTAAACTCTCGGTTTCAGACTATTTATGAAAATAA
CAAAGGAACTTTTCGTTAAAAGTGAATTGGGCAATGATTTCTGCAAAAAA
ATTGCGAGCTAAAAAAAATTCTCCAAAAAAAGAAGATCTTGCAAAATCAG
CGGCGACCCCTTGTTGTGAACTTTGAAACAAGTAATTCACTGTCATGAAT
AAATTATGCTGGATTTCTTTTCAACCAATCATTCTCTAGTCTTTCTATCA
GCAAGGCGTTCATTCGTTGATATACTAAATTATGCATGTGGTTTACATAT
GAACCTCCTTATATCATCATTCCGTTTCTAGCTTGAACCGTCATAGCAAT
AATTTATTCATAAATGGGTCGTCCAGAATAATTAATCAATTTTTTTTTCT
GCTCGCAATTTTTGTTCAAGTCTAGAAAATCTCCGGGATAAACACAAAGG
AAAATGATAACTTCCTATTACTTCCAAATTTCATTCATTCATCTTTCCAC
GAATGGTTTTAGGCAAATCGAAATAATATCACATTCCTAGCGTTTGCCGA
TGTTATGAACCGTCTATAACAAACTTTTTGCCATCATGTTTTCTCCCTTT
TTCTCTTAGAGAGAGTGCGTATCAATCCATATTGGACAAGCCGGTTGTCA
AATCGGTAACGCATGTTGGGAACTATACTGTCTGGAGCACGGTATTCTTC
CCGATGGTACTCCTAACCCTAACCATGAAAAGGAACAAGGAGACTCTGCT
GTTTCTTTTTACTCCGAAATGGAAGAAACCGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTAAATTTGTATATTTTTGTAAATTTTGAATATAATAAAATAAAACCAA
GAAGAACACAAACATGAAATTTTGTATTTCACGAGTTTCTCAGTTTACAA
TTCCTAGCATTTGCCGATGTTATGAACCGTCTATAACTAACTTTTTTGCC
ATCATGTTTTCTCCCTTTTTCTCATTTAGAGAGAGTGCGTATCAATCCAT
ATTGGACAAGCCGGTTGTCAAATCGGTAACGCATGTTGGGAACTATACTG
TCTGGAGCACGGTATTCTTCCCGATGGTACTCCTAACCCTAACCATGAAA
AGGAACAAGGAGACTCTGCTGTTTCTTTTTACTCCGAAATGGAAGAAACC
GGCCGCCAAGTTCCGCGAGCTGTTTATGCTGATTTAGAACCCACTGTTTT
AGGTAAGGTCTTCATTTGTGAGTTTTCTACGGAAACTAATTGTTCGCTTC
TTCAATCGGATAAATTTCACACTGATTTAAATTTGCGAGTTACCGATCTC
GAGATTTAATTTCGCGAAAATAAAAAGAATTAACAAAGATGCGAATAAGA
AATTCACCTTAAATTCAAACATATATTTCTTATTATGTCTTGGGAAAACG
AATGACAAAATTTTCGTCTAATCTCGAAAAAAACGGAACAAATTTTATAT
CCTCAAAATTTATTTTAGACGAAGTGCGAACCGGTGCTTACCGTGAGCTT
TTTCATCCGGATCAACTAATTAATGGAAAAGAAGATGCAGCAAACAACTT
TGCACGTGGTCACTACACGATTGGTCGAACCCTTATTGACGAGATTATCG
ACAAAGTTCGAAAACTTGTAAGTGTGGTCATGTCTTGCTCTTTTGTGTAA
AAGATTTATTGATTTTATAAATTTCACCCATCGAGATTTTAAGAACTGAT
TTGGAACACCAAATAGGAGATATCCTCGAACTAATGCTCTTATAATGACG
TTATATATTTAATTCCCTGCAAGAATCCTTTAACACATTTGCTGCCGCCT
GCAAGTAAACTCGTGGAGGAGTCAAAATACCGCTTGTATTTCAAAGGGCT
ATAATTTTTCATTAAGAAATTTTTGCTTCTGCCGCTTTTTATTGCATTTT
GAAATCTACGTTAAATTCTGCGTCGATTGGTATAATATGCAACTGTTACT
TCCAAAGGAGTCTCAAACTTTCGTATTCTTTAAATTCTATTTTCGTTTCT
TTTGTGTTTCAGACGGACAACTGTTGTGGTCTTCAAGGTTTCTTGATCTT
CCATTCTTTCGGCGGTGGTACCGGATCTGGATTGACCGCACGTCTTATGG
AACGTCTCTCTGTCGACTACGGCAAAAAATCTAAACTCCAATTTTCCGTA
TACCCAGCTCCACAAGTCTCGACAGCTGTTGTTGAACCTTACAACTCAGT
TCTCACCACACATTTTACTTTCGATCATTCCGATTGTGCTTTCATGGTTG
ATAATGAAGCTATCTATGATATCTGTCGAAAAAATTTGAATATTGAACGA
CCTAACTATACCAATCTGAATCGATTAATCTCTCAAGTTGTCTCATCTAT
CACAGCTTCTCTACGGTTCGAAGGTAAGTCAGAAACATTACATGCTATGA
TGCCTTTACATCTCTGACGAAATGATGTGGATTTTGTAGATATTTTGCCT
AATTATTTGATTTTGTTTTTGTGTATAAGAAAACAATTGTTTGTATAAAC
TGATACATAAATAGTTTAATACTGTATAGAAAGATGTAACTCCTATTGTC
TTTAACTTTTAGGTGAATTGAATGTTGACTTGAACGAATTCCAAACTAAC
TTGGTGCCGTATCCCCGTATCCATTTCCCATTGTCAAGTTTTGCTCCAAT
CTTGGCCCCTGATAAAGCACAAAAATCGTCGTTACACGTCGCTGAGATCA
CTCAAAATGTTTTTAAACAAGAAAATCAAATGGTAAAATGTGATCCCAAA
CAAGGAAAATACATGTCATGTTGTTTACTTTACCGTGGAGATGTTGGCCC
TCAGGATGTCAACAAGGCTATTGCAGGAGTCAAAGCCAAATCAGATATTC
AATTTGTTGATTGGTGTCCAACTGGATTTAAAGTCGGTATTAACAACCAG
ACGTTACACGCACAAGAAGGTAGCGACATGGCACCTGTTAAACGTGCTCT
CTGTATGTTGAGCAACACCACTGCAATGGCTGCATTGTGGGCACGTTTGG
ATCATAAATTTGATTTGATGTACCGAAAGAGAGCTTTTGTTCATTGGTAA
GCTATTTTGTCATCGTATTTTTTTATTTTGCTAACTTGCAGCTCGAACTA
TAAACTTACTACTTTAGGCAACATGCTTTAACGTTTTAAGTAATTTTGTA
GCGCTCCAGCAACTTTTATCTCATTGATTCAAGTCAGATACAAGTATTTA
TTGCCTGCTTAAGGGCAATTGGTTAATGTATTCGCTTTTAGCTTTAGATA
GCTTGTGATTCATTTTACTATCTTCAGGCTAAGAGATTGTAGCAACTTCA
GTTCTGTATTTCAAAAGAAAATCATTAACTCATTTAAAGTAAACTTTCTC
ATCTGTCGTTTACAGGTATGTCGGTGAAGGTATGGAAGAAGGTGAATTCA
ATGAAGCTCGTGAAGATTTGGCTGGCCTTGAGCGTGATTATGAAGAAGTG
GGCGGTGATTCGCCAAACTCTGATGAAGGAGAGATGGACGATGAATATTA
AACCCCCTGACCGCCCTATTTAGAAACATTTTTTTTCCACGATCAATCAA
TAAATCACTTTGAACCATAACCTTTTGACGTTGCATTTCTTTTATGGTAT
AAGTGAAGTTTTTTGATGTGACACCTTTTTTTAGAAAAAATTCTGTATAA
GTTAGAACCCACCTTCCCTTTCAACACAATAATTTTTCATCTCGAATATA
CTTGACCACCGAGCCACATCAGTCCTAATGAACCACAGGGCTATTCCGCA
CTTTAATCCAAGTATAAAATTTATAAACAGAATTTTATAAGAAAAATTTT
TGATACAACTATTTATTATAGCCATATACATGGATATTTTATTGTCGTGT
ATAATTATTATTGTCTTTTCCTCTCACTTTTAAAGTATTTGTCTGTAAGA
AAAACCATTTTAAATAACTTTAAATTTTTTTTTAAATTATGTTTGTCATT
ATAGGAAAAACCTTTGGAATTTTTACAACTGTTCTTATCGGTTTTGTATG
TAAATAGTAAACGTAGTTATGGACAAGACAAATTAAAAACAAATTTCGAA
AAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034417XLOC_034417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054628-exon-scaffold_243-1575043694:379276..379289TCONS_00054628-exon-scaffold_243-1575043694:379276..379289Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1575043694:378414..378459TCONS_00054628-exon-scaffold_243-1575043694:378414..378459Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1575043694:376359..376405TCONS_00054628-exon-scaffold_243-1575043694:376359..376405Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1575043694:373788..374010TCONS_00054628-exon-scaffold_243-1575043694:373788..374010Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1575043694:373373..373521TCONS_00054628-exon-scaffold_243-1575043694:373373..373521Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1575043694:372617..372977TCONS_00054628-exon-scaffold_243-1575043694:372617..372977Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1575043694:371944..372427TCONS_00054628-exon-scaffold_243-1575043694:371944..372427Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1575043694:370935..371624TCONS_00054628-exon-scaffold_243-1575043694:370935..371624Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1510915933:379276..379289TCONS_00054628-exon-scaffold_243-1510915933:379276..379289Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1510915933:378414..378459TCONS_00054628-exon-scaffold_243-1510915933:378414..378459Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1510915933:376359..376405TCONS_00054628-exon-scaffold_243-1510915933:376359..376405Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1510915933:373788..374010TCONS_00054628-exon-scaffold_243-1510915933:373788..374010Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1510915933:373373..373521TCONS_00054628-exon-scaffold_243-1510915933:373373..373521Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1510915933:372617..372977TCONS_00054628-exon-scaffold_243-1510915933:372617..372977Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1510915933:371944..372427TCONS_00054628-exon-scaffold_243-1510915933:371944..372427Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1510915933:370935..371624TCONS_00054628-exon-scaffold_243-1510915933:370935..371624Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1491911889:379276..379289TCONS_00054628-exon-scaffold_243-1491911889:379276..379289Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1491911889:378414..378459TCONS_00054628-exon-scaffold_243-1491911889:378414..378459Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1491911889:376359..376405TCONS_00054628-exon-scaffold_243-1491911889:376359..376405Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1491911889:373788..374010TCONS_00054628-exon-scaffold_243-1491911889:373788..374010Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1491911889:373373..373521TCONS_00054628-exon-scaffold_243-1491911889:373373..373521Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1491911889:372617..372977TCONS_00054628-exon-scaffold_243-1491911889:372617..372977Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1491911889:371944..372427TCONS_00054628-exon-scaffold_243-1491911889:371944..372427Clytia hemisphaericaexon
TCONS_00054628-exon-scaffold_243-1491911889:370935..371624TCONS_00054628-exon-scaffold_243-1491911889:370935..371624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:370935..379289 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.689e-06	0	68.25	45.1482	18.6358	19.65	25.0143	20.1824	19.9099	25.6055	46.8672	55.181	38.565	51.5647	31.0032	24.9402	32.6861	43.0379	7.06486	13.3643	8.54144	20.1677	24.6727	18.8436	82.4961	50.9808	1.934e-09	0.260827
Blast
[Close]
BLAST of TCONS_00054628 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 682.945 bits (1761), Expect = 0.000e+0
Identity = 328/447 (73.38%), Postives = 376/447 (84.12%), Query Frame = 3 
Query:  105 MRECVSIHIGQAGCQIGNACWELYCLEHGILPDGTPNPNHEKEQGDSAVSFYSEMEETGRQVPRAVYADLEPTVLDEVRTGAYRELFHPDQLINGKEDAANNFARGHYTIGRTLIDEIIDKVRKLTDNCCGLQGFLIFHSFGGGTGSGLTARLMERLSVDYGKKSKLQFSVYPAPQVSTAVVEPYNSVLTTHFTFDHSDCAFMVDNEAIYDICRKNLNIERPNYTNLNRLISQVVSSITASLRFEGELNVDLNEFQTNLVPYPRIHFPLSSFAPILAPDKAQKSSLHVAEITQNVFKQENQMVKCDPKQGKYMSCCLLYRGDVGPQDVNKAIAGVKAKSDIQFVDWCPTGFKVGINNQTLHAQEGSDMAPVKRALCMLSNTTAMAALWARLDHKFDLMYRKRAFVHWYVGEGMEEGEFNEAREDLAGLERDYEEVGGDSPNS-DEGE 1442
            MREC+SIH+GQAG QIGNACWELYCLEHGI PDG    +     GD + + +      G+ VPRAV+ DLEPTV+DEVRTG YR+LFHP+QLI GKEDAANN+ARGHYTIG+ +ID ++D++RKL D C GLQGFL+FHSFGGGTGSG T+ LMERLSVDYGKKSKL+FS+YPAPQVSTAVVEPYNS+LTTH T +HSDCAFMVDNEAIYDICR+NL+IERP YTNLNRLISQ+VSSITASLRF+G LNVDL EFQTNLVPYPRIHFPL+++AP+++ +KA    L VAEIT   F+  NQMVKCDP+ GKYM+CCLLYRGDV P+DVN AIA +K K  IQFVDWCPTGFKVGIN Q      G D+A V+RA+CMLSNTTA+A  WARLDHKFDLMY KRAFVHWYVGEGMEEGEF+EARED+A LE+DYEEVG DS +  DEGE
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGE 447
The following BLAST results are available for this feature:
BLAST of TCONS_00054628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+073.38Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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