TCONS_00054639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054639
Unique NameTCONS_00054639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054639 ID=TCONS_00054639|Name=TCONS_00054639|organism=Clytia hemisphaerica|type=transcript|length=1899bp
ttttcagactaATCACTACTAAATCAACTAACAATTAATAAAACTAAGGA
GAAGCAGAAaatgaaatttgcaaaaattatATAACTTAACTTGCAAGATT
GATCAATAAAATCAAGATAATTTAATGCAGAAGAACTCACCATGGGCGGT
CAGACGACGATCGTGGAACCCATCTTATTTGCTTACATGTTCAACAATTT
CATTCTATCACCCGTCGAACAACAACTAGTCTTCAGAAAAACATGCTTTC
AAAACTTCAACAAATCATACTGTCAAATTCTATTCGAATCGAAAAACGAA
ACTTATAAGGACGATCAGAATTTTTTACAAGAGAAAACTTCACAATGGGA
CATTTACTCTAATTTGGTTCAAATGTTACCAGCTATTATATCCACGCTTG
TTTACACCAGTTGGTCAAATAGAATCGGTCGCAAACGGGTTATGATTCTA
CCCATGATTGGAGGGACAATACTAACAATAACACTTATCTTAAACTCATA
CTTCGAGGAATGGCCTTTAGAGTTGTTACTGATTGGTTCTTTCTTAGATG
GTTGCTTTGGTCAATTTGTGGCAATCATAGCATCCATTTATTCATACGCT
GCAGATGTGACGTCCATTGAAGGACGTACTAAACGAACAGTTATTCTTGA
ATCTATGATGTTTCTTGGTGGTGTCGTTTCAAGTGCAATCAGTGGTATCT
TATTACAGAAATATGGTTTCATACCAACTTTCCTACTGGTATTAGCAATG
TTTGCATTTCAAATGATTTATTGGTGTTTTTTACAAGAATCATATCCACC
AAGGCCTGACCAACCGAAGATTTCATTTTGTCAGATCTTGAAAGGTGAAG
CATTGACAGGTGCCATTCGTGTTGTGTTTAAAAAGAGGAATGGTAACAAA
CGAAGAACCATCCTTCTGTTGTACGTTGTTCTATTGCTCTTCACTTCGGT
GTACACTGGATACGGTGATGTGAGTGTTCTATACATCCTACATCCACCAA
TCAATTTCTCTTCTGCCAATATTGGTTACATGTATGCACAGTTCAATGGT
CTCAAATTTATTGGTGCTTCATTCATCAACTATGTCTTTTTGCACAAATT
GGGTATTCCTGACATTCGAATATTGACCATTTTTCCGTTGGCTTTTATTG
GTTTTTGTTTAACTTTGGCGTTTACAACGACGGCTTGGCAAGTCTTTGCA
TCTGCAGCATGGGGACTTGGGCTGGGTGTTGGCCCAGGTGCGATTCGTGG
AAGGTTGTCGAAAATCGTTGGAAGAAGTGAACAAGgtcaTTTATTTGCAT
TTATTGCATCAACGGAAATCGCCATAGCTTTTGTAGTAAGCATTGCGTTT
AATGCAATTTACAAAGCAACAGTATCCATCTCAACGAAGAttatttgata
cattttatcaGCGCTGTCACTTGTCTCCTTCATTATTGTTATTGGATTGA
TCATCAACGGAGACGACGAAGAAGATTACGAAGAATTgaatgaagaaaat
gaaaatgaagatgatgaGAATTCAAAACATGACTCGCTCAACAAAACTGT
ATGAAAATATCCGCTGACGAGATACTGCACGTCTTTTGAAACATATATCA
TTTTAATACTATTGTTTGTCCCcgaaaaataattataaaaaattttatAC
CTAATTTTTATGATCAAgctatttcttttctaaaaaagtgtttaattACT
TTGCCTTGTAGCTTGTAACTAAATATCTATTTAATGTAACAAATAAGTTT
CTTCTCATTGTAAATAATTTCATACACAGTAAAATTAATGCTTTTACAAG
TTTCTATTTCCATGAATTGTGTCCCGCTTTTCTGTTCGTATTGGCGTACC
TTAATTCTTGTTTAGTACTAGTAGTGGTTCTTCACTTTCACACGTGAGA
Run BLAST on NCBI

protein sequence of TCONS_00054639-protein

>TCONS_00054639-protein ID=TCONS_00054639-protein|Name=TCONS_00054639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MGGQTTIVEPILFAYMFNNFILSPVEQQLVFRKTCFQNFNKSYCQILFES
KNETYKDDQNFLQEKTSQWDIYSNLVQMLPAIISTLVYTSWSNRIGRKRV
MILPMIGGTILTITLILNSYFEEWPLELLLIGSFLDGCFGQFVAIIASIY
SYAADVTSIEGRTKRTVILESMMFLGGVVSSAISGILLQKYGFIPTFLLV
LAMFAFQMIYWCFLQESYPPRPDQPKISFCQILKGEALTGAIRVVFKKRN
GNKRRTILLLYVVLLLFTSVYTGYGDVSVLYILHPPINFSSANIGYMYAQ
FNGLKFIGASFINYVFLHKLGIPDIRILTIFPLAFIGFCLTLAFTTTAWQ
VFASAAWGLGLGVGPGAIRGRLSKIVGRSEQGHLFAFIASTEIAIAFVVS
IAFNAIYKATVSISTKII
Run BLAST on NCBI

transcript from alignment at scaffold_243:425795..438133-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054639 ID=TCONS_00054639|Name=TCONS_00054639|organism=Clytia hemisphaerica|type=transcript|length=12339bp|location=Sequence derived from alignment at scaffold_243:425795..438133- (Clytia hemisphaerica)
TTTTCAGACTAATCACTACTAAATCAACTAACAATTAATAAAACTAAGGA
GAAGCAGAAAATGAAATTTGCAAAAATTATATAACTTAACTTGCAAGATT
GATCAATAAAATCAAGGTACGTAATTTTAATATCATGTGATTATCCATCA
CGCCATCATAATTTTCAAGTTTATTTTAGGAGTAGAGACATAACTTAAGT
CTGCTTCAAAATTTTGCGTTTTTTATTTACATAGTTACCGCACACTAGTT
CTACATCTCACGATATTCATCACGTGATATTTTATACGGAAGCACCAGGT
CCGGGTGTTTAGTACTTATTTTGAATTTAAAAAATAAAACTAGTGGCAAA
CGCCCGGAGCTATTTTCGGGTGCTTCCGTATAGAACGTTCCGTATTGAAT
GTCATGTATAGAGAAACTTGCAGAGTCTATCTTTGCAAATTTTTAACAAG
CCTTGTAATACGAAGCTGATGAGGACGTAACGATGTTTAAAGCTGGGAAA
AGGATCTTTTAGATATTCGTAAAAATGTGTACGGTCAAATATTTGTAGTA
TTAGACTGGAGTCGTTTATAATGCGTGTAATACAGTAGTATAGGCGTTAT
ATGATAATACGACTATTGTTACGGGATTTAGTTTGTACAAACTAAAATTT
GTTCTCTCCATTACTTTTTGCTTTATTTCTACTATGTCTGAATTAGTCGT
CTAGTTTGATAGACTATGCTAATATTAATTATACAAAGTATTTGTAAATT
TGATTTCGTCAATTGAGAAATGCGATCCTAAACTTAAAAACCTAAACCTC
TGATATAATAAGTTTATAGGAGGCTTATGAAAAAAAGGGTTGTGTCAAGT
GCTGTGAACTTGTAATTCAAATGAAGTGATAAAAGTAAACTTAACGCGTG
ACTTTTAAATGTTCAACGTATTTTGTTTGCTATATTTTTTATTGACTTTT
TTTAGGTTTTAGTTGTTTGTTTTTCCAAAATCAATATATGGAGCTACAAA
TATTCGCATTCTCTATAAAAATGATTATTCAATTTTGACATTCTCTGGTT
GTTTCTAATTGATCAGTTTATACTCATGTCTTGCATGAACTTTGCACATT
GATACATTGGAGGAACAATACCGTACACGTTTTGTAATTAGAACCCAGCT
TATAAGAAAATTTAGAACTGAAATTAAAAATAAGAACAACGTAAGAACAT
CGAGAACATGACAAGCCAAATTTGCTCAAAATTATCTGAAACTTAAGTAA
TTCCAGTAATTATTTTACTTTCAAACTTGAATTTGAGCAAATTTATTCGG
CTTGAGGGCCATTTTTTATATCTCAAAGGTATTTCTGTATATTCAAGTAA
ATTAATTTCAAGAACGCCAATAAAAAGATTTTAGACTCAAAATTGCCTCT
TCTTTCAGATAATTTAATGCAGAAGAACTCACCATGGGCGGTCAGACGAC
GATCGTGGAACCCATCTTATTTGCTTACATGTTCAACAATTTCATTCTAT
CACCCGTCGAACAACAACTAGTCTTCAGAAAAACATGCTTTCAAAACTTC
AACAAATCATACTGTCAAATTCTATTCGAATCGAAAAACGAAACTTATAA
GGACGATCAGAATTTTTTACAAGAGAAAACTTCACAATGGGACATTTACT
CTAATTTGGTTCAAATGTTACCAGCTATTATATCCACGCTTGTTTACACC
AGTTGGTCAAATAGAATCGGTCGCAAACGGGTTATGATTCTACCCATGAT
TGGAGGGACAATACTAACAATAACACTTATCTTAAACTCATACTTCGAGG
AATGGCCTTTAGAGTTGTTACTGATTGGTTCTTTCTTAGATGGTTGCTTT
GGTCAATTTGTGGCAATCATAGCATCCATTTATTCATACGCTGCAGATGT
GACGTCCATTGAAGGACGTACTAAACGAACAGTTATTCTTGAATCTATGA
TGTTTCTTGGTGGTGTCGTTTCAAGTGCAATCAGTGGTATCTTATTACAG
AAATATGGTTTCATACCAACTTTCCTACTGGTATTAGCAATGTTTGCATT
TCAAATGATTTATTGGTGTTTTTTACAAGAATCATATCCACCAAGGCCTG
ACCAACCGAAGATTTCATTTTGTCAGATCTTGAAAGGTGAAGCATTGACA
GGTGCCATTCGTGTTGTGTTTAAAAAGAGGAATGGTAACAAACGAAGAAC
CATCCTTCTGTTGTACGTTGTTCTATTGCTCTTCACTTCGGGTAAGATTC
TTCATTGTTTCTACCATAGTGATTTGAAAATGAAACTGATAACAGTAATG
AGACTCTCCAGTGGTTTTCTTGTGTGATAGAGTGATCCAAAAAGTTTTTA
TTGCATGGTACAAAAATTTGTAGGTACAATGCGTGATTTTGGCTATTTTG
GCTATTTTTAAGCGATAATAAATCTTAACGATTTTCGTAATGTACGGACA
AAAAATATTGCGTGATAATGAGGGTGCCTCTGGGGCCTCAGTAAACGTCG
TTCCGAAAGAATTTTCGTAAATTCTTTCCAACCAACTACCTATTCTAAAA
TTTTCAAATTTTTTATTTTTCTTGCCTAGTGTACACTGGATACGGTGATG
TGAGTGTTCTATACATCCTACATCCACCAATCAATTTCTCTTCTGCCAAT
ATTGGTTACATGTATGCACAGTTCAATGGTCTCAAATTTATTGGTGCTTC
ATTCATCAACTATGTCTTTTTGCACAAATTGGGTATTCCTGACATTCGAA
TATTGACCATTTTTCCGTTGGCTTTTATTGGTTTTTGTTTAACTTTGGCG
TTTACAACGACGGCTTGGCAAGTCTTTGCATGTAAGTGACAGATTTATGA
AACTTCTTATTCCGTGTTCTTAAAACTTATCCTTAAGGCCGGGGCAAACC
GATCCAACATTTCATCCAACATGCCTTTTTTCTGATGTTGGATGAAATGT
TGGACCGGTTTGGGTCAATTCAAATTTTTGGAAAAAAATGAAAATTCAAA
AAAAAAAAAAAAGTACCACCAAACCAATCCAACACGAAAAATTACACAAT
TCAATAAGAGAGCTTCTTTGATCTCGCCGCAAATGTTGGATGAAATGTTT
GATGGTGATCAAAACTTCATCCAACACCATCCAACACGATTTTTTTCTTC
TTTTTTTGAATTTTCATTTTTTTCCAAAAATTTGAATTGACGTCAACCGG
TCCAACATTTCATCCAACATCAGAAAAAGGCATGTTGGATGAAGTTGGAT
CGGCTTGCCCTGGCCTTGCACCTTATCAGTAGAAAATTGGTCGGCAAAAG
GTTTTGTCACCTTGTCAATAATGTCCACACCTTTTACCGACAATTTTTTT
TTGCCAGAAAAACGTCAATTTTTAATTGGAATTAAAGATTTTATTTTTAC
ATAAGTGTTCCCGTTTTATATCAGACACATGTTTCGTATCAGGACAGTGT
CTGCCTATTGTTATAGTTATTTTGCTGATGTAAAATTTCCTCTTTCTGAC
CAACTTGCTCCATATCCGTGTCAATTCAATATTAAAAAGCTTGTGAATTA
AAATTGATGAGTTAGCAAGCATTATCACTCTTATTTAAAAACAAAACCTT
TAAAGCCGAAAAGCACCAGAGAATTCAGCAACTATTACCTTAGGGGAACT
TATATTTTGGCGGAAAAATCCTGAAAATTTTTTATTTTAGCGAGAACTTA
TTTTGGCGATTGATGAATTTTTTTAATTTTGGCAGGAACTAATTTTGGCG
AATGACAGTGTAACTCTGTTCTATTTTGCCATATTTGAAGCTTTTTTGTA
AACTCAAGAAGTTATTTAGGCAAAACTAGACGGTTCCCGTCGTCGCAAAC
GCCGGTTAACGGTTTTGCTTGCACATCAAAAGCCTTTAAAATATTATAAT
GTGGGTTAATTACTGACATCGTTTTGGCTTAAAATGCCGAATACAATAAT
AAAAATTATACTTCTAAACTTTCTACATTAGTCAAAATTTTGTGTCTGTA
AGCCTCTATGATATGTCTTTTTAAGATAACGGAAGTTTGTGTTCAATGAA
ATGCCATAGTGACCCTGTCAAAATTATCGAGGGTATCCGTCGTTGCAGAC
GCCCAAAGGTGTCTGAGTTGGTGAGAGGGTTGTTTCTAGGAAAGAAAAAG
GCTTAGTTGTGAAGGAGAGGCTCGCGCTTTGCGATTGAGCACTGAAGGTT
TTCCCGTTTGTTGGCTTCACATGCGGACAGCTTAAGACCGACGCATATGC
AATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGGAGGATAGGTTTTCCAGCCGCGGCGTTC
AAATTTTAGAAACCTTAATATGTTACTGGGCTAGCGTTACAGACATTTTT
CATAAACTCATTTAGTATATTAAGATAGCAAAAATTTTAATTTTGGTGGG
AACTTATTTTGGTGAGTGAGCAAAATATTTAATTTTGGCGGAAACTAGTT
TTGGCGAATTTTGTCTAAATTTGCCGAATTCGCCAAAATTAGTTCCCGCC
AAAATAATTTCCCTTCAGGTAAATTACCTAGTTTCTGTAGTAATGTTCTG
TCGTAAATAAAAACATTAACCCAAAATTTTGCGTTAAAGTATTCAATTTC
AAACAAAAAAATGTTTAAAGTCACCAAAAGTTTTCTAATTTTCTACCCAT
AAGGTAGTGTCAATGTGACAATAATATGCTTCGAAAGTTTTCAAAGAAAG
TCCTTATATAAATTTTACAATTCTTAATTTAGCTGCAGCATGGGGACTTG
GGCTGGGTGTTGGCCCAGGTGCGATTCGTGGAAGGTTGTCGAAAATCGTT
GGAAGAAGTGAACAAGGTATGGTAAAAAAATGCTTTCGGTCTTTTTACAT
CCCCTTCTCACAGACCCGGTAGGATTNTGAACAAGGTATGGTAAAAAAAT
GCTTTCGGTCTTTTTACATCCCCTTCTCACAGACCCGATAGGATTATTTC
AGCCAGTAGTGTAGAAATAACGGACTGAAACTCGATTGAGATTGGCTTTC
CCATGTATTTTATGGCTCTACATTGAATTCCATTTGTCAGAAAAATCTTT
GGAATGTTGAAAAATATGACAATATTTTGTGGTGAGGATTCGTTTATTTA
ATTATTTTAATCGGGGATAAAAATTGGAATATAATTTTCCACTGGGGACG
ATTTTTTGGTCAATTCTTCCAGTGAGAGGGGGTCTTTGAGAGGGAGGGTT
TTTACCAAAACCAGTATCCCACATCGGCACAGAAAGTTAATACGATTACT
TATATCCTTAAGGGCTGACCATAGTCTAAAAATAGATTTTAGTATTTGAA
CATAAAATTTATGTTTTAGGTTCTTTAACACTTTTATCAAAGAATTGCTT
TTAGAAATTGCTTTTTAATCAAATCCCTTGAGAGTAATTAAGAATTTAAC
TGCAAAAATGACGCTATGAACTTTAAAAAGACGTTAATAATGTGTTGCAC
CTTCTTTTATAAAAAGTGCTAAGTTTTAATGGGTAATTAACCTTTTTGTT
TCCAAGTTTTTTCAAACTGGCTGCGTTTAGACCAACTGGCATTTGTAATT
TGGCATTTACTCATGAGGGATTCGATTTTGATAGCTTTTCCATTGTATTT
TCTGTCATGGCATTTAAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCATCATTAGGCATTTGA
CAAACCGAACAATTGCGCGGAACAATAGAATTCAAAAGAATACTGCAAGC
AATTACAAATGCCAGGCTGGTCTAAACGAAGCCACTGTCCTCAAAGAATA
GCGCTCCGCAATGCATACGTCATAATTATTACTTTTCACTTTTTTTGACA
TTTGTACGAGTTGCAATCCCACAATTCAACGCGGCTCAATTAAAGATACG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTCAGCGCGGTGCGCTATTGAACTGTTTTAAATT
TTTCTAAATTGAGGCATCAAAAGTAGAATATATATTTTTTTTCGGTAAAA
GATACACCACCTACCGCAAAAAGTTTTTCAAAATGTTTTTTCTTCGTTGA
AAATAAGCTCTTCGAAGTTGAAATGCTCTTCTTGGCAAAAGTCTTCAAAT
TCTTCTTCATCAATTTTTTTTATTGCGTTTCTTAAATTTTCAGACTCGAG
GATAATTGGCCTAACAGAAAATGTATAACATGCCACCGTTTTGTGGGCTA
CATCAAGTAGAGATTTATATTTTGTACGTGGCAATTATTGAAAATTCACT
ATGGTCAGAGCCCTTAAAACATAATTTTTGATGATACAATGATATACAAA
AGAAGACGCGCACGTCTCTGATGCGATGCTGGCAAAGCAAAATTAATTGC
TCGCACGGCTTGGCATAGAAATGGTTTTGATAAAAATGCATGTATTTTAC
AACTTTTACAACATGGGAAGCTTGTTTACTTTTCAGGTCATTTATTTGCA
TTTATTGCATCAACGGAAATCGCCATAGCTTTTGTAGTAAGCATTGCGTT
TAATGCAATTTACAAAGCAACAGTATCCATCTCAACGAAGATTATTTGAT
ACATTTTATCAGCGCTGTCACTTGTCTCCTTCATTATTGTTATGTAAGTC
TTCAATAGTTTGGTAGAATTAACTCAATCGAATTAAAACGTTTTAGACCC
TTTTTGGGCCCCATTTTTTGATGATGTTATTTGTCAGTACACGAGTCTCA
AAGATGTGCCAGATACGCTTATGTCTTTAGGGAAAGCCAATGAGAAAGAT
TAACTAAAAATCTTGCCCCGTCTGACTGAAAACAGGGATGTGCTTAACCT
ATACAAACCCCTGCAAACAAAGACTGTTTCAAAAATGAATTTCGACACTT
GATATCTAAAGATCATGAAAAGTAGATAAGGAAAATGGGGTCGTTTTTTT
TGTAATTTCGTCAATTAGACCCCTTAAATGGCTCGAAAATCCGTCACTTT
CTTGGTGGCGTCGTTAGCTAATGCTCAGTAAGATGTGCATTTTCAAACCA
GACTCAAAAGACAGGCCTTGAAATGAATTAACCGAAAACGGTATGGTTTT
AAAAGTATTCGGTAGCTACATCACAAGATATCTAGGTTTTGAAATCAATG
TTTTCTGCTGAGTTAGCACATTTTACATTATTTTAGCTGAGTCAGCAAAA
TTTTAAAACATCAACACACTGAAAGGTTTTTTTGAAACTTCGTCACTTGC
CTAAAAGTTTCAGCACTTTACCCGACTATTTTTTCCCCTTCAAAGCCAAT
CTATACTCATATGAAGCTGCTTGCTGATATTGCAGAAGCAATCTTAGAGT
CTTTTTACTGCCAGATTATTTAGGTTTTAGCGCTTCTTTGATGCTAGTTA
ACATAAAGTTTTTTGACATTTTTTTAGTTTTGTTCAAGAAAATTTCGCAG
ATAAGACTTTTCTAAATTTTCATGGAGACTTAATTCGCGGATGACACCCA
AATCCGCGAAAATTTATCCCATTAAGGTAATTTTAAAATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCGACTATTTTTTCCCCTTCAAAGCCAATCTATACTCATA
TGAAGCTGCTTGCTGATATTGCAGAAGCAATCTTAGAGTCTTTTTACTGC
CAGATTATTTAGGTTTTAGCGCTTCTTTGATGCTAGTTAACATAAAGTTT
TTTGACATTTTTTTAGTTTTGTTCAAGAAAATTTCGCAGATAAGACTTTT
CTAAATTTTCATGGAGACTTAATTCGCGGATGACACCCAAATCCGCGAAA
ATTTATCCCATCAAGGTAATTTTAAAATGTACTTTAATGGGATAAACTTT
CGCAGGGATTAAATTTCGCGGATTTGGGTGTCATCCACGAAATTAAGTCC
CAATGGAAATCTGGAAGGCCCTCATCTGCGAAATATTTCTAAACAAAACT
CAAAATATGTCAAATAAATACTATTTGAATGGTTAATTGCATCAAAGAGG
CGCAAATAATGTGTATTTCAACAACCNATAACTAAATAATATAAATACTA
TTTGAATGGTTAAATGCATCAAAGAGGCGCAAATAATGTGTATTTCAACA
ACCAATATGCATGATTTGAAAGATAAAGTCACAAATTCGTGAAAATATTG
CCCCTAATAGTGCCACCCGCGAAATTAAGTCCCCGCGAATTTTTTTAATT
TCGCGGATAGGCCCAACCGCGAAATTTAATCCCTGCGAAAGTTTATCCCA
TTTAAGTATCTGATTGGTTTCTTTTTAAACAGTGGATTGATCATCAACGG
AGACGACGAAGAAGATTACGAAGAATTGAATGAAGAAAATGAAAATGAAG
ATGATGAGAATTCAAAACATGACTCGCTCAACAAAACTGTATGAAAATAT
CCGCTGACGAGATACTGCACGTCTTTTGAAACATATATCATTTTAATACT
ATTGTTTGTCCCCGAAAAATAATTATAAAAAATTTTATACCTAATTTTTA
TGATCAAGCTATTTCTTTTCTAAAAAAGTGTTTAATTACTTTGCCTTGTA
GCTTGTAACTAAATATCTATTTAATGTAACAAATAAGTTTCTTCTCATTG
TAAATAATTTCATACACAGTAAAATTAATGCTTTTACAAGTTTCTATTTC
CATGAATTGTGTCCCGCTTTTCTGTTCGTATTGGCGTACCTTAATTCTTG
TTTAGTACTAGTAGTGGTTCTTCACTTTCACACGTGAGA

Coding sequence (CDS) from alignment at scaffold_243:425795..438133-

>TCONS_00054639 ID=TCONS_00054639|Name=TCONS_00054639|organism=Clytia hemisphaerica|type=CDS|length=5028bp|location=Sequence derived from alignment at scaffold_243:425795..438133- (Clytia hemisphaerica)
GTCATTTATTTGCATTTATTGCATCAACGGAAATCGCCATAGCTTTTGTA
GTAAGCATTGCGTTTAATGCAATTTACAAAGCAACAGTATCCATCTCAAC
GAAGATTATTTGACTGCAGCATGGGGACTTGGGCTGGGTGTTGGCCCAGG
TGCGATTCGTGGAAGGTTGTCGAAAATCGTTGGAAGAAGTGAACAAGTGT
ACACTGGATACGGTGATGTGAGTGTTCTATACATCCTACATCCACCAATC
AATTTCTCTTCTGCCAATATTGGTTACATGTATGCACAGTTCAATGGTCT
CAAATTTATTGGTGCTTCATTCATCAACTATGTCTTTTTGCACAAATTGG
GTATTCCTGACATTCGAATATTGACCATTTTTCCGTTGGCTTTTATTGGT
TTTTGTTTAACTTTGGCGTTTACAACGACGGCTTGGCAAGTCTTTGCATA
TGGGCGGTCAGACGACGATCGTGGAACCCATCTTATTTGCTTACATGTTC
AACAATTTCATTCTATCACCCGTCGAACAACAACTAGTCTTCAGAAAAAC
ATGCTTTCAAAACTTCAACAAATCATACTGTCAAATTCTATTCGAATCGA
AAAACGAAACTTATAAGGACGATCAGAATTTTTTACAAGAGAAAACTTCA
CAATGGGACATTTACTCTAATTTGGTTCAAATGTTACCAGCTATTATATC
CACGCTTGTTTACACCAGTTGGTCAAATAGAATCGGTCGCAAACGGGTTA
TGATTCTACCCATGATTGGAGGGACAATACTAACAATAACACTTATCTTA
AACTCATACTTCGAGGAATGGCCTTTAGAGTTGTTACTGATTGGTTCTTT
CTTAGATGGTTGCTTTGGTCAATTTGTGGCAATCATAGCATCCATTTATT
CATACGCTGCAGATGTGACGTCCATTGAAGGACGTACTAAACGAACAGTT
ATTCTTGAATCTATGATGTTTCTTGGTGGTGTCGTTTCAAGTGCAATCAG
TGGTATCTTATTACAGAAATATGGTTTCATACCAACTTTCCTACTGGTAT
TAGCAATGTTTGCATTTCAAATGATTTATTGGTGTTTTTTACAAGAATCA
TATCCACCAAGGCCTGACCAACCGAAGATTTCATTTTGTCAGATCTTGAA
AGGTGAAGCATTGACAGGTGCCATTCGTGTTGTGTTTAAAAAGAGGAATG
GTAACAAACGAAGAACCATCCTTCTGTTGTACGTTGTTCTATTGCTCTTC
ACTTCGGGTCATTTATTTGCATTTATTGCATCAACGGAAATCGCCATAGC
TTTTGTAGTAAGCATTGCGTTTAATGCAATTTACAAAGCAACAGTATCCA
TCTCAACGAAGATTATTTGACTGCAGCATGGGGACTTGGGCTGGGTGTTG
GCCCAGGTGCGATTCGTGGAAGGTTGTCGAAAATCGTTGGAAGAAGTGAA
CAAGTGTACACTGGATACGGTGATGTGAGTGTTCTATACATCCTACATCC
ACCAATCAATTTCTCTTCTGCCAATATTGGTTACATGTATGCACAGTTCA
ATGGTCTCAAATTTATTGGTGCTTCATTCATCAACTATGTCTTTTTGCAC
AAATTGGGTATTCCTGACATTCGAATATTGACCATTTTTCCGTTGGCTTT
TATTGGTTTTTGTTTAACTTTGGCGTTTACAACGACGGCTTGGCAAGTCT
TTGCATATGGGCGGTCAGACGACGATCGTGGAACCCATCTTATTTGCTTA
CATGTTCAACAATTTCATTCTATCACCCGTCGAACAACAACTAGTCTTCA
GAAAAACATGCTTTCAAAACTTCAACAAATCATACTGTCAAATTCTATTC
GAATCGAAAAACGAAACTTATAAGGACGATCAGAATTTTTTACAAGAGAA
AACTTCACAATGGGACATTTACTCTAATTTGGTTCAAATGTTACCAGCTA
TTATATCCACGCTTGTTTACACCAGTTGGTCAAATAGAATCGGTCGCAAA
CGGGTTATGATTCTACCCATGATTGGAGGGACAATACTAACAATAACACT
TATCTTAAACTCATACTTCGAGGAATGGCCTTTAGAGTTGTTACTGATTG
GTTCTTTCTTAGATGGTTGCTTTGGTCAATTTGTGGCAATCATAGCATCC
ATTTATTCATACGCTGCAGATGTGACGTCCATTGAAGGACGTACTAAACG
AACAGTTATTCTTGAATCTATGATGTTTCTTGGTGGTGTCGTTTCAAGTG
CAATCAGTGGTATCTTATTACAGAAATATGGTTTCATACCAACTTTCCTA
CTGGTATTAGCAATGTTTGCATTTCAAATGATTTATTGGTGTTTTTTACA
AGAATCATATCCACCAAGGCCTGACCAACCGAAGATTTCATTTTGTCAGA
TCTTGAAAGGTGAAGCATTGACAGGTGCCATTCGTGTTGTGTTTAAAAAG
AGGAATGGTAACAAACGAAGAACCATCCTTCTGTTGTACGTTGTTCTATT
GCTCTTCACTTCGGGTCATTTATTTGCATTTATTGCATCAACGGAAATCG
CCATAGCTTTTGTAGTAAGCATTGCGTTTAATGCAATTTACAAAGCAACA
GTATCCATCTCAACGAAGATTATTTGACTGCAGCATGGGGACTTGGGCTG
GGTGTTGGCCCAGGTGCGATTCGTGGAAGGTTGTCGAAAATCGTTGGAAG
AAGTGAACAAGTGTACACTGGATACGGTGATGTGAGTGTTCTATACATCC
TACATCCACCAATCAATTTCTCTTCTGCCAATATTGGTTACATGTATGCA
CAGTTCAATGGTCTCAAATTTATTGGTGCTTCATTCATCAACTATGTCTT
TTTGCACAAATTGGGTATTCCTGACATTCGAATATTGACCATTTTTCCGT
TGGCTTTTATTGGTTTTTGTTTAACTTTGGCGTTTACAACGACGGCTTGG
CAAGTCTTTGCATATGGGCGGTCAGACGACGATCGTGGAACCCATCTTAT
TTGCTTACATGTTCAACAATTTCATTCTATCACCCGTCGAACAACAACTA
GTCTTCAGAAAAACATGCTTTCAAAACTTCAACAAATCATACTGTCAAAT
TCTATTCGAATCGAAAAACGAAACTTATAAGGACGATCAGAATTTTTTAC
AAGAGAAAACTTCACAATGGGACATTTACTCTAATTTGGTTCAAATGTTA
CCAGCTATTATATCCACGCTTGTTTACACCAGTTGGTCAAATAGAATCGG
TCGCAAACGGGTTATGATTCTACCCATGATTGGAGGGACAATACTAACAA
TAACACTTATCTTAAACTCATACTTCGAGGAATGGCCTTTAGAGTTGTTA
CTGATTGGTTCTTTCTTAGATGGTTGCTTTGGTCAATTTGTGGCAATCAT
AGCATCCATTTATTCATACGCTGCAGATGTGACGTCCATTGAAGGACGTA
CTAAACGAACAGTTATTCTTGAATCTATGATGTTTCTTGGTGGTGTCGTT
TCAAGTGCAATCAGTGGTATCTTATTACAGAAATATGGTTTCATACCAAC
TTTCCTACTGGTATTAGCAATGTTTGCATTTCAAATGATTTATTGGTGTT
TTTTACAAGAATCATATCCACCAAGGCCTGACCAACCGAAGATTTCATTT
TGTCAGATCTTGAAAGGTGAAGCATTGACAGGTGCCATTCGTGTTGTGTT
TAAAAAGAGGAATGGTAACAAACGAAGAACCATCCTTCTGTTGTACGTTG
TTCTATTGCTCTTCACTTCGGGTCATTTATTTGCATTTATTGCATCAACG
GAAATCGCCATAGCTTTTGTAGTAAGCATTGCGTTTAATGCAATTTACAA
AGCAACAGTATCCATCTCAACGAAGATTATTTGACTGCAGCATGGGGACT
TGGGCTGGGTGTTGGCCCAGGTGCGATTCGTGGAAGGTTGTCGAAAATCG
TTGGAAGAAGTGAACAAGTGTACACTGGATACGGTGATGTGAGTGTTCTA
TACATCCTACATCCACCAATCAATTTCTCTTCTGCCAATATTGGTTACAT
GTATGCACAGTTCAATGGTCTCAAATTTATTGGTGCTTCATTCATCAACT
ATGTCTTTTTGCACAAATTGGGTATTCCTGACATTCGAATATTGACCATT
TTTCCGTTGGCTTTTATTGGTTTTTGTTTAACTTTGGCGTTTACAACGAC
GGCTTGGCAAGTCTTTGCATATGGGCGGTCAGACGACGATCGTGGAACCC
ATCTTATTTGCTTACATGTTCAACAATTTCATTCTATCACCCGTCGAACA
ACAACTAGTCTTCAGAAAAACATGCTTTCAAAACTTCAACAAATCATACT
GTCAAATTCTATTCGAATCGAAAAACGAAACTTATAAGGACGATCAGAAT
TTTTTACAAGAGAAAACTTCACAATGGGACATTTACTCTAATTTGGTTCA
AATGTTACCAGCTATTATATCCACGCTTGTTTACACCAGTTGGTCAAATA
GAATCGGTCGCAAACGGGTTATGATTCTACCCATGATTGGAGGGACAATA
CTAACAATAACACTTATCTTAAACTCATACTTCGAGGAATGGCCTTTAGA
GTTGTTACTGATTGGTTCTTTCTTAGATGGTTGCTTTGGTCAATTTGTGG
CAATCATAGCATCCATTTATTCATACGCTGCAGATGTGACGTCCATTGAA
GGACGTACTAAACGAACAGTTATTCTTGAATCTATGATGTTTCTTGGTGG
TGTCGTTTCAAGTGCAATCAGTGGTATCTTATTACAGAAATATGGTTTCA
TACCAACTTTCCTACTGGTATTAGCAATGTTTGCATTTCAAATGATTTAT
TGGTGTTTTTTACAAGAATCATATCCACCAAGGCCTGACCAACCGAAGAT
TTCATTTTGTCAGATCTTGAAAGGTGAAGCATTGACAGGTGCCATTCGTG
TTGTGTTTAAAAAGAGGAATGGTAACAAACGAAGAACCATCCTTCTGTTG
TACGTTGTTCTATTGCTCTTCACTTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034419XLOC_034419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054639-exon-scaffold_243-1575043694:438018..438133TCONS_00054639-exon-scaffold_243-1575043694:438018..438133Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1575043694:435893..436725TCONS_00054639-exon-scaffold_243-1575043694:435893..436725Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1575043694:435303..435554TCONS_00054639-exon-scaffold_243-1575043694:435303..435554Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1575043694:432568..432651TCONS_00054639-exon-scaffold_243-1575043694:432568..432651Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1575043694:429141..429297TCONS_00054639-exon-scaffold_243-1575043694:429141..429297Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1575043694:425795..426251TCONS_00054639-exon-scaffold_243-1575043694:425795..426251Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1510915933:438018..438133TCONS_00054639-exon-scaffold_243-1510915933:438018..438133Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1510915933:435893..436725TCONS_00054639-exon-scaffold_243-1510915933:435893..436725Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1510915933:435303..435554TCONS_00054639-exon-scaffold_243-1510915933:435303..435554Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1510915933:432568..432651TCONS_00054639-exon-scaffold_243-1510915933:432568..432651Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1510915933:429141..429297TCONS_00054639-exon-scaffold_243-1510915933:429141..429297Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1510915933:425795..426251TCONS_00054639-exon-scaffold_243-1510915933:425795..426251Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1491911889:438018..438133TCONS_00054639-exon-scaffold_243-1491911889:438018..438133Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1491911889:435893..436725TCONS_00054639-exon-scaffold_243-1491911889:435893..436725Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1491911889:435303..435554TCONS_00054639-exon-scaffold_243-1491911889:435303..435554Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1491911889:432568..432651TCONS_00054639-exon-scaffold_243-1491911889:432568..432651Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1491911889:429141..429297TCONS_00054639-exon-scaffold_243-1491911889:429141..429297Clytia hemisphaericaexon
TCONS_00054639-exon-scaffold_243-1491911889:425795..426251TCONS_00054639-exon-scaffold_243-1491911889:425795..426251Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054639-proteinTCONS_00054639-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:425795..438133 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.96959	6.46891	2.94736	2.1394	0	0	0.368953	0.260376	0.760678	0.189694	0.371306	0.427694	0.118053	0	0.116604	0.0620962	0	0.281186	0.180091	0.253755	0.507424	0.861308	4.02311	3.89122	0.218776	0	0.230282	0.307204	2.32939	2.96742
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00054639 vs. Swiss-Prot (Human)
Match: S46A3 (Solute carrier family 46 member 3 OS=Homo sapiens GN=SLC46A3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.357e-21
Identity = 110/422 (26.07%), Postives = 187/422 (44.31%), Query Frame = 1 
Query:  163 VEPILFAYMFNNFILSPVEQQLVFRKTCFQNFNKSYCQILFESKNETYKDD-----QNFLQEKTSQWDIYSNLVQMLPAIISTLVYTSWSNRIGRKRVMILPMIGGXXXXXXXXXNSYFEEWPLELLLIGSFLDGCFGQFVXXXXXXXXXXXD-VTSIEGRTKRTVILESMMFLGGVVSSAISGILLQKYGFIPTFLLVLAMFAFQMIYWCFLQESYPPRPDQPKISFCQILKGEALTGAIRVVFKKRNGNKRRTIXXXXXXXXXFTSVYTGYGDVSVLYILHPPINFSSANIGYMYAQFNGLKFIGASFINY---VFLHKLGIPDIRILTIFPLAFIGFCLTLAFTTTAWQVFASAAWGLGLGVGP--------GAIRGRLSKIVGRSEQGHLFAFIASTEIAIAFVVSIAFNAIYKATVS 1377
            VEP +F   F   +  P+  Q V+R+   +  N ++      S+ E  K       Q  +Q+K S++++  ++  ++P ++ST +  S S+  GRK  MIL  +G    ++ L L  YF  +P +LL+  +F+    G +     + ++Y  D     + +T R  I++ ++ L   ++   SG  +++ GF  +FL++    A  +IY  F             ++       + L     ++FK  +G +R  + LL   ++ +  V  G   + +LY L  P+ ++   IGY      G     ASF+     ++L    + DI       +AFIG   T+  T  A   FAS    + L   P          +R  LSK+V  +EQG LFA IA  E          FN IY ATV+
Sbjct:    6 VEPAIFLSAFAMTLTGPLTTQYVYRRIWEETGNYTFSSDSNISECEKNKSSPIFAFQEEVQKKVSRFNLQMDISGLIPGLVSTFILLSISDHYGRKFPMILSSVGALATSVWLCLLCYFA-FPFQLLIASTFIGAFCGNYTTFWGACFAYIVDQCKEHKQKTIRIAIIDFLLGLVTGLTGLSSGYFIRELGFEWSFLIIAVSLAVNLIYILFFLGDPVKECSSQNVTMSCSEGFKNLFYRTYMLFKNASGKRRFLLCLLLFTVITYFFVVIGIAPIFILYELDSPLCWNEVFIGY------GSALGSASFLTSFLGIWLFSYCMEDIH------MAFIGIFTTM--TGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYSATVA 412
The following BLAST results are available for this feature:
BLAST of TCONS_00054639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S46A33.357e-2126.07Solute carrier family 46 member 3 OS=Homo sapiens ... [more]
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