TCONS_00054640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054640
Unique NameTCONS_00054640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054640 ID=TCONS_00054640|Name=TCONS_00054640|organism=Clytia hemisphaerica|type=transcript|length=1527bp
TCTAGATCAATCGATAaataaataacaataataataacaaaaatgGTTGA
ATCAAGATATGTGGAACCGGTGTTGCTTGGTTACATGTTTTTCTTATACT
CAGCCATGACTTTGAGTCAACAGTTAGTGTACCGTAAAACATGCATCCGG
CAATTCAACACTTCATATTGTCACCTCATATCCGaatcaaaaaatgaaac
attataCAAACATGATTCTGATCTAATCCAAAAGGAGACTTCCCAATGGA
TAATGTATCTGTCTATAATACGAACAATCCCAGCGGTAATATCAACTCTG
GTTTGTACAGCTTATTTTGATCGTGTTGGTCGTAAACGTATTATGATTAT
GCCTATAATAGGTGCAACGCTGGTCACAATTAGTGATTTAGCAAATTCGT
ATTACCTTTCTTCATCTATCGTATGGATGTTTTTTGGAGCATTTCTTGAT
GGCTTATTTGGTCAATTTGCATCCATCCTAGCATCGGCTTTTGCTTATCT
AGCAGATACAATCAGTGTAGAGAATCGAACCAGAAGAGTAATTTTACTGG
AATCAATGGTTTTTCTTGGTGGATGTATTGCAGAGATTGGAACTGGACAG
CTCCTACAGCATTATGGTTTTCTACCACCTTTTATAATGGTGTTGTTGGT
TCTGGTCATGGTTATCATTTATTGGTTTTTCTTGAGAGAATCGTACCCAC
CTACTGATGGAGATTCAAAGATTGGTTTTTTTGCTATCATTCGTGAAAAA
CTGTTCAAAAGAGGCTATAAAATGATATCGGACCAAAATACCGTCAGACG
GCGGAAGATAATTTTGTTATGGCTTTACTTCTTTATTGCCTTATTTATGA
TGGCTGGCTCAGTGTCAGTTCTTCTCCTCTTCATCTTACGACCACCGATC
AGTTTCTCACCTGCAAACATTGGTTTCTTCCTCGCCGAAGCACAAGCAAT
TAAATTCATAGGTTCACTTTTCGCTAATTATATATTGATTCGTGTACTTG
GCTGGAccgataacagcattttattgATCTATGGGATTACATCAATGGGT
TTTTATCTTTCACTTGCATTCTCGTCAACAACTTGGCATATTTATTTGCt
TGCTATTTGGAATGCTGGTACTGGACTTGGTGCTCCTGCAGTCAGAGGGA
AATTatcgaaaatgttttcaaaagaagATCAAGGTGTATTATTTTCATTG
ATTGGTTGTATCGAGACCTCTGCTGCTCTTGTAGCAGGTCCAGTTGCTAG
TGCTATCTACAAATCAACGGTATCGGAAATTCCAAATGCTGTTTTCTTTA
TCTTCACTGGTTGCGCTGGTATCATCACCTGTTTTGTATTTGCTATCTAC
CATTTGGACAAGTCAGAAAAGAAATACGAAGAACtcaatgaagaagaaga
tggaGAAGAAAGTGGAGTCAAGGCTATCAATTCTTGAGCTATTTTCACGC
AAGTTCTCTCTCTTCCACCAGTGTAAGATTTGCCCGGTTATTTTATTTGA
TGTCTTTTGACGTTGTTATTTTCTTtg
Run BLAST on NCBI

protein sequence of TCONS_00054640-protein

>TCONS_00054640-protein ID=TCONS_00054640-protein|Name=TCONS_00054640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MVESRYVEPVLLGYMFFLYSAMTLSQQLVYRKTCIRQFNTSYCHLISESK
NETLYKHDSDLIQKETSQWIMYLSIIRTIPAVISTLVCTAYFDRVGRKRI
MIMPIIGATLVTISDLANSYYLSSSIVWMFFGAFLDGLFGQFASILASAF
AYLADTISVENRTRRVILLESMVFLGGCIAEIGTGQLLQHYGFLPPFIMV
LLVLVMVIIYWFFLRESYPPTDGDSKIGFFAIIREKLFKRGYKMISDQNT
VRRRKIILLWLYFFIALFMMAGSVSVLLLFILRPPISFSPANIGFFLAEA
QAIKFIGSLFANYILIRVLGWTDNSILLIYGITSMGFYLSLAFSSTTWHI
YLLAIWNAGTGLGAPAVRGKLSKMFSKEDQGVLFSLIGCIETSAALVAGP
VASAIYKSTVSEIPNAVFFIFTGCAGIITCFVFAIYHLDKSEKKYEELNE
EEDGEESGVKAINS
Run BLAST on NCBI

transcript from alignment at scaffold_243:442410..446916-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054640 ID=TCONS_00054640|Name=TCONS_00054640|organism=Clytia hemisphaerica|type=transcript|length=4507bp|location=Sequence derived from alignment at scaffold_243:442410..446916- (Clytia hemisphaerica)
TCTAGATCAATCGATAAATAAATAACAATAATAATAACAAAAATGGTTGA
ATCAAGATATGTGGAACCGGTGTTGCTTGGTTACATGTTTTTCTTATACT
CAGCCATGACTTTGAGTCAACAGTTAGTGTACCGTAAAACATGCATCCGG
CAATTCAACACTTCATATTGTCACCTCATATCCGAATCAAAAAATGAAAC
ATTATACAAACATGATTCTGATCTAATCCAAAAGGAGACTTCCCAATGGA
TAATGTATCTGTCTATAATACGAACAATCCCAGCGGTAATATCAACTCTG
GTTTGTACAGCTTATTTTGATCGTGTTGGTCGTAAACGTATTATGATTAT
GCCTATAATAGGTGCAACGCTGGTCACAATTAGTGATTTAGCAAATTCGT
ATTACCTTTCTTCATCTATCGTATGGATGTTTTTTGGAGCATTTCTTGAT
GGCTTATTTGGTCAATTTGCATCCATCCTAGCATCGGCTTTTGCTTATCT
AGCAGATACAATCAGTGTAGAGAATCGAACCAGAAGAGTAATTTTACTGG
AATCAATGGTTTTTCTTGGTGGATGTATTGCAGAGATTGGAACTGGACAG
CTCCTACAGCATTATGGTTTTCTACCACCTTTTATAATGGTGTTGTTGGT
TCTGGTCATGGTTATCATTTATTGGTTTTTCTTGAGAGAATCGTACCCAC
CTACTGATGGAGATTCAAAGATTGGTTTTTTTGCTATCATTCGTGAAAAA
CTGTTCAAAAGAGGCTATAAAATGATATCGGACCAAAATACCGTCAGACG
GCGGAAGATAATTTTGTTATGGCTTTACTTCTTTATTGCCTTATTTAGTA
AGTAGTTTTCCCACTTTTTTCTTGGCATTTTTTAGTTACCGGGTAGCTCC
CCGATCACCGACCACTCAGAGAATGAGTATCTTGGATTGGGTAATCCAAT
CCAAGTGGTAGGTTACTATGGGAGCTGAGAGTGGATGTGGTGCCTATCTC
AACATTCAACCTCCCAGATCTAGTGAAAATAGAATAGTGGGTTAAAGGCT
CCCTCACTCCCGGCTCCGCCGACAGCCACCAGATGCATATACCTTATTGG
TCTATTTTCACTCTACTTTAAAACTACGATCATAACGACATGAATGTTTC
CGTTGGTCTTACTTTCTTGTCTTTTCTATTTCGACGAAGAGAGTGTGGTT
GAGATTTAGCTGGCGATTTCCGTCCATACGGGTGGCGTGAAACTTTGAGT
TCCTAAGGTAAATATCGTCTCAACCTTCATTTTCACAGCATAAGCAGCTC
TGCACTTGCCCAGAACAATTCAAACTGTCGGTGCATCTTTAACAAAAGTC
CATTTTCGTTTATTTCAGTGATGGCTGGCTCAGTGTCAGTTCTTCTCCTC
TTCATCTTACGACCACCGATCAGTTTCTCACCTGCAAACATTGGTTTCTT
CCTCGCCGAAGCACAAGCAATTAAATTCATAGGTTCACTTTTCGCTAATT
ATATATTGATTCGTGTACTTGGCTGGACCGATAACAGCATTTTATTGATC
TATGGGATTACATCAATGGGTTTTTATCTTTCACTTGCATTCTCGTCAAC
AACTTGGCATATTTATTTGCGTAAGTAAAATCATATGAGAAATTGACTAG
CAATTTTACTATCTACGACTAAAATTTTAGATAATGACTTGAAATTGAAA
TATTCGAATATTACTTTTTGCATAAGTTCACTTTTGAGAATACTGAGTCA
TTTTTTCACACTGTCCAATCCAGTCCAATCTTAATTGTCCATTACATACG
GGAAGAAGTTTTTCAAATTGTAAGGCAATAAATTCATTATTTGAGTAATT
GAGCATTTTTTTTTAATATTTCAGTTGCTATTTGGAATGCTGGTACTGGA
CTTGGTGCTCCTGCAGTCAGAGGGAAATTATCGAAAATGTTTTCAAAAGA
AGATCAAGGTAACGGTCTACTCCTCATTATTTTTATTCTGGACTGGAACA
TTACTCCTATCAACCCTTAGTGTTACGGTGGGCTTTTATAGGGTCTGATA
CATAGATTTATAAAGCCCGAAGGGGTTGTTCTTCGGCTGAAAAGCGTGCC
TTGGTTAGGTAGGAAATCCTACCTAGGTCACGTGATATTACAATAGAATT
TCCACGCTTTACCAATCAGAAGCTTCGCGGGTTTTCGAAAACAATAGCAA
CAATATTTTTTCCGATAGTCTATAAATCTGTGGTCTGATACCATAATGAA
TTTACAAGGAAATGGTGTCAAAAGTCTTTGCGTGAGAATGTAAAAGCAAT
AACTTCAGACATTTTGACGTCATTCTTTCTTCTAGTAAACTTGAGCCCAG
TCTCCTAAATGTTTAAATGTGTATTATTATTGTCTGTCTGCCTTTAAAAC
GCCGACTCGTAATTTTATCGAGGTAGCTACGATTTTATGACGATTTGAGA
TGTGGAAAATGTTTGAATAGGATGAGTGGAAGAATATTATTATACTTACA
TTGTATAAAAAGTACTGTTTTAAAATCTTAACAGAAAAAACGAAATTACC
AATATTCAAGAATAAGAAAAAACGATACAAATTACAGTCAGTGTTAAAAG
TTATCCCGTCTCAGTGTAGTATATAAAGAGGGTGTTCCGTCTTAAAATTC
TGCCTAATTCGCACCAACATTTCAAGGATGTGTGCTACTTTTCTGTGTAA
AATCAAACGAAAAACTTTGCTTTGGCCGCTGATATAAGTCTTTTCTGATT
TTTTGCAGAAAGATGCGTATTCGCAATGCTCAAAACATGGCCGAGTTCAA
TTTTTGAGAAAATTTTTTTTCCGGAAATATGCCGGAAATCGCCGTTTTTC
TGGATTTTCATTGGACTTTTTCCTTACAATTGGTTGTTTTTTCATTCAAA
AACATTATTAATAGCAATGCCCACCATCAAGCATGTTTCAACTTTCAATA
GAATTGATTTTTGAAGCCGGAAGTATTTAAAAATCGCCGGAACAACTTAT
TTTCGCCGGAAAGACAGTATTTCTTGAATTTCTCGAGCTGTACTTTATAT
TTTTTTATGAAATTTTGCACACTGATGCAAAATGACAACACTTAAAATGT
GACGGAGCCCGATTTTCGAAAAACATTTTTTTCCGGCCGAAAATGCCGGA
AATATGCCGGAAGAACTGTTTTTCGGTATTTTCTCGAGATTTTACCTTTA
GTTTTTTCTGATTTTTTGCAGAAAGATGCGTATTTGCAATGCTCAAAACA
TGGCCGAGTTCGATTTTTGAGAAAATTTTTTTTCCGGTTGAAAATGGAAT
TCGCCTTAAGTATGATTCAATCGTCAATAAAACTGATTTTTGCGACCAGA
ACTTTCTATTATTTTTCCCTACAACCCTTCCCTTCCCCGTGAAAAATCAA
TGATGAATTTATTGCGTTATGCATTTTCGCTAAATGCTATATTTTCTGAC
TGATTTTTTTCATTTTTCTCCTCGCATTGCTATCTAACTTTCATCATCAG
GTAGGTCCATTCAGCATCTAGCTTGTTTTCTTTTTTTCTCTACAAAGGTG
TATTATTTTCATTGATTGGTTGTATCGAGACCTCTGCTGCTCTTGTAGCA
GGTCCAGTTGCTAGTGCTATCTACAAATCAACGGTATCGGAAATTCCAAA
TGCTGTTTTCTTTATCTTCACTGGTTGCGCTGGTATCATCACCTGTTTTG
TATTGTAAGTGTTGTCTATTAAAATTTTTGTAAACGGCTAGAACTCTTAT
TTTTCAGTCGCTAAAATTTTATTTTAGGTAGTGCAGTAAGAGATCCCTTA
AAACTTTTGAGCTTTGCGTTACGCTCATTTCTCATCGCCTTAGCTTTCTT
AAAATAACGAGGGCATGCTTTTAGCGTAACTGAACGTTCAAAGCTCAGAG
GGAGGGGGTACGAGGGTTTAGGGATGTTGGGTATGTGCGTGCCGTACCTC
CGAATCTTTATCCTTAGGGATACTGATTTTTGCTGAAAAGGTGACCCTTA
ATAAAGAGACAATTTCACAAAAATGTCTTCGATTTAGAATAAATTCTCAA
ATAATTTGGATAAATTATTTTATAAATAAACTTTTCACTCTTCTTTGACT
CGAGTTTGTGAAAAAACCGACCCTTAGAAAGGCTAATTTAAGATTTTCTG
ACTTTTTGCAACCCTTAGAGAGACTTAAGGTGAAAAACCCGACCCTTCAG
TCACGCACATTACCAGGGGTTCAAAAGGAGTTTGAGGGTTAAATGGAGGG
GTTTCGATGTGTGATTTATCTGGGTTTGATCGTTTTTCGTAGCTATCCAT
CATTTCTCTCTTTATTTCAGTGCTATCTACCATTTGGACAAGTCAGAAAA
GAAATACGAAGAACTCAATGAAGAAGAAGATGGAGAAGAAAGTGGAGTCA
AGGCTATCAATTCTTGAGCTATTTTCACGCAAGTTCTCTCTCTTCCACCA
GTGTAAGATTTGCCCGGTTATTTTATTTGATGTCTTTTGACGTTGTTATT
TTCTTTG

Coding sequence (CDS) from alignment at scaffold_243:442410..446916-

>TCONS_00054640 ID=TCONS_00054640|Name=TCONS_00054640|organism=Clytia hemisphaerica|type=CDS|length=6975bp|location=Sequence derived from alignment at scaffold_243:442410..446916- (Clytia hemisphaerica)
TGCTATCTACCATTTGGACAAGTCAGAAAAGAAATACGAAGAACTCAATG
AAGAAGAAGATGGAGAAGAAAGTGGAGTCAAGGCTATCAATTCTTGAGTG
TATTATTTTCATTGATTGGTTGTATCGAGACCTCTGCTGCTCTTGTAGCA
GGTCCAGTTGCTAGTGCTATCTACAAATCAACGGTATCGGAAATTCCAAA
TGCTGTTTTCTTTATCTTCACTGGTTGCGCTGGTATCATCACCTGTTTTG
TATTTTGCTATTTGGAATGCTGGTACTGGACTTGGTGCTCCTGCAGTCAG
AGGGAAATTATCGAAAATGTTTTCAAAAGAAGATCAAGTGATGGCTGGCT
CAGTGTCAGTTCTTCTCCTCTTCATCTTACGACCACCGATCAGTTTCTCA
CCTGCAAACATTGGTTTCTTCCTCGCCGAAGCACAAGCAATTAAATTCAT
AGGTTCACTTTTCGCTAATTATATATTGATTCGTGTACTTGGCTGGACCG
ATAACAGCATTTTATTGATCTATGGGATTACATCAATGGGTTTTTATCTT
TCACTTGCATTCTCGTCAACAACTTGGCATATTTATTTGCATGGTTGAAT
CAAGATATGTGGAACCGGTGTTGCTTGGTTACATGTTTTTCTTATACTCA
GCCATGACTTTGAGTCAACAGTTAGTGTACCGTAAAACATGCATCCGGCA
ATTCAACACTTCATATTGTCACCTCATATCCGAATCAAAAAATGAAACAT
TATACAAACATGATTCTGATCTAATCCAAAAGGAGACTTCCCAATGGATA
ATGTATCTGTCTATAATACGAACAATCCCAGCGGTAATATCAACTCTGGT
TTGTACAGCTTATTTTGATCGTGTTGGTCGTAAACGTATTATGATTATGC
CTATAATAGGTGCAACGCTGGTCACAATTAGTGATTTAGCAAATTCGTAT
TACCTTTCTTCATCTATCGTATGGATGTTTTTTGGAGCATTTCTTGATGG
CTTATTTGGTCAATTTGCATCCATCCTAGCATCGGCTTTTGCTTATCTAG
CAGATACAATCAGTGTAGAGAATCGAACCAGAAGAGTAATTTTACTGGAA
TCAATGGTTTTTCTTGGTGGATGTATTGCAGAGATTGGAACTGGACAGCT
CCTACAGCATTATGGTTTTCTACCACCTTTTATAATGGTGTTGTTGGTTC
TGGTCATGGTTATCATTTATTGGTTTTTCTTGAGAGAATCGTACCCACCT
ACTGATGGAGATTCAAAGATTGGTTTTTTTGCTATCATTCGTGAAAAACT
GTTCAAAAGAGGCTATAAAATGATATCGGACCAAAATACCGTCAGACGGC
GGAAGATAATTTTGTTATGGCTTTACTTCTTTATTGCCTTATTTATGCTA
TCTACCATTTGGACAAGTCAGAAAAGAAATACGAAGAACTCAATGAAGAA
GAAGATGGAGAAGAAAGTGGAGTCAAGGCTATCAATTCTTGAGTGTATTA
TTTTCATTGATTGGTTGTATCGAGACCTCTGCTGCTCTTGTAGCAGGTCC
AGTTGCTAGTGCTATCTACAAATCAACGGTATCGGAAATTCCAAATGCTG
TTTTCTTTATCTTCACTGGTTGCGCTGGTATCATCACCTGTTTTGTATTT
TGCTATTTGGAATGCTGGTACTGGACTTGGTGCTCCTGCAGTCAGAGGGA
AATTATCGAAAATGTTTTCAAAAGAAGATCAAGTGATGGCTGGCTCAGTG
TCAGTTCTTCTCCTCTTCATCTTACGACCACCGATCAGTTTCTCACCTGC
AAACATTGGTTTCTTCCTCGCCGAAGCACAAGCAATTAAATTCATAGGTT
CACTTTTCGCTAATTATATATTGATTCGTGTACTTGGCTGGACCGATAAC
AGCATTTTATTGATCTATGGGATTACATCAATGGGTTTTTATCTTTCACT
TGCATTCTCGTCAACAACTTGGCATATTTATTTGCATGGTTGAATCAAGA
TATGTGGAACCGGTGTTGCTTGGTTACATGTTTTTCTTATACTCAGCCAT
GACTTTGAGTCAACAGTTAGTGTACCGTAAAACATGCATCCGGCAATTCA
ACACTTCATATTGTCACCTCATATCCGAATCAAAAAATGAAACATTATAC
AAACATGATTCTGATCTAATCCAAAAGGAGACTTCCCAATGGATAATGTA
TCTGTCTATAATACGAACAATCCCAGCGGTAATATCAACTCTGGTTTGTA
CAGCTTATTTTGATCGTGTTGGTCGTAAACGTATTATGATTATGCCTATA
ATAGGTGCAACGCTGGTCACAATTAGTGATTTAGCAAATTCGTATTACCT
TTCTTCATCTATCGTATGGATGTTTTTTGGAGCATTTCTTGATGGCTTAT
TTGGTCAATTTGCATCCATCCTAGCATCGGCTTTTGCTTATCTAGCAGAT
ACAATCAGTGTAGAGAATCGAACCAGAAGAGTAATTTTACTGGAATCAAT
GGTTTTTCTTGGTGGATGTATTGCAGAGATTGGAACTGGACAGCTCCTAC
AGCATTATGGTTTTCTACCACCTTTTATAATGGTGTTGTTGGTTCTGGTC
ATGGTTATCATTTATTGGTTTTTCTTGAGAGAATCGTACCCACCTACTGA
TGGAGATTCAAAGATTGGTTTTTTTGCTATCATTCGTGAAAAACTGTTCA
AAAGAGGCTATAAAATGATATCGGACCAAAATACCGTCAGACGGCGGAAG
ATAATTTTGTTATGGCTTTACTTCTTTATTGCCTTATTTATGCTATCTAC
CATTTGGACAAGTCAGAAAAGAAATACGAAGAACTCAATGAAGAAGAAGA
TGGAGAAGAAAGTGGAGTCAAGGCTATCAATTCTTGAGTGTATTATTTTC
ATTGATTGGTTGTATCGAGACCTCTGCTGCTCTTGTAGCAGGTCCAGTTG
CTAGTGCTATCTACAAATCAACGGTATCGGAAATTCCAAATGCTGTTTTC
TTTATCTTCACTGGTTGCGCTGGTATCATCACCTGTTTTGTATTTTGCTA
TTTGGAATGCTGGTACTGGACTTGGTGCTCCTGCAGTCAGAGGGAAATTA
TCGAAAATGTTTTCAAAAGAAGATCAAGTGATGGCTGGCTCAGTGTCAGT
TCTTCTCCTCTTCATCTTACGACCACCGATCAGTTTCTCACCTGCAAACA
TTGGTTTCTTCCTCGCCGAAGCACAAGCAATTAAATTCATAGGTTCACTT
TTCGCTAATTATATATTGATTCGTGTACTTGGCTGGACCGATAACAGCAT
TTTATTGATCTATGGGATTACATCAATGGGTTTTTATCTTTCACTTGCAT
TCTCGTCAACAACTTGGCATATTTATTTGCATGGTTGAATCAAGATATGT
GGAACCGGTGTTGCTTGGTTACATGTTTTTCTTATACTCAGCCATGACTT
TGAGTCAACAGTTAGTGTACCGTAAAACATGCATCCGGCAATTCAACACT
TCATATTGTCACCTCATATCCGAATCAAAAAATGAAACATTATACAAACA
TGATTCTGATCTAATCCAAAAGGAGACTTCCCAATGGATAATGTATCTGT
CTATAATACGAACAATCCCAGCGGTAATATCAACTCTGGTTTGTACAGCT
TATTTTGATCGTGTTGGTCGTAAACGTATTATGATTATGCCTATAATAGG
TGCAACGCTGGTCACAATTAGTGATTTAGCAAATTCGTATTACCTTTCTT
CATCTATCGTATGGATGTTTTTTGGAGCATTTCTTGATGGCTTATTTGGT
CAATTTGCATCCATCCTAGCATCGGCTTTTGCTTATCTAGCAGATACAAT
CAGTGTAGAGAATCGAACCAGAAGAGTAATTTTACTGGAATCAATGGTTT
TTCTTGGTGGATGTATTGCAGAGATTGGAACTGGACAGCTCCTACAGCAT
TATGGTTTTCTACCACCTTTTATAATGGTGTTGTTGGTTCTGGTCATGGT
TATCATTTATTGGTTTTTCTTGAGAGAATCGTACCCACCTACTGATGGAG
ATTCAAAGATTGGTTTTTTTGCTATCATTCGTGAAAAACTGTTCAAAAGA
GGCTATAAAATGATATCGGACCAAAATACCGTCAGACGGCGGAAGATAAT
TTTGTTATGGCTTTACTTCTTTATTGCCTTATTTATGCTATCTACCATTT
GGACAAGTCAGAAAAGAAATACGAAGAACTCAATGAAGAAGAAGATGGAG
AAGAAAGTGGAGTCAAGGCTATCAATTCTTGAGTGTATTATTTTCATTGA
TTGGTTGTATCGAGACCTCTGCTGCTCTTGTAGCAGGTCCAGTTGCTAGT
GCTATCTACAAATCAACGGTATCGGAAATTCCAAATGCTGTTTTCTTTAT
CTTCACTGGTTGCGCTGGTATCATCACCTGTTTTGTATTTTGCTATTTGG
AATGCTGGTACTGGACTTGGTGCTCCTGCAGTCAGAGGGAAATTATCGAA
AATGTTTTCAAAAGAAGATCAAGTGATGGCTGGCTCAGTGTCAGTTCTTC
TCCTCTTCATCTTACGACCACCGATCAGTTTCTCACCTGCAAACATTGGT
TTCTTCCTCGCCGAAGCACAAGCAATTAAATTCATAGGTTCACTTTTCGC
TAATTATATATTGATTCGTGTACTTGGCTGGACCGATAACAGCATTTTAT
TGATCTATGGGATTACATCAATGGGTTTTTATCTTTCACTTGCATTCTCG
TCAACAACTTGGCATATTTATTTGCATGGTTGAATCAAGATATGTGGAAC
CGGTGTTGCTTGGTTACATGTTTTTCTTATACTCAGCCATGACTTTGAGT
CAACAGTTAGTGTACCGTAAAACATGCATCCGGCAATTCAACACTTCATA
TTGTCACCTCATATCCGAATCAAAAAATGAAACATTATACAAACATGATT
CTGATCTAATCCAAAAGGAGACTTCCCAATGGATAATGTATCTGTCTATA
ATACGAACAATCCCAGCGGTAATATCAACTCTGGTTTGTACAGCTTATTT
TGATCGTGTTGGTCGTAAACGTATTATGATTATGCCTATAATAGGTGCAA
CGCTGGTCACAATTAGTGATTTAGCAAATTCGTATTACCTTTCTTCATCT
ATCGTATGGATGTTTTTTGGAGCATTTCTTGATGGCTTATTTGGTCAATT
TGCATCCATCCTAGCATCGGCTTTTGCTTATCTAGCAGATACAATCAGTG
TAGAGAATCGAACCAGAAGAGTAATTTTACTGGAATCAATGGTTTTTCTT
GGTGGATGTATTGCAGAGATTGGAACTGGACAGCTCCTACAGCATTATGG
TTTTCTACCACCTTTTATAATGGTGTTGTTGGTTCTGGTCATGGTTATCA
TTTATTGGTTTTTCTTGAGAGAATCGTACCCACCTACTGATGGAGATTCA
AAGATTGGTTTTTTTGCTATCATTCGTGAAAAACTGTTCAAAAGAGGCTA
TAAAATGATATCGGACCAAAATACCGTCAGACGGCGGAAGATAATTTTGT
TATGGCTTTACTTCTTTATTGCCTTATTTATGCTATCTACCATTTGGACA
AGTCAGAAAAGAAATACGAAGAACTCAATGAAGAAGAAGATGGAGAAGAA
AGTGGAGTCAAGGCTATCAATTCTTGAGTGTATTATTTTCATTGATTGGT
TGTATCGAGACCTCTGCTGCTCTTGTAGCAGGTCCAGTTGCTAGTGCTAT
CTACAAATCAACGGTATCGGAAATTCCAAATGCTGTTTTCTTTATCTTCA
CTGGTTGCGCTGGTATCATCACCTGTTTTGTATTTTGCTATTTGGAATGC
TGGTACTGGACTTGGTGCTCCTGCAGTCAGAGGGAAATTATCGAAAATGT
TTTCAAAAGAAGATCAAGTGATGGCTGGCTCAGTGTCAGTTCTTCTCCTC
TTCATCTTACGACCACCGATCAGTTTCTCACCTGCAAACATTGGTTTCTT
CCTCGCCGAAGCACAAGCAATTAAATTCATAGGTTCACTTTTCGCTAATT
ATATATTGATTCGTGTACTTGGCTGGACCGATAACAGCATTTTATTGATC
TATGGGATTACATCAATGGGTTTTTATCTTTCACTTGCATTCTCGTCAAC
AACTTGGCATATTTATTTGCATGGTTGAATCAAGATATGTGGAACCGGTG
TTGCTTGGTTACATGTTTTTCTTATACTCAGCCATGACTTTGAGTCAACA
GTTAGTGTACCGTAAAACATGCATCCGGCAATTCAACACTTCATATTGTC
ACCTCATATCCGAATCAAAAAATGAAACATTATACAAACATGATTCTGAT
CTAATCCAAAAGGAGACTTCCCAATGGATAATGTATCTGTCTATAATACG
AACAATCCCAGCGGTAATATCAACTCTGGTTTGTACAGCTTATTTTGATC
GTGTTGGTCGTAAACGTATTATGATTATGCCTATAATAGGTGCAACGCTG
GTCACAATTAGTGATTTAGCAAATTCGTATTACCTTTCTTCATCTATCGT
ATGGATGTTTTTTGGAGCATTTCTTGATGGCTTATTTGGTCAATTTGCAT
CCATCCTAGCATCGGCTTTTGCTTATCTAGCAGATACAATCAGTGTAGAG
AATCGAACCAGAAGAGTAATTTTACTGGAATCAATGGTTTTTCTTGGTGG
ATGTATTGCAGAGATTGGAACTGGACAGCTCCTACAGCATTATGGTTTTC
TACCACCTTTTATAATGGTGTTGTTGGTTCTGGTCATGGTTATCATTTAT
TGGTTTTTCTTGAGAGAATCGTACCCACCTACTGATGGAGATTCAAAGAT
TGGTTTTTTTGCTATCATTCGTGAAAAACTGTTCAAAAGAGGCTATAAAA
TGATATCGGACCAAAATACCGTCAGACGGCGGAAGATAATTTTGTTATGG
CTTTACTTCTTTATTGCCTTATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034420XLOC_034420Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054640-exon-scaffold_243-1575043694:446070..446916TCONS_00054640-exon-scaffold_243-1575043694:446070..446916Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1575043694:445297..445548TCONS_00054640-exon-scaffold_243-1575043694:445297..445548Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1575043694:444959..445042TCONS_00054640-exon-scaffold_243-1575043694:444959..445042Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1575043694:443213..443369TCONS_00054640-exon-scaffold_243-1575043694:443213..443369Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1575043694:442410..442596TCONS_00054640-exon-scaffold_243-1575043694:442410..442596Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1510915933:446070..446916TCONS_00054640-exon-scaffold_243-1510915933:446070..446916Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1510915933:445297..445548TCONS_00054640-exon-scaffold_243-1510915933:445297..445548Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1510915933:444959..445042TCONS_00054640-exon-scaffold_243-1510915933:444959..445042Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1510915933:443213..443369TCONS_00054640-exon-scaffold_243-1510915933:443213..443369Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1510915933:442410..442596TCONS_00054640-exon-scaffold_243-1510915933:442410..442596Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1491911889:446070..446916TCONS_00054640-exon-scaffold_243-1491911889:446070..446916Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1491911889:445297..445548TCONS_00054640-exon-scaffold_243-1491911889:445297..445548Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1491911889:444959..445042TCONS_00054640-exon-scaffold_243-1491911889:444959..445042Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1491911889:443213..443369TCONS_00054640-exon-scaffold_243-1491911889:443213..443369Clytia hemisphaericaexon
TCONS_00054640-exon-scaffold_243-1491911889:442410..442596TCONS_00054640-exon-scaffold_243-1491911889:442410..442596Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054640-proteinTCONS_00054640-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:442410..446916 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.7806	39.8462	16.6104	10.6748	16.2625	11.1871	13.2891	13.4779	12.9067	12.784	11.454	9.55517	8.18132	8.2175	8.78879	9.51373	7.51706	9.13384	4.74997	7.87495	8.97887	9.82549	26.6969	21.4093	9.36377	11.3489	6.71757	5.90866	14.9085	17.7768
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00054640 vs. Swiss-Prot (Human)
Match: S46A3 (Solute carrier family 46 member 3 OS=Homo sapiens GN=SLC46A3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.751e-16
Identity = 102/425 (24.00%), Postives = 190/425 (44.71%), Query Frame = 1 
Query:   58 YVEPVLLGYMFFLYSAMTLSQQLVYRK--------TCIRQFNTSYCHLISESKNETLYKHDSDLIQKETSQWIMYLSIIRTIPAVISTLVCTAYFDRVGRKRIMIMPIIGATLVTISDLANSYYLSSSIVWMFFGAFLDGLFGQFASILASAFAYLADTISV-ENRTRRVILLESMVFLGGCIAEIGTGQLLQHYGXXXXXXXXXXXXXXXXIY-WFFLRESYPPTDGDSKIGFFAIIREKLFKRGYKMISDQNTVRRRKIILLWLYFFIALFMMAGSVSVLLLFILRPPISFSPANIGFFLAEAQAIKFIGSLFANYILIRVLGWTDNSILLIY-GI-TSMGFYLSLAFSSTTWHIYLLAIWNAGTGLGAPAVRGKLSKMFSKEDQGVLFSLIGCIETSAALVAGPVASAIYKSTVSEIPNAVF 1296
            +VEP +    F +     L+ Q VYR+        T     N S C    ++K+  ++    + +QK+ S++ + + I   IP ++ST +  +  D  GRK  MI+  +GA L T   L    Y +     +    F+    G + +   + FAY+ D     + +T R+ +++ ++ L   +  + +G  ++  GF   F+++ + L + +IY  FFL +        +     +   + LF R Y +  + +  RR  + LL        F++ G   + +L+ L  P+ ++   IG+  A   A     S   +++ I +  +    I + + GI T+M      AF+STT  ++L  +    T +    +R  LSK+    +QG LF+ I  +ET   + A    + IY +TV+  P   F
Sbjct:    5 FVEPAIFLSAFAMTLTGPLTTQYVYRRIWEETGNYTFSSDSNISECE---KNKSSPIFAFQEE-VQKKVSRFNLQMDISGLIPGLVSTFILLSISDHYGRKFPMILSSVGA-LATSVWLCLLCYFAFPFQLLIASTFIGAFCGNYTTFWGACFAYIVDQCKEHKQKTIRIAIIDFLLGLVTGLTGLSSGYFIRELGFEWSFLIIAVSLAVNLIYILFFLGDPVKECSSQNVTMSCSEGFKNLFYRTYMLFKNASGKRRFLLCLLLFTVITYFFVVIGIAPIFILYELDSPLCWNEVFIGYGSALGSA-----SFLTSFLGIWLFSYCMEDIHMAFIGIFTTMTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYSATVAWYPGFTF 419
The following BLAST results are available for this feature:
BLAST of TCONS_00054640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S46A33.751e-1624.00Solute carrier family 46 member 3 OS=Homo sapiens ... [more]
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