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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054635 ID=TCONS_00054635|Name=TCONS_00054635|organism=Clytia hemisphaerica|type=transcript|length=2277bp
TTCCATGAGCTTTCCTGTAATGAAGACTTCTTGAATTGATTACTTtaaag
aaatagaaagaaaaCTAAGAATTTGCCCCTGAGAATATATGTGCATTGTT
TTATTCTTTTCAATCGCAGATATACTCATGAAAgtgcaaaatattttgtc
atcCAATCACTGTGCCATCAACTGTTTTGATATCCAATCAAGATAGTGCC
ATATAATTGTGAATTCACCAATATGGCAAATCTATCTGGTCATCGGCAGT
CTTTTCTCCCATCTAATTTAACAAATTGTCAAGATGAAAACATTAATTGG
CATTTTGATAAAGATATTGGTTGGTTTGGCTTTGACTTTTCTGGGAGATA
CTACACATTCCATTTTGATGATGGGAAGATGTATCCTGATGGCAATGAAC
GTCCTATAGAAGCTCCAGCCGATTTTGATTGGAACAGCATTTTTTCTAGA
ATCAAAGTGTATCattttgataaacaaaaagaacaacttCATTCTAGTTA
CGTCAATCTATTGAGCAGAGATTACTCTAAAGTAAAAAGTTCATGCTATG
ATCCTGTTAACATGAGATGGTTTGAAATTgtcaaatcttcaaaaaatgat
aAGGAGAAAACTTATACAATTTATAGTGGCTGTATTAGAAGCTTGCTTGG
GACTGGTTCCTCTATAACAATTTATACCAACAATGTCAGGGAATATAACA
CAATCAATCTAACTTACCCAAAGAATATGAGAATCACCTTCGATTTTGAA
TTTGTTAGAACTACCTCTGGAAATTTCCTCATTTTGATGTCCTGTTATCC
AGATAAAGGAAGGTTCACCATGGATTTGATACAGTACGATGATGAAAAGA
TTTCCCACTTCCGACGTTTTTCTTTTGCCCATGATCATGGCTCTGATGAA
GAAGGTGAAGAAGCAGGCATGGATTTTTATAACATGGGTTTTGACTTAGA
ATCAAACAATTGAAAAAGGGAGCAAGCCTTGGAAGGTTTCTGCTTTTGAT
TTCACTGGTAATGAATTGTTTACAGTTGAAATCCCTGAACAACTTTCAAA
AGTTATATCCTACATGTCCCTCATTTCAGGCTCACTATTTTTTATGGTTT
CAAGAGATGTGAATTTTGGTCTAATGAGTATTAGTACTAATGGagtgaaa
atttgtaaacaattcAAATTAGATAAAGCTCCCCATGGTGAAATGTTAAC
AAACTCGTATAAAGTATTGAAGCGTTTTGACAAGCATTTTCTTTGTGTCA
GCAGCAGGAGTGTATGGGATGATTGCTCCTACCATCTTTTTGATACGGAA
ACAGAAAAATTGGTTTACAAACATTCTACTGATGCCACATCTATAATTTA
TTGGGAGTTTAACTGGAACTTACAAGAATTTGCTTGTTGCACAAATGAGA
ATATTTTTAAGGTATTCACCACTGGATACAAATCCGATAGCTTGAAGGAT
AAAGCTTGACAAGCTTGTTTGGAATCTTACAATAAAGATCAGTTAAATGC
AAACCTTCCCTCTTCCCTTGTGAAGTATATTGATGCTTAATTACACACTG
TATGATGAATTCATTTGTTAGAACCTGCACTATGTTCCTATTTTTATAGA
ATATTACACTTTGTAATATATTTGACATcttctgtttatttttattcaca
ATATTTAAACACTGACTGGTAAAATATTGACTTCCGTTTCTCTCCTCCTC
TCTATAAGgaatattttgtttaaaatatagaaaattttcattttattaca
gATCCATTTACCTGATGATCCTGTAAGCGTGAAACAGACTGtagtatgtt
ttaatttttgtgagaacaaaatttttgattttattacatGATTAAAATGA
TTACTACAAGTCTCTTCTTGTCATTCTAACCTCCTTCTTACCTTATATAT
ACGCCCAAATATTAAGCTCACCTTTTTATTATGGTTttctttttgtgttt
gttttttcgCTACATTAATATTGAAGGAAACCTGTTTTTAAGACTAgctg
tttatattttttgaaatttatcaataaagacatttattttgttgtttttc
ttgccGTAACTGAAAACAgacattttttaatattttcttgtaGATTCAAT
GTTGTGTATGAACCAGTGAAAAAGAGCAGGCTGATTATTTTTAAACTGCT
ATCTTCATAAATTGATTTTCATGTCTTAATTACAAATCTGTTCCAGACCA
TATTTGCGATGGGCATGGCAGCCTCCGTTGGTGGTCAAAAAGGAcacttt
tcaatttaaaaggCTGTTTTAAGGAGG Run BLAST on NCBI transcript from alignment at scaffold_243:388835..391385- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054635 ID=TCONS_00054635|Name=TCONS_00054635|organism=Clytia hemisphaerica|type=transcript|length=2551bp|location=Sequence derived from alignment at scaffold_243:388835..391385- (Clytia hemisphaerica)
TTCCATGAGCTTTCCTGTAATGAAGACTTCTTGAATTGATTACTTTAAAG
AAATAGAAAGAAAACTAAGAATTTGCCCCTGAGAATATATGTGCATTGTT
TTATTCTTTTCAATCGCAGATATACTCATGAAAGTGCAAAATATTTTGTC
ATCCAATCACTGTGCCATCAACTGTTTTGATATCCAATCAAGATAGTGCC
ATATAATTGTGAATGTAAGATCTATTCAACTGAAAGTTAAGCACTTTCAT
GTACTGAAGATGAGAAAAGGTCTGATCATTAGAATCACTGAAATTAATAT
ATATGGGGTTAATAGGTTAACATTTATATGAATGCTTTTTATCCAAGCCC
CTGTGAGATAAAAGGGAGATAAAACGCTGTGTTTTCAGTCAATGTTTCAG
TTACCTTGTTTATTTAAACTGGTTCATCCAGCATCCACCAGTTTGTGTTT
TGACAATTTCTTATTTAAAACAGTTGATTTATATTTAGTCACCAATATGG
CAAATCTATCTGGTCATCGGCAGTCTTTTCTCCCATCTAATTTAACAAAT
TGTCAAGATGAAAACATTAATTGGCATTTTGATAAAGATATTGGTTGGTT
TGGCTTTGACTTTTCTGGGAGATACTACACATTCCATTTTGATGATGGGA
AGATGTATCCTGATGGCAATGAACGTCCTATAGAAGCTCCAGCCGATTTT
GATTGGAACAGCATTTTTTCTAGAATCAAAGTGTATCATTTTGATAAACA
AAAAGAACAACTTCATTCTAGTTACGTCAATCTATTGAGCAGAGATTACT
CTAAAGTAAAAAGTTCATGCTATGATCCTGTTAACATGAGATGGTTTGAA
ATTGTCAAATCTTCAAAAAATGATAAGGAGAAAACTTATACAATTTATAG
TGGCTGTATTAGAAGCTTGCTTGGGACTGGTTCCTCTATAACAATTTATA
CCAACAATGTCAGGGAATATAACACAATCAATCTAACTTACCCAAAGAAT
ATGAGAATCACCTTCGATTTTGAATTTGTTAGAACTACCTCTGGAAATTT
CCTCATTTTGATGTCCTGTTATCCAGATAAAGGAAGGTTCACCATGGATT
TGATACAGTACGATGATGAAAAGATTTCCCACTTCCGACGTTTTTCTTTT
GCCCATGATCATGGCTCTGATGAAGAAGGTGAAGAAGCAGGCATGGATTT
TTATAACATGGGTTTTGACTTAGAATCAAACAATTGAAAAAGGGAGCAAG
CCTTGGAAGGTTTCTGCTTTTGATTTCACTGGTAATGAATTGTTTACAGT
TGAAATCCCTGAACAACTTTCAAAAGTTATATCCTACATGTCCCTCATTT
CAGGCTCACTATTTTTTATGGTTTCAAGAGATGTGAATTTTGGTCTAATG
AGTATTAGTACTAATGGAGTGAAAATTTGTAAACAATTCAAATTAGATAA
AGCTCCCCATGGTGAAATGTTAACAAACTCGTATAAAGTATTGAAGCGTT
TTGACAAGCATTTTCTTTGTGTCAGCAGCAGGAGTGTATGGGATGATTGC
TCCTACCATCTTTTTGATACGGAAACAGAAAAATTGGTTTACAAACATTC
TACTGATGCCACATCTATAATTTATTGGGAGTTTAACTGGAACTTACAAG
AATTTGCTTGTTGCACAAATGAGAATATTTTTAAGGTATTCACCACTGGA
TACAAATCCGATAGCTTGAAGGATAAAGCTTGACAAGCTTGTTTGGAATC
TTACAATAAAGATCAGTTAAATGCAAACCTTCCCTCTTCCCTTGTGAAGT
ATATTGATGCTTAATTACACACTGTATGATGAATTCATTTGTTAGAACCT
GCACTATGTTCCTATTTTTATAGAATATTACACTTTGTAATATATTTGAC
ATCTTCTGTTTATTTTTATTCACAATATTTAAACACTGACTGGTAAAATA
TTGACTTCCGTTTCTCTCCTCCTCTCTATAAGGAATATTTTGTTTAAAAT
ATAGAAAATTTTCATTTTATTACAGATCCATTTACCTGATGATCCTGTAA
GCGTGAAACAGACTGTAGTATGTTTTAATTTTTGTGAGAACAAAATTTTT
GATTTTATTACATGATTAAAATGATTACTACAAGTCTCTTCTTGTCATTC
TAACCTCCTTCTTACCTTATATATACGCCCAAATATTAAGCTCACCTTTT
TATTATGGTTTTCTTTTTGTGTTTGTTTTTTCGCTACATTAATATTGAAG
GAAACCTGTTTTTAAGACTAGCTGTTTATATTTTTTGAAATTTATCAATA
AAGACATTTATTTTGTTGTTTTTCTTGCCGTAACTGAAAACAGACATTTT
TTAATATTTTCTTGTAGATTCAATGTTGTGTATGAACCAGTGAAAAAGAG
CAGGCTGATTATTTTTAAACTGCTATCTTCATAAATTGATTTTCATGTCT
TAATTACAAATCTGTTCCAGACCATATTTGCGATGGGCATGGCAGCCTCC
GTTGGTGGTCAAAAAGGACACTTTTCAATTTAAAAGGCTGTTTTAAGGAG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054635-exon-scaffold_243-1575043694:391172..391385 | TCONS_00054635-exon-scaffold_243-1575043694:391172..391385 | Clytia hemisphaerica | exon |
| TCONS_00054635-exon-scaffold_243-1575043694:388835..390897 | TCONS_00054635-exon-scaffold_243-1575043694:388835..390897 | Clytia hemisphaerica | exon |
| TCONS_00054635-exon-scaffold_243-1510915933:391172..391385 | TCONS_00054635-exon-scaffold_243-1510915933:391172..391385 | Clytia hemisphaerica | exon |
| TCONS_00054635-exon-scaffold_243-1510915933:388835..390897 | TCONS_00054635-exon-scaffold_243-1510915933:388835..390897 | Clytia hemisphaerica | exon |
| TCONS_00054635-exon-scaffold_243-1491911889:391172..391385 | TCONS_00054635-exon-scaffold_243-1491911889:391172..391385 | Clytia hemisphaerica | exon |
| TCONS_00054635-exon-scaffold_243-1491911889:388835..390897 | TCONS_00054635-exon-scaffold_243-1491911889:388835..390897 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_243 | supercontig | scaffold_243:388835..391385 - |
Blast
The following BLAST results are available for this feature:
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