TCONS_00054634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054634
Unique NameTCONS_00054634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054634 ID=TCONS_00054634|Name=TCONS_00054634|organism=Clytia hemisphaerica|type=transcript|length=2094bp
AAGCACTTTCATGTACTGAAGATGAGAAAAGTCACCAATATGGCAAATCT
ATCTGGTCATCGGCAGTCTTTTCTCCCATCTAATTTAACAAATTGTCAAG
ATGAAAACATTAATTGGCATTTTGATAAAGATATTGGTTGGTTTGGCTTT
GACTTTTCTGGGAGATACTACACATTCCATTTTGATGATGGGAAGATGTA
TCCTGATGGCAATGAACGTCCTATAGAAGCTCCAGCCGATTTTGATTGGA
ACAGCATTTTTTCTAGAATCAAAGTGTATCattttgataaacaaaaagaa
caacttCATTCTAGTTACGTCAATCTATTGAGCAGAGATTACTCTAAAGT
AAAAAGTTCATGCTATGATCCTGTTAACATGAGATGGTTTGAAATTgtca
aatcttcaaaaaatgataAGGAGAAAACTTATACAATTTATAGTGGCTGT
ATTAGAAGCTTGCTTGGGACTGGTTCCTCTATAACAATTTATACCAACAA
TGTCAGGGAATATAACACAATCAATCTAACTTACCCAAAGAATATGAGAA
TCACCTTCGATTTTGAATTTGTTAGAACTACCTCTGGAAATTTCCTCATT
TTGATGTCCTGTTATCCAGATAAAGGAAGGTTCACCATGGATTTGATACA
GTACGATGATGAAAAGATTTCCCACTTCCGACGTTTTTCTTTTGCCCATG
ATCATGGCTCTGATGAAGAAGGTGAAGAAGCAGGCATGGATTTTTATAAC
ATGGGTTTTGACTTAGAATCAAACAATTGAAAAAGGGAGCAAGCCTTGGA
AGGTTTCTGCTTTTGATTTCACTGGTAATGAATTGTTTACAGTTGAAATC
CCTGAACAACTTTCAAAAGTTATATCCTACATGTCCCTCATTTCAGGCTC
ACTATTTTTTATGGTTTCAAGAGATGTGAATTTTGGTCTAATGAGTATTA
GTACTAATGGagtgaaaatttgtaaacaattcAAATTAGATAAAGCTCCC
CATGGTGAAATGTTAACAAACTCGTATAAAGTATTGAAGCGTTTTGACAA
GCATTTTCTTTGTGTCAGCAGCAGGAGTGTATGGGATGATTGCTCCTACC
ATCTTTTTGATACGGAAACAGAAAAATTGGTTTACAAACATTCTACTGAT
GCCACATCTATAATTTATTGGGAGTTTAACTGGAACTTACAAGAATTTGC
TTGTTGCACAAATGAGAATATTTTTAAGGTATTCACCACTGGATACAAAT
CCGATAGCTTGAAGGATAAAGCTTGACAAGCTTGTTTGGAATCTTACAAT
AAAGATCAGTTAAATGCAAACCTTCCCTCTTCCCTTGTGAAGTATATTGA
TGCTTAATTACACACTGTATGATGAATTCATTTGTTAGAACCTGCACTAT
GTTCCTATTTTTATAGAATATTACACTTTGTAATATATTTGACATcttct
gtttatttttattcacaATATTTAAACACTGACTGGTAAAATATTGACTT
CCGTTTCTCTCCTCCTCTCTATAAGgaatattttgtttaaaatatagaaa
attttcattttattacagATCCATTTACCTGATGATCCTGTAAGCGTGAA
ACAGACTGtagtatgttttaatttttgtgagaacaaaatttttgatttta
ttacatGATTAAAATGATTACTACAAGTCTCTTCTTGTCATTCTAACCTC
CTTCTTACCTTATATATACGCCCAAATATTAAGCTCACCTTTTTATTATG
GTTttctttttgtgtttgttttttcgCTACATTAATATTGAAGGAAACCT
GTTTTTAAGACTAgctgtttatattttttgaaatttatcaataaagacat
ttattttgttgtttttcttgccGTAACTGAAAACAgacattttttaatat
tttcttgtaGATTCAATGTTGTGTATGAACCAGTGAAAAAGAGCAGGCTG
ATTATTTTTAAACTGCTATCTTCATAAATTGATTTTCATGTCTTAATTAC
AAATCTGTTCCAGACCATATTTGCGATGGGCATGGCAGCCTCCGTTGGTG
GTCAAAAAGGAcacttttcaatttaaaaggCTGTTTTAAGGAGG
Run BLAST on NCBI

protein sequence of TCONS_00054634-protein

>TCONS_00054634-protein ID=TCONS_00054634-protein|Name=TCONS_00054634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
KHFHVLKMRKVTNMANLSGHRQSFLPSNLTNCQDENINWHFDKDIGWFGF
DFSGRYYTFHFDDGKMYPDGNERPIEAPADFDWNSIFSRIKVYHFDKQKE
QLHSSYVNLLSRDYSKVKSSCYDPVNMRWFEIVKSSKNDKEKTYTIYSGC
IRSLLGTGSSITIYTNNVREYNTINLTYPKNMRITFDFEFVRTTSGNFLI
LMSCYPDKGRFTMDLIQYDDEKISHFRRFSFAHDHGSDEEGEEAGMDFYN
MGFDLESNN
Run BLAST on NCBI

transcript from alignment at scaffold_243:388835..391147-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054634 ID=TCONS_00054634|Name=TCONS_00054634|organism=Clytia hemisphaerica|type=transcript|length=2313bp|location=Sequence derived from alignment at scaffold_243:388835..391147- (Clytia hemisphaerica)
AAGCACTTTCATGTACTGAAGATGAGAAAAGGTCTGATCATTAGAATCAC
TGAAATTAATATATATGGGGTTAATAGGTTAACATTTATATGAATGCTTT
TTATCCAAGCCCCTGTGAGATAAAAGGGAGATAAAACGCTGTGTTTTCAG
TCAATGTTTCAGTTACCTTGTTTATTTAAACTGGTTCATCCAGCATCCAC
CAGTTTGTGTTTTGACAATTTCTTATTTAAAACAGTTGATTTATATTTAG
TCACCAATATGGCAAATCTATCTGGTCATCGGCAGTCTTTTCTCCCATCT
AATTTAACAAATTGTCAAGATGAAAACATTAATTGGCATTTTGATAAAGA
TATTGGTTGGTTTGGCTTTGACTTTTCTGGGAGATACTACACATTCCATT
TTGATGATGGGAAGATGTATCCTGATGGCAATGAACGTCCTATAGAAGCT
CCAGCCGATTTTGATTGGAACAGCATTTTTTCTAGAATCAAAGTGTATCA
TTTTGATAAACAAAAAGAACAACTTCATTCTAGTTACGTCAATCTATTGA
GCAGAGATTACTCTAAAGTAAAAAGTTCATGCTATGATCCTGTTAACATG
AGATGGTTTGAAATTGTCAAATCTTCAAAAAATGATAAGGAGAAAACTTA
TACAATTTATAGTGGCTGTATTAGAAGCTTGCTTGGGACTGGTTCCTCTA
TAACAATTTATACCAACAATGTCAGGGAATATAACACAATCAATCTAACT
TACCCAAAGAATATGAGAATCACCTTCGATTTTGAATTTGTTAGAACTAC
CTCTGGAAATTTCCTCATTTTGATGTCCTGTTATCCAGATAAAGGAAGGT
TCACCATGGATTTGATACAGTACGATGATGAAAAGATTTCCCACTTCCGA
CGTTTTTCTTTTGCCCATGATCATGGCTCTGATGAAGAAGGTGAAGAAGC
AGGCATGGATTTTTATAACATGGGTTTTGACTTAGAATCAAACAATTGAA
AAAGGGAGCAAGCCTTGGAAGGTTTCTGCTTTTGATTTCACTGGTAATGA
ATTGTTTACAGTTGAAATCCCTGAACAACTTTCAAAAGTTATATCCTACA
TGTCCCTCATTTCAGGCTCACTATTTTTTATGGTTTCAAGAGATGTGAAT
TTTGGTCTAATGAGTATTAGTACTAATGGAGTGAAAATTTGTAAACAATT
CAAATTAGATAAAGCTCCCCATGGTGAAATGTTAACAAACTCGTATAAAG
TATTGAAGCGTTTTGACAAGCATTTTCTTTGTGTCAGCAGCAGGAGTGTA
TGGGATGATTGCTCCTACCATCTTTTTGATACGGAAACAGAAAAATTGGT
TTACAAACATTCTACTGATGCCACATCTATAATTTATTGGGAGTTTAACT
GGAACTTACAAGAATTTGCTTGTTGCACAAATGAGAATATTTTTAAGGTA
TTCACCACTGGATACAAATCCGATAGCTTGAAGGATAAAGCTTGACAAGC
TTGTTTGGAATCTTACAATAAAGATCAGTTAAATGCAAACCTTCCCTCTT
CCCTTGTGAAGTATATTGATGCTTAATTACACACTGTATGATGAATTCAT
TTGTTAGAACCTGCACTATGTTCCTATTTTTATAGAATATTACACTTTGT
AATATATTTGACATCTTCTGTTTATTTTTATTCACAATATTTAAACACTG
ACTGGTAAAATATTGACTTCCGTTTCTCTCCTCCTCTCTATAAGGAATAT
TTTGTTTAAAATATAGAAAATTTTCATTTTATTACAGATCCATTTACCTG
ATGATCCTGTAAGCGTGAAACAGACTGTAGTATGTTTTAATTTTTGTGAG
AACAAAATTTTTGATTTTATTACATGATTAAAATGATTACTACAAGTCTC
TTCTTGTCATTCTAACCTCCTTCTTACCTTATATATACGCCCAAATATTA
AGCTCACCTTTTTATTATGGTTTTCTTTTTGTGTTTGTTTTTTCGCTACA
TTAATATTGAAGGAAACCTGTTTTTAAGACTAGCTGTTTATATTTTTTGA
AATTTATCAATAAAGACATTTATTTTGTTGTTTTTCTTGCCGTAACTGAA
AACAGACATTTTTTAATATTTTCTTGTAGATTCAATGTTGTGTATGAACC
AGTGAAAAAGAGCAGGCTGATTATTTTTAAACTGCTATCTTCATAAATTG
ATTTTCATGTCTTAATTACAAATCTGTTCCAGACCATATTTGCGATGGGC
ATGGCAGCCTCCGTTGGTGGTCAAAAAGGACACTTTTCAATTTAAAAGGC
TGTTTTAAGGAGG

Coding sequence (CDS) from alignment at scaffold_243:388835..391147-

>TCONS_00054634 ID=TCONS_00054634|Name=TCONS_00054634|organism=Clytia hemisphaerica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_243:388835..391147- (Clytia hemisphaerica)
TCACCAATATGGCAAATCTATCTGGTCATCGGCAGTCTTTTCTCCCATCT
AATTTAACAAATTGTCAAGATGAAAACATTAATTGGCATTTTGATAAAGA
TATTGGTTGGTTTGGCTTTGACTTTTCTGGGAGATACTACACATTCCATT
TTGATGATGGGAAGATGTATCCTGATGGCAATGAACGTCCTATAGAAGCT
CCAGCCGATTTTGATTGGAACAGCATTTTTTCTAGAATCAAAGTGTATCA
TTTTGATAAACAAAAAGAACAACTTCATTCTAGTTACGTCAATCTATTGA
GCAGAGATTACTCTAAAGTAAAAAGTTCATGCTATGATCCTGTTAACATG
AGATGGTTTGAAATTGTCAAATCTTCAAAAAATGATAAGGAGAAAACTTA
TACAATTTATAGTGGCTGTATTAGAAGCTTGCTTGGGACTGGTTCCTCTA
TAACAATTTATACCAACAATGTCAGGGAATATAACACAATCAATCTAACT
TACCCAAAGAATATGAGAATCACCTTCGATTTTGAATTTGTTAGAACTAC
CTCTGGAAATTTCCTCATTTTGATGTCCTGTTATCCAGATAAAGGAAGGT
TCACCATGGATTTGATACAGTACGATGATGAAAAGATTTCCCACTTCCGA
CGTTTTTCTTTTGCCCATGATCATGGCTCTGATGAAGAAGGTGAAGAAGC
AGGCATGGATTTTTATAACATGGGTTTTGACTTAGAATCAAACAATTGAA
AGCACTTTCATGTACTGAAGATGAGAAAAGTCACCAATATGGCAAATCTA
TCTGGTCATCGGCAGTCTTTTCTCCCATCTAATTTAACAAATTGTCAAGA
TGAAAACATTAATTGGCATTTTGATAAAGATATTGGTTGGTTTGGCTTTG
ACTTTTCTGGGAGATACTACACATTCCATTTTGATGATGGGAAGATGTAT
CCTGATGGCAATGAACGTCCTATAGAAGCTCCAGCCGATTTTGATTGGAA
CAGCATTTTTTCTAGAATCAAAGTGTATCATTTTGATAAACAAAAAGAAC
AACTTCATTCTAGTTACGTCAATCTATTGAGCAGAGATTACTCTAAAGTA
AAAAGTTCATGCTATGATCCTGTTAACATGAGATGGTTTGAAATTGTCAA
ATCTTCAAAAAATGATAAGGAGAAAACTTATACAATTTATAGTGGCTGTA
TTAGAAGCTTGCTTGGGACTGGTTCCTCTATAACAATTTATACCAACAAT
GTCAGGGAATATAACACAATCAATCTAACTTACCCAAAGAATATGAGAAT
CACCTTCGATTTTGAATTTGTTAGAACTACCTCTGGAAATTTCCTCATTT
TGATGTCCTGTTATCCAGATAAAGGAAGGTTCACCATGGATTTGATACAG
TACGATGATGAAAAGATTTCCCACTTCCGACGTTTTTCTTTTGCCCATGA
TCATGGCTCTGATGAAGAAGGTGAAGAAGCAGGCATGGATTTTTATAACA
TGGGTTTTGACTTAGAATCAAACAATTGAAAGCACTTTCATGTACTGAAG
ATGAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034418XLOC_034418Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054634-proteinTCONS_00054634-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054634-exon-scaffold_243-1575043694:391117..391147TCONS_00054634-exon-scaffold_243-1575043694:391117..391147Clytia hemisphaericaexon
TCONS_00054634-exon-scaffold_243-1575043694:388835..390897TCONS_00054634-exon-scaffold_243-1575043694:388835..390897Clytia hemisphaericaexon
TCONS_00054634-exon-scaffold_243-1510915933:391117..391147TCONS_00054634-exon-scaffold_243-1510915933:391117..391147Clytia hemisphaericaexon
TCONS_00054634-exon-scaffold_243-1510915933:388835..390897TCONS_00054634-exon-scaffold_243-1510915933:388835..390897Clytia hemisphaericaexon
TCONS_00054634-exon-scaffold_243-1491911889:391117..391147TCONS_00054634-exon-scaffold_243-1491911889:391117..391147Clytia hemisphaericaexon
TCONS_00054634-exon-scaffold_243-1491911889:388835..390897TCONS_00054634-exon-scaffold_243-1491911889:388835..390897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:388835..391147 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.1967	31.6137	63.4935	61.4373	5.9137	3.81865	5.65242	4.68455	4.19039	3.48096	4.38007	3.7584	3.09327	2.90636	4.01058	4.1167	4.82813	5.45056	2.27073	2.33123	4.74789	3.98205	15.4247	14.5565	4.04136	6.08689	2.77696	2.37963	7.1572	6.88363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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