TCONS_00054636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054636
Unique NameTCONS_00054636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054636 ID=TCONS_00054636|Name=TCONS_00054636|organism=Clytia hemisphaerica|type=transcript|length=2669bp
CAAGCagtcaacaaaagaaatcaatgaaattagATCAAAGAGAAAAGCTG
CACACACaagcaaaaagaattatttGCCAATCTTGTGGATTTGTAAAACT
CAAAATCATGTTAGCAATTTCCATGAGCTTTCCTGTAATGAAGACTTCTT
GAATTGATTACTTtaaagaaatagaaagaaaaCTAAGAATTTGCCCCTGA
GAATATATGTGCATTGTTTTATTCTTTTCAATCGCAGATATACTCATGAA
AgtgcaaaatattttgtcatcCAATCACTGTGCCATCAACTGTTTTGATA
TCCAATCAAGATAGTGCCATATAATTGTGAATGTAAGATCTATTCAACTG
AAAGTTAAGCACTTTCATGTACTGAAGATGAGAAAAGGTCTGATCATTAG
AATCACTGAAATTAATATATATGGGGTTAATAGGTTAACATTTATATGAA
TGCTTTTTATCCAAGCCCCTGTGAGATAAAAGGGAGATAAAACGCTGTGT
TTTCAGTCAATGTTTCAGTTACCTTGTTTATTTAAACTGGTTCATCCAGC
ATCCACCAGTTTGTGTTTTGACaatttcttatttaaaacagttgatttat
atttagTCACCAATATGGCAAATCTATCTGGTCATCGGCAGTCTTTTCTC
CCATCTAATTTAACAAATTGTCAAGATGAAAACATTAATTGGCATTTTGA
TAAAGATATTGGTTGGTTTGGCTTTGACTTTTCTGGGAGATACTACACAT
TCCATTTTGATGATGGGAAGATGTATCCTGATGGCAATGAACGTCCTATA
GAAGCTCCAGCCGATTTTGATTGGAACAGCATTTTTTCTAGAATCAAAGT
GTATCattttgataaacaaaaagaacaacttCATTCTAGTTACGTCAATC
TATTGAGCAGAGATTACTCTAAAGTAAAAAGTTCATGCTATGATCCTGTT
AACATGAGATGGTTTGAAATTgtcaaatcttcaaaaaatgataAGGAGAA
AACTTATACAATTTATAGTGGCTGTATTAGAAGCTTGCTTGGGACTGGTT
CCTCTATAACAATTTATACCAACAATGTCAGGGAATATAACACAATCAAT
CTAACTTACCCAAAGAATATGAGAATCACCTTCGATTTTGAATTTGTTAG
AACTACCTCTGGAAATTTCCTCATTTTGATGTCCTGTTATCCAGATAAAG
GAAGGTTCACCATGGATTTGATACAGTACGATGATGAAAAGATTTCCCAC
TTCCGACGTTTTTCTTTTGCCCATGATCATGGCTCTGATGAAGAAGGTGA
AGAAGCAGGCATGGATTTTTATAACATGGGTTTTGACTTAGAATCAAACA
ATTGAAAAAGGGAGCAAGCCTTGGAAGGTTTCTGCTTTTGATTTCACTGG
TAATGAATTGTTTACAGTTGAAATCCCTGAACAACTTTCAAAAGTTATAT
CCTACATGTCCCTCATTTCAGGCTCACTATTTTTTATGGTTTCAAGAGAT
GTGAATTTTGGTCTAATGAGTATTAGTACTAATGGagtgaaaatttgtaa
acaattcAAATTAGATAAAGCTCCCCATGGTGAAATGTTAACAAACTCGT
ATAAAGTATTGAAGCGTTTTGACAAGCATTTTCTTTGTGTCAGCAGCAGG
AGTGTATGGGATGATTGCTCCTACCATCTTTTTGATACGGAAACAGAAAA
ATTGGTTTACAAACATTCTACTGATGCCACATCTATAATTTATTGGGAGT
TTAACTGGAACTTACAAGAATTTGCTTGTTGCACAAATGAGAATATTTTT
AAGGTATTCACCACTGGATACAAATCCGATAGCTTGAAGGATAAAGCTTG
ACAAGCTTGTTTGGAATCTTACAATAAAGATCAGTTAAATGCAAACCTTC
CCTCTTCCCTTGTGAAGTATATTGATGCTTAATTACACACTGTATGATGA
ATTCATTTGTTAGAACCTGCACTATGTTCCTATTTTTATAGAATATTACA
CTTTGTAATATATTTGACATcttctgtttatttttattcacaATATTTAA
ACACTGACTGGTAAAATATTGACTTCCGTTTCTCTCCTCCTCTCTATAAG
gaatattttgtttaaaatatagaaaattttcattttattacagATCCATT
TACCTGATGATCCTGTAAGCGTGAAACAGACTGtagtatgttttaatttt
tgtgagaacaaaatttttgattttattacatGATTAAAATGATTACTACA
AGTCTCTTCTTGTCATTCTAACCTCCTTCTTACCTTATATATACGCCCAA
ATATTAAGCTCACCTTTTTATTATGGTTttctttttgtgtttgttttttc
gCTACATTAATATTGAAGGAAACCTGTTTTTAAGACTAgctgtttatatt
ttttgaaatttatcaataaagacatttattttgttgtttttcttgccGTA
ACTGAAAACAgacattttttaatattttcttgtaGATTCAATGTTGTGTA
TGAACCAGTGAAAAAGAGCAGGCTGATTATTTTTAAACTGCTATCTTCAT
AAATTGATTTTCATGTCTTAATTACAAATCTGTTCCAGACCATATTTGCG
ATGGGCATGGCAGCCTCCGTTGGTGGTCAAAAAGGAcacttttcaattta
aaaggCTGTTTTAAGGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_243:388835..391503-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054636 ID=TCONS_00054636|Name=TCONS_00054636|organism=Clytia hemisphaerica|type=transcript|length=2669bp|location=Sequence derived from alignment at scaffold_243:388835..391503- (Clytia hemisphaerica)
CAAGCAGTCAACAAAAGAAATCAATGAAATTAGATCAAAGAGAAAAGCTG
CACACACAAGCAAAAAGAATTATTTGCCAATCTTGTGGATTTGTAAAACT
CAAAATCATGTTAGCAATTTCCATGAGCTTTCCTGTAATGAAGACTTCTT
GAATTGATTACTTTAAAGAAATAGAAAGAAAACTAAGAATTTGCCCCTGA
GAATATATGTGCATTGTTTTATTCTTTTCAATCGCAGATATACTCATGAA
AGTGCAAAATATTTTGTCATCCAATCACTGTGCCATCAACTGTTTTGATA
TCCAATCAAGATAGTGCCATATAATTGTGAATGTAAGATCTATTCAACTG
AAAGTTAAGCACTTTCATGTACTGAAGATGAGAAAAGGTCTGATCATTAG
AATCACTGAAATTAATATATATGGGGTTAATAGGTTAACATTTATATGAA
TGCTTTTTATCCAAGCCCCTGTGAGATAAAAGGGAGATAAAACGCTGTGT
TTTCAGTCAATGTTTCAGTTACCTTGTTTATTTAAACTGGTTCATCCAGC
ATCCACCAGTTTGTGTTTTGACAATTTCTTATTTAAAACAGTTGATTTAT
ATTTAGTCACCAATATGGCAAATCTATCTGGTCATCGGCAGTCTTTTCTC
CCATCTAATTTAACAAATTGTCAAGATGAAAACATTAATTGGCATTTTGA
TAAAGATATTGGTTGGTTTGGCTTTGACTTTTCTGGGAGATACTACACAT
TCCATTTTGATGATGGGAAGATGTATCCTGATGGCAATGAACGTCCTATA
GAAGCTCCAGCCGATTTTGATTGGAACAGCATTTTTTCTAGAATCAAAGT
GTATCATTTTGATAAACAAAAAGAACAACTTCATTCTAGTTACGTCAATC
TATTGAGCAGAGATTACTCTAAAGTAAAAAGTTCATGCTATGATCCTGTT
AACATGAGATGGTTTGAAATTGTCAAATCTTCAAAAAATGATAAGGAGAA
AACTTATACAATTTATAGTGGCTGTATTAGAAGCTTGCTTGGGACTGGTT
CCTCTATAACAATTTATACCAACAATGTCAGGGAATATAACACAATCAAT
CTAACTTACCCAAAGAATATGAGAATCACCTTCGATTTTGAATTTGTTAG
AACTACCTCTGGAAATTTCCTCATTTTGATGTCCTGTTATCCAGATAAAG
GAAGGTTCACCATGGATTTGATACAGTACGATGATGAAAAGATTTCCCAC
TTCCGACGTTTTTCTTTTGCCCATGATCATGGCTCTGATGAAGAAGGTGA
AGAAGCAGGCATGGATTTTTATAACATGGGTTTTGACTTAGAATCAAACA
ATTGAAAAAGGGAGCAAGCCTTGGAAGGTTTCTGCTTTTGATTTCACTGG
TAATGAATTGTTTACAGTTGAAATCCCTGAACAACTTTCAAAAGTTATAT
CCTACATGTCCCTCATTTCAGGCTCACTATTTTTTATGGTTTCAAGAGAT
GTGAATTTTGGTCTAATGAGTATTAGTACTAATGGAGTGAAAATTTGTAA
ACAATTCAAATTAGATAAAGCTCCCCATGGTGAAATGTTAACAAACTCGT
ATAAAGTATTGAAGCGTTTTGACAAGCATTTTCTTTGTGTCAGCAGCAGG
AGTGTATGGGATGATTGCTCCTACCATCTTTTTGATACGGAAACAGAAAA
ATTGGTTTACAAACATTCTACTGATGCCACATCTATAATTTATTGGGAGT
TTAACTGGAACTTACAAGAATTTGCTTGTTGCACAAATGAGAATATTTTT
AAGGTATTCACCACTGGATACAAATCCGATAGCTTGAAGGATAAAGCTTG
ACAAGCTTGTTTGGAATCTTACAATAAAGATCAGTTAAATGCAAACCTTC
CCTCTTCCCTTGTGAAGTATATTGATGCTTAATTACACACTGTATGATGA
ATTCATTTGTTAGAACCTGCACTATGTTCCTATTTTTATAGAATATTACA
CTTTGTAATATATTTGACATCTTCTGTTTATTTTTATTCACAATATTTAA
ACACTGACTGGTAAAATATTGACTTCCGTTTCTCTCCTCCTCTCTATAAG
GAATATTTTGTTTAAAATATAGAAAATTTTCATTTTATTACAGATCCATT
TACCTGATGATCCTGTAAGCGTGAAACAGACTGTAGTATGTTTTAATTTT
TGTGAGAACAAAATTTTTGATTTTATTACATGATTAAAATGATTACTACA
AGTCTCTTCTTGTCATTCTAACCTCCTTCTTACCTTATATATACGCCCAA
ATATTAAGCTCACCTTTTTATTATGGTTTTCTTTTTGTGTTTGTTTTTTC
GCTACATTAATATTGAAGGAAACCTGTTTTTAAGACTAGCTGTTTATATT
TTTTGAAATTTATCAATAAAGACATTTATTTTGTTGTTTTTCTTGCCGTA
ACTGAAAACAGACATTTTTTAATATTTTCTTGTAGATTCAATGTTGTGTA
TGAACCAGTGAAAAAGAGCAGGCTGATTATTTTTAAACTGCTATCTTCAT
AAATTGATTTTCATGTCTTAATTACAAATCTGTTCCAGACCATATTTGCG
ATGGGCATGGCAGCCTCCGTTGGTGGTCAAAAAGGACACTTTTCAATTTA
AAAGGCTGTTTTAAGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034418XLOC_034418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054636-exon-scaffold_243-1575043694:388835..391503TCONS_00054636-exon-scaffold_243-1575043694:388835..391503Clytia hemisphaericaexon
TCONS_00054636-exon-scaffold_243-1510915933:388835..391503TCONS_00054636-exon-scaffold_243-1510915933:388835..391503Clytia hemisphaericaexon
TCONS_00054636-exon-scaffold_243-1491911889:388835..391503TCONS_00054636-exon-scaffold_243-1491911889:388835..391503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:388835..391503 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52748	2.93209	2.36795	3.65222	1.9528	1.35024	1.27994	2.72332	1.45583	1.20142	2.3129	1.32702	1.16902	0.812625	0.955942	0.87056	1.34551	1.23866	0.5903	1.13341	2.38563	2.62102	2.46758	1.50948	0.874536	2.25478	0.387495	0.132442	0.470377	0.614074
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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